Wall clock time and date at job start Tue Mar 31 2020 10:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38131 * 119.93456 * 2 1 4 4 C 1.38064 * 120.25828 * 179.76459 * 3 2 1 5 5 C 1.39481 * 120.11387 * 0.50902 * 4 3 2 6 6 C 1.48305 * 120.06843 * 179.76871 * 5 4 3 7 7 C 1.40032 * 119.98766 * 184.72330 * 6 5 4 8 8 N 1.32176 * 120.29662 * 180.25365 * 7 6 5 9 9 C 1.31892 * 120.28467 * 359.48400 * 8 7 6 10 10 C 1.40827 * 119.95992 * 0.53646 * 9 8 7 11 11 C 1.41325 * 120.14513 * 179.69908 * 10 9 8 12 12 H 1.08006 * 120.00073 * 353.75467 * 11 10 9 13 13 C 1.40044 * 120.00345 * 173.75659 * 11 10 9 14 14 N 1.30736 * 120.00048 * 6.29642 * 13 11 10 15 15 Si 1.86803 * 120.00362 * 186.29875 * 13 11 10 16 16 H 1.48501 * 109.47185 * 60.00099 * 15 13 11 17 17 H 1.48501 * 109.46961 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46830 * 299.99860 * 15 13 11 19 19 N 1.32520 * 119.98418 * 4.74119 * 6 5 4 20 20 C 1.39177 * 119.86280 * 359.49167 * 5 4 3 21 21 C 1.39141 * 119.75300 * 0.25280 * 20 5 4 22 22 C 1.48407 * 120.05909 * 180.02562 * 21 20 5 23 23 C 1.39336 * 120.11700 * 129.72436 * 22 21 20 24 24 C 1.38021 * 119.87279 * 179.76533 * 23 22 21 25 25 C 1.38323 * 120.12002 * 0.53031 * 24 23 22 26 26 C 1.38322 * 120.24502 * 359.69800 * 25 24 23 27 27 C 1.38021 * 120.11727 * 0.04811 * 26 25 24 28 28 H 1.09004 * 109.47432 * 269.97772 * 1 2 3 29 29 H 1.08993 * 109.47307 * 29.98069 * 1 2 3 30 30 H 1.08998 * 109.46824 * 149.98376 * 1 2 3 31 31 H 1.08007 * 119.87259 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.94473 * 180.25281 * 4 3 2 33 33 H 1.07998 * 119.84884 * 359.97438 * 7 6 5 34 34 H 1.07992 * 120.02092 * 180.27828 * 9 8 7 35 35 H 0.96999 * 120.00458 * 180.02562 * 14 13 11 36 36 H 1.08007 * 120.12066 * 180.23501 * 20 5 4 37 37 H 1.07996 * 120.06476 * 0.02562 * 23 22 21 38 38 H 1.08002 * 119.93723 * 180.25186 * 24 23 22 39 39 H 1.07998 * 119.87783 * 179.72078 * 25 24 23 40 40 H 1.07995 * 119.94071 * 180.02562 * 26 25 24 41 41 H 1.08007 * 120.05680 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1970 0.0000 4 6 3.5769 1.2048 0.0049 5 6 4.2835 0.0023 -0.0008 6 6 5.7665 0.0119 -0.0007 7 6 6.4742 -1.1918 -0.1064 8 7 7.7960 -1.1908 -0.1019 9 6 8.4599 -0.0551 -0.0081 10 6 7.7598 1.1621 0.0992 11 6 8.4673 2.3808 0.2063 12 1 9.5425 2.3739 0.3076 13 6 7.7742 3.5975 0.1811 14 7 6.4669 3.6052 0.1827 15 14 8.7176 5.2094 0.1451 16 1 9.5701 5.2570 -1.0699 17 1 7.7591 6.3434 0.1215 18 1 9.5734 5.3090 1.3546 19 7 6.4214 1.1596 0.0996 20 6 3.5940 -1.2067 -0.0008 21 6 2.2026 -1.2080 -0.0004 22 6 1.4605 -2.4932 0.0002 23 6 0.4441 -2.7132 0.9276 24 6 -0.2461 -3.9084 0.9205 25 6 0.0770 -4.8911 0.0022 26 6 1.0882 -4.6798 -0.9176 27 6 1.7814 -3.4863 -0.9228 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6531 2.1306 0.0004 32 1 4.1107 2.1437 0.0090 33 1 5.9376 -2.1255 -0.1873 34 1 9.5398 -0.0588 -0.0093 35 1 5.9867 4.4478 0.1649 36 1 4.1370 -2.1403 -0.0014 37 1 0.1940 -1.9483 1.6478 38 1 -1.0368 -4.0785 1.6362 39 1 -0.4626 -5.8266 0.0030 40 1 1.3361 -5.4502 -1.6327 41 1 2.5706 -3.3222 -1.6417 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244785081.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:28 Heat of formation + Delta-G solvation = 79.348537 kcal Electronic energy + Delta-G solvation = -24401.983715 eV Core-core repulsion = 21017.699293 eV Total energy + Delta-G solvation = -3384.284422 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.127 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.90484 -39.00621 -37.90734 -34.15935 -33.59039 -32.18128 -31.75798 -30.91579 -29.92933 -28.86954 -26.82840 -25.77608 -23.38500 -22.68924 -22.42305 -22.08299 -20.89206 -19.80492 -17.67620 -17.01827 -16.12329 -15.62703 -15.53893 -15.19081 -14.85821 -14.81311 -14.36623 -14.25466 -13.70989 -13.44328 -13.29347 -13.08362 -13.00613 -12.71885 -12.63642 -12.03009 -11.74072 -11.67923 -11.56301 -11.38559 -11.37092 -11.07952 -10.89399 -10.79031 -10.48677 -10.29726 -9.89256 -9.58431 -9.43936 -9.06550 -8.94712 -8.45067 -8.06084 -7.51464 -7.35472 -6.59877 -4.75805 1.05937 1.38386 1.45563 1.97993 2.61892 2.97220 2.98324 3.00120 3.14076 3.77990 3.79420 4.22843 4.65250 4.70776 4.90623 4.93120 5.09091 5.10381 5.19933 5.35678 5.44652 5.50458 5.56739 5.68389 5.73334 5.80019 5.84210 5.95335 5.98248 6.01894 6.08662 6.24602 6.32138 6.37686 6.41012 6.47210 6.56194 6.63476 6.74633 6.90631 6.94398 6.96398 7.00614 7.09378 7.30693 7.45491 7.59122 7.97040 8.34250 8.58474 9.16780 9.73944 10.05951 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.020447 B = 0.003271 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.071555 B = 8558.187742 C = 9748.892410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.078 4.078 3 C -0.131 4.131 4 C -0.069 4.069 5 C -0.022 4.022 6 C 0.137 3.863 7 C -0.107 4.107 8 N -0.430 5.430 9 C -0.062 4.062 10 C 0.208 3.792 11 C -0.412 4.412 12 H 0.091 0.909 13 C 0.068 3.932 14 N -0.712 5.712 15 Si 0.914 3.086 16 H -0.263 1.263 17 H -0.276 1.276 18 H -0.263 1.263 19 N -0.442 5.442 20 C -0.088 4.088 21 C -0.070 4.070 22 C -0.028 4.028 23 C -0.108 4.108 24 C -0.123 4.123 25 C -0.127 4.127 26 C -0.120 4.120 27 C -0.109 4.109 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.119 0.881 32 H 0.151 0.849 33 H 0.127 0.873 34 H 0.134 0.866 35 H 0.277 0.723 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.403 -6.439 -0.300 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.079 4.079 3 C -0.149 4.149 4 C -0.088 4.088 5 C -0.023 4.023 6 C -0.010 4.010 7 C -0.266 4.266 8 N -0.141 5.141 9 C -0.232 4.232 10 C 0.082 3.918 11 C -0.444 4.444 12 H 0.109 0.891 13 C -0.159 4.159 14 N -0.333 5.333 15 Si 0.737 3.263 16 H -0.187 1.187 17 H -0.201 1.201 18 H -0.187 1.187 19 N -0.159 5.159 20 C -0.107 4.107 21 C -0.070 4.070 22 C -0.028 4.028 23 C -0.126 4.126 24 C -0.141 4.141 25 C -0.145 4.145 26 C -0.138 4.138 27 C -0.127 4.127 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.137 0.863 32 H 0.169 0.831 33 H 0.145 0.855 34 H 0.152 0.848 35 H 0.089 0.911 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.587 -6.286 -0.290 14.973 hybrid contribution 0.477 0.698 -0.007 0.846 sum -13.110 -5.587 -0.297 14.254 Atomic orbital electron populations 1.20859 0.91763 1.02454 1.01801 1.19846 0.95401 0.92304 1.00340 1.20922 0.94338 0.96864 1.02792 1.21741 0.93135 0.99713 0.94193 1.18621 0.91441 0.92725 0.99539 1.20634 0.92533 0.91682 0.96174 1.22509 0.90718 0.96909 1.16454 1.67670 1.08591 1.30368 1.07464 1.23224 0.99300 0.89283 1.11386 1.19358 0.88784 0.93433 0.90248 1.19600 0.94990 0.89079 1.40753 0.89105 1.26116 0.95014 1.01387 0.93382 1.70029 1.07616 1.28303 1.27310 0.86271 0.80096 0.79777 0.80109 1.18728 1.20063 1.18737 1.69511 1.07822 1.23394 1.15223 1.21244 0.92434 0.97800 0.99208 1.18402 0.92504 0.91244 1.04832 1.18802 0.95419 0.93080 0.95462 1.21283 0.95626 0.97375 0.98343 1.21058 1.00051 0.93817 0.99152 1.21143 0.98145 0.99086 0.96151 1.21080 0.96420 0.97198 0.99098 1.21314 0.99742 0.93054 0.98580 0.91545 0.91919 0.91537 0.86254 0.83099 0.85520 0.84836 0.91135 0.85728 0.85877 0.86212 0.86402 0.86110 0.85752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 8.45 36.00 0.30 -0.98 16 2 C -0.08 -1.17 5.88 -104.23 -0.61 -1.78 16 3 C -0.13 -2.13 9.67 -39.68 -0.38 -2.51 16 4 C -0.07 -1.37 9.57 -39.18 -0.38 -1.74 16 5 C -0.02 -0.45 5.87 -104.94 -0.62 -1.07 16 6 C 0.14 3.32 6.73 -82.76 -0.56 2.77 16 7 C -0.11 -2.55 10.61 -16.73 -0.18 -2.73 16 8 N -0.43 -10.73 10.47 -12.06 -0.13 -10.86 16 9 C -0.06 -1.56 10.98 -16.55 -0.18 -1.74 16 10 C 0.21 5.55 6.54 -84.84 -0.55 4.99 16 11 C -0.41 -10.41 9.15 -37.73 -0.35 -10.75 16 12 H 0.09 2.10 7.86 -52.48 -0.41 1.69 16 13 C 0.07 1.61 5.49 -17.34 -0.10 1.51 16 14 N -0.71 -17.52 11.51 55.55 0.64 -16.88 16 15 Si 0.91 17.48 29.56 -169.99 -5.03 12.45 16 16 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 17 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 18 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 19 N -0.44 -11.75 7.17 -7.50 -0.05 -11.80 16 20 C -0.09 -1.57 8.88 -38.90 -0.35 -1.91 16 21 C -0.07 -1.09 5.47 -104.94 -0.57 -1.67 16 22 C -0.03 -0.38 4.70 -104.90 -0.49 -0.87 16 23 C -0.11 -1.29 7.91 -39.25 -0.31 -1.60 16 24 C -0.12 -1.26 10.03 -39.63 -0.40 -1.66 16 25 C -0.13 -1.27 10.04 -39.52 -0.40 -1.66 16 26 C -0.12 -1.29 10.03 -39.63 -0.40 -1.69 16 27 C -0.11 -1.38 9.51 -39.26 -0.37 -1.75 16 28 H 0.07 0.67 7.50 -51.93 -0.39 0.28 16 29 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 30 H 0.07 0.75 6.45 -51.93 -0.33 0.41 16 31 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 32 H 0.15 3.30 7.55 -52.49 -0.40 2.91 16 33 H 0.13 2.64 6.21 -52.49 -0.33 2.31 16 34 H 0.13 3.01 8.06 -52.49 -0.42 2.59 16 35 H 0.28 6.17 8.29 -40.82 -0.34 5.83 16 36 H 0.12 2.11 6.20 -52.48 -0.33 1.78 16 37 H 0.12 1.35 6.86 -52.49 -0.36 0.99 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.12 1.53 8.04 -52.48 -0.42 1.11 16 LS Contribution 348.88 15.07 5.26 5.26 Total: -1.00 -28.79 348.88 -10.83 -39.62 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -4.63 Total: 9.06 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -6.88 Total: -26.84 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.46 Total: -39.54 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.45 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.79 -10.83 -39.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244785081.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.964 kcal (2) G-P(sol) polarization free energy of solvation -28.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds