Wall clock time and date at job start Tue Mar 31 2020 12:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47396 * 2 1 4 4 O 1.42904 * 109.47069 * 119.99964 * 2 1 3 5 5 C 1.35901 * 117.00043 * 154.98602 * 4 2 1 6 6 C 1.38756 * 120.05701 * 5.49351 * 5 4 2 7 7 C 1.38115 * 119.94454 * 179.68701 * 6 5 4 8 8 C 1.38294 * 120.05364 * 0.56196 * 7 6 5 9 9 C 1.50704 * 119.93938 * 179.73063 * 8 7 6 10 10 C 1.52994 * 109.46981 * 269.72203 * 9 8 7 11 11 C 1.52998 * 109.47302 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47365 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00301 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00214 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00050 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 119.99897 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46784 * 90.00066 * 16 14 12 18 18 H 1.48500 * 109.47025 * 210.00112 * 16 14 12 19 19 H 1.48498 * 109.46902 * 330.00044 * 16 14 12 20 20 C 1.38235 * 120.11170 * 359.45329 * 8 7 6 21 21 C 1.38171 * 120.05734 * 0.25305 * 20 8 7 22 22 C 1.50700 * 120.02697 * 180.02562 * 21 20 8 23 23 F 1.39891 * 109.47489 * 0.02562 * 22 21 20 24 24 F 1.39902 * 109.46726 * 120.00420 * 22 21 20 25 25 F 1.39900 * 109.46876 * 239.99884 * 22 21 20 26 26 H 1.08999 * 109.46975 * 300.00180 * 1 2 3 27 27 H 1.09006 * 109.47115 * 60.00044 * 1 2 3 28 28 H 1.08992 * 109.47116 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47520 * 240.00355 * 2 1 3 30 30 H 1.09005 * 109.46899 * 59.99685 * 3 2 1 31 31 H 1.08997 * 109.47235 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47073 * 300.00050 * 3 2 1 33 33 H 1.08004 * 120.02190 * 359.97438 * 6 5 4 34 34 H 1.08006 * 119.97554 * 180.31290 * 7 6 5 35 35 H 1.08999 * 109.46892 * 149.72834 * 9 8 7 36 36 H 1.08996 * 109.47436 * 29.72929 * 9 8 7 37 37 H 1.09001 * 109.47305 * 60.00522 * 10 9 8 38 38 H 1.08996 * 109.47628 * 300.00609 * 10 9 8 39 39 H 1.08999 * 109.47076 * 60.00323 * 11 10 9 40 40 H 1.09004 * 109.47241 * 300.00556 * 11 10 9 41 41 H 0.97002 * 119.99728 * 179.97438 * 15 14 12 42 42 H 1.08007 * 119.97502 * 180.27099 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2465 -1.2250 1.0978 6 6 4.0352 -1.0233 -0.0258 7 6 5.2978 -1.5794 -0.0907 8 6 5.7716 -2.3464 0.9580 9 6 7.1473 -2.9569 0.8819 10 6 7.0538 -4.3475 0.2508 11 6 8.4503 -4.9677 0.1740 12 6 8.3583 -6.3371 -0.4482 13 1 7.3996 -6.7265 -0.7575 14 6 9.4980 -7.0936 -0.6216 15 7 9.4176 -8.2889 -1.1641 16 14 11.1562 -6.4206 -0.0859 17 1 11.4145 -6.8060 1.3248 18 1 12.2220 -6.9807 -0.9551 19 1 11.1503 -4.9401 -0.2015 20 6 4.9876 -2.5491 2.0784 21 6 3.7262 -1.9899 2.1508 22 6 2.8724 -2.2109 3.3728 23 9 3.5672 -3.0070 4.2895 24 9 2.5718 -0.9775 3.9608 25 9 1.6857 -2.8526 3.0026 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 3.6638 -0.4281 -0.8470 34 1 5.9141 -1.4185 -0.9630 35 1 7.5636 -3.0408 1.8857 36 1 7.7925 -2.3240 0.2727 37 1 6.6375 -4.2637 -0.7531 38 1 6.4085 -4.9804 0.8599 39 1 8.8663 -5.0516 1.1780 40 1 9.0960 -4.3349 -0.4350 41 1 10.2195 -8.8209 -1.2864 42 1 5.3616 -3.1448 2.8980 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066713.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:55 Heat of formation + Delta-G solvation = -190.511032 kcal Electronic energy + Delta-G solvation = -26540.565988 eV Core-core repulsion = 22263.121166 eV Total energy + Delta-G solvation = -4277.444822 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.07701 -47.61737 -47.51742 -40.69480 -38.39733 -34.94443 -33.58410 -32.39144 -31.92467 -30.31199 -27.72853 -27.04664 -25.94610 -23.93653 -23.03628 -21.50111 -20.84094 -20.08559 -18.86561 -18.42127 -18.37332 -17.44181 -16.64780 -16.24442 -15.81587 -15.03923 -14.87514 -14.59418 -14.43062 -14.28860 -14.07754 -13.97849 -13.82294 -13.71629 -13.70513 -13.53356 -13.23470 -12.91515 -12.71045 -12.65157 -12.58953 -12.38100 -11.89165 -11.75200 -11.67523 -11.45148 -11.15026 -10.97145 -10.83141 -10.71866 -9.93448 -9.74117 -9.65919 -9.37840 -9.19067 -8.53598 -8.24214 -6.03895 -4.01945 0.85057 1.18555 2.68142 2.80360 3.30674 3.37130 3.38155 3.41035 3.75397 4.04065 4.35265 4.45199 4.45736 4.50162 4.60480 4.72286 4.75780 4.92131 5.14435 5.16507 5.18136 5.29871 5.32050 5.36399 5.38756 5.50783 5.70115 5.75998 5.76844 5.84287 5.91931 6.04380 6.15221 6.31636 6.53178 6.65279 6.65725 6.89321 7.05029 7.30378 7.42657 7.79928 8.54686 9.01522 9.58581 11.09692 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.017794 B = 0.002965 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.210076 B = 9440.864914 C =10182.893233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.076 3.924 3 C -0.181 4.181 4 O -0.305 6.305 5 C 0.169 3.831 6 C -0.211 4.211 7 C -0.046 4.046 8 C -0.103 4.103 9 C -0.084 4.084 10 C -0.097 4.097 11 C -0.015 4.015 12 C -0.521 4.521 13 H 0.071 0.929 14 C 0.065 3.935 15 N -0.905 5.905 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.265 1.265 20 C -0.036 4.036 21 C -0.219 4.219 22 C 0.519 3.481 23 F -0.179 7.179 24 F -0.177 7.177 25 F -0.176 7.176 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.012 0.988 40 H 0.015 0.985 41 H 0.263 0.737 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.193 20.858 4.286 26.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.020 3.980 3 C -0.238 4.238 4 O -0.219 6.219 5 C 0.123 3.877 6 C -0.229 4.229 7 C -0.064 4.064 8 C -0.104 4.104 9 C -0.121 4.121 10 C -0.135 4.135 11 C -0.052 4.052 12 C -0.559 4.559 13 H 0.089 0.911 14 C -0.136 4.136 15 N -0.544 5.544 16 Si 0.708 3.292 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.190 1.190 20 C -0.054 4.054 21 C -0.221 4.221 22 C 0.464 3.536 23 F -0.160 7.160 24 F -0.159 7.159 25 F -0.157 7.157 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.030 0.970 40 H 0.034 0.966 41 H 0.072 0.928 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.268 20.710 4.421 26.703 hybrid contribution 0.829 0.184 0.204 0.873 sum -15.439 20.893 4.625 26.387 Atomic orbital electron populations 1.21856 0.92161 1.03464 1.03110 1.22521 0.95684 0.92657 0.87121 1.22399 1.02317 0.95795 1.03317 1.86170 1.28714 1.67746 1.39249 1.18444 0.84782 0.91331 0.93189 1.21233 0.96240 1.06981 0.98480 1.21148 0.94290 0.93088 0.97834 1.20046 0.98154 0.98643 0.93510 1.20795 0.90929 0.98045 1.02312 1.21483 1.00062 0.92276 0.99657 1.19596 0.92602 0.96592 0.96409 1.21161 0.95605 0.99122 1.39966 0.91094 1.25053 0.99153 0.94675 0.94724 1.69922 1.29147 1.10620 1.44680 0.86766 0.83895 0.79819 0.78721 1.20298 1.21457 1.18992 1.20831 0.90602 0.95387 0.98548 1.19265 0.97975 1.09613 0.95214 1.18003 0.78448 0.73943 0.83161 1.93162 1.79067 1.74660 1.69156 1.93197 1.93674 1.43387 1.85622 1.93205 1.49000 1.82037 1.91455 0.91372 0.90362 0.91416 0.90464 0.91280 0.91657 0.90816 0.84429 0.84702 0.91072 0.91047 0.92653 0.92615 0.97011 0.96629 0.92765 0.83793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.56 37.15 0.36 -0.63 16 2 C 0.08 0.61 2.85 -26.73 -0.08 0.54 16 3 C -0.18 -1.21 9.17 37.16 0.34 -0.87 16 4 O -0.31 -3.53 8.71 -19.43 -0.17 -3.70 16 5 C 0.17 2.09 6.48 -39.22 -0.25 1.83 16 6 C -0.21 -2.28 8.25 -39.43 -0.33 -2.61 16 7 C -0.05 -0.53 9.69 -39.61 -0.38 -0.92 16 8 C -0.10 -1.38 5.13 -104.60 -0.54 -1.92 16 9 C -0.08 -1.23 5.34 -27.88 -0.15 -1.38 16 10 C -0.10 -1.84 5.13 -26.73 -0.14 -1.97 16 11 C -0.01 -0.34 4.04 -27.89 -0.11 -0.45 16 12 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 13 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 14 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 15 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 16 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 20 C -0.04 -0.48 9.08 -39.61 -0.36 -0.84 16 21 C -0.22 -2.93 5.38 -104.47 -0.56 -3.49 16 22 C 0.52 7.04 2.99 36.01 0.11 7.15 16 23 F -0.18 -2.42 15.97 2.25 0.04 -2.38 16 24 F -0.18 -2.42 16.95 2.25 0.04 -2.38 16 25 F -0.18 -2.49 16.95 2.25 0.04 -2.45 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.57 6.31 -51.93 -0.33 0.24 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.47 6.92 -51.93 -0.36 0.11 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.14 1.14 5.43 -52.48 -0.29 0.85 16 34 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 35 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 36 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 40 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.14 1.81 7.16 -52.48 -0.38 1.44 16 LS Contribution 357.10 15.07 5.38 5.38 Total: -1.00 -31.58 357.10 -7.02 -38.59 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -5.92 Total: -3.86 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -2.52 Total: -18.90 kcal Atomic # 7 Polarization: -28.02 SS G_CDS: 0.77 Total: -27.24 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: -0.17 Total: -3.70 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 0.11 Total: -7.21 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.58 -7.02 -38.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066713.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.918 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds