Wall clock time and date at job start Tue Mar 31 2020 12:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47396 * 2 1 4 4 O 1.42904 * 109.47069 * 119.99964 * 2 1 3 5 5 C 1.35901 * 117.00043 * 154.98602 * 4 2 1 6 6 C 1.38756 * 120.05701 * 5.49351 * 5 4 2 7 7 C 1.38115 * 119.94454 * 179.68701 * 6 5 4 8 8 C 1.38294 * 120.05364 * 0.56196 * 7 6 5 9 9 C 1.50704 * 119.93938 * 179.73063 * 8 7 6 10 10 C 1.52994 * 109.46981 * 269.72203 * 9 8 7 11 11 C 1.52998 * 109.47302 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47365 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00301 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00214 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00050 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 119.99897 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46784 * 90.00066 * 16 14 12 18 18 H 1.48500 * 109.47025 * 210.00112 * 16 14 12 19 19 H 1.48498 * 109.46902 * 330.00044 * 16 14 12 20 20 C 1.38235 * 120.11170 * 359.45329 * 8 7 6 21 21 C 1.38171 * 120.05734 * 0.25305 * 20 8 7 22 22 C 1.50700 * 120.02697 * 180.02562 * 21 20 8 23 23 F 1.39891 * 109.47489 * 0.02562 * 22 21 20 24 24 F 1.39902 * 109.46726 * 120.00420 * 22 21 20 25 25 F 1.39900 * 109.46876 * 239.99884 * 22 21 20 26 26 H 1.08999 * 109.46975 * 300.00180 * 1 2 3 27 27 H 1.09006 * 109.47115 * 60.00044 * 1 2 3 28 28 H 1.08992 * 109.47116 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47520 * 240.00355 * 2 1 3 30 30 H 1.09005 * 109.46899 * 59.99685 * 3 2 1 31 31 H 1.08997 * 109.47235 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47073 * 300.00050 * 3 2 1 33 33 H 1.08004 * 120.02190 * 359.97438 * 6 5 4 34 34 H 1.08006 * 119.97554 * 180.31290 * 7 6 5 35 35 H 1.08999 * 109.46892 * 149.72834 * 9 8 7 36 36 H 1.08996 * 109.47436 * 29.72929 * 9 8 7 37 37 H 1.09001 * 109.47305 * 60.00522 * 10 9 8 38 38 H 1.08996 * 109.47628 * 300.00609 * 10 9 8 39 39 H 1.08999 * 109.47076 * 60.00323 * 11 10 9 40 40 H 1.09004 * 109.47241 * 300.00556 * 11 10 9 41 41 H 0.97002 * 119.99728 * 179.97438 * 15 14 12 42 42 H 1.08007 * 119.97502 * 180.27099 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2465 -1.2250 1.0978 6 6 4.0352 -1.0233 -0.0258 7 6 5.2978 -1.5794 -0.0907 8 6 5.7716 -2.3464 0.9580 9 6 7.1473 -2.9569 0.8819 10 6 7.0538 -4.3475 0.2508 11 6 8.4503 -4.9677 0.1740 12 6 8.3583 -6.3371 -0.4482 13 1 7.3996 -6.7265 -0.7575 14 6 9.4980 -7.0936 -0.6216 15 7 9.4176 -8.2889 -1.1641 16 14 11.1562 -6.4206 -0.0859 17 1 11.4145 -6.8060 1.3248 18 1 12.2220 -6.9807 -0.9551 19 1 11.1503 -4.9401 -0.2015 20 6 4.9876 -2.5491 2.0784 21 6 3.7262 -1.9899 2.1508 22 6 2.8724 -2.2109 3.3728 23 9 3.5672 -3.0070 4.2895 24 9 2.5718 -0.9775 3.9608 25 9 1.6857 -2.8526 3.0026 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 3.6638 -0.4281 -0.8470 34 1 5.9141 -1.4185 -0.9630 35 1 7.5636 -3.0408 1.8857 36 1 7.7925 -2.3240 0.2727 37 1 6.6375 -4.2637 -0.7531 38 1 6.4085 -4.9804 0.8599 39 1 8.8663 -5.0516 1.1780 40 1 9.0960 -4.3349 -0.4350 41 1 10.2195 -8.8209 -1.2864 42 1 5.3616 -3.1448 2.8980 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066713.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:55 Heat of formation + Delta-G solvation = -206.476978 kcal Electronic energy + Delta-G solvation = -26541.258323 eV Core-core repulsion = 22263.121166 eV Total energy + Delta-G solvation = -4278.137158 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.15535 -48.69658 -48.60612 -41.55447 -39.29399 -36.39625 -34.73391 -33.93794 -32.86011 -31.73316 -28.66494 -28.13800 -26.96339 -25.27148 -24.11342 -22.57552 -21.92055 -21.51031 -19.75391 -19.50298 -19.43687 -18.87631 -18.30479 -17.15968 -16.55741 -16.38098 -15.91879 -15.74346 -15.53652 -15.47806 -15.38583 -15.06731 -14.94779 -14.80810 -14.79660 -14.74139 -14.43815 -14.09080 -13.69025 -13.65669 -13.43804 -13.18536 -13.13876 -12.95695 -12.90835 -12.50508 -12.39327 -12.19724 -11.83914 -11.71203 -11.65215 -11.38627 -11.33728 -11.24123 -10.73815 -10.30553 -9.21720 -8.27013 -6.31263 -0.08962 0.24341 1.38969 1.40590 1.52848 1.66176 2.02310 2.38972 2.42256 2.73244 3.01261 3.08792 3.41922 3.72047 3.78742 3.83399 3.93187 4.03358 4.13267 4.20376 4.25959 4.43411 4.50151 4.67333 4.68641 4.71769 4.80250 4.84529 4.89371 4.98266 5.02734 5.09879 5.14647 5.20884 5.23318 5.28096 5.49387 5.56604 5.63022 5.71084 5.72618 6.24742 6.32147 6.77808 7.33490 8.90161 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.017794 B = 0.002965 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.210076 B = 9440.864914 C =10182.893233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.065 3.935 3 C -0.177 4.177 4 O -0.321 6.321 5 C 0.167 3.833 6 C -0.204 4.204 7 C -0.042 4.042 8 C -0.118 4.118 9 C -0.071 4.071 10 C -0.090 4.090 11 C -0.013 4.013 12 C -0.534 4.534 13 H 0.026 0.974 14 C -0.001 4.001 15 N -0.956 5.956 16 Si 0.955 3.045 17 H -0.268 1.268 18 H -0.286 1.286 19 H -0.239 1.239 20 C -0.043 4.043 21 C -0.237 4.237 22 C 0.518 3.482 23 F -0.181 7.181 24 F -0.179 7.179 25 F -0.182 7.182 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.166 0.834 34 H 0.157 0.843 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.049 0.951 38 H 0.040 0.960 39 H 0.020 0.980 40 H 0.026 0.974 41 H 0.265 0.735 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.562 23.638 3.925 28.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.010 3.990 3 C -0.234 4.234 4 O -0.235 6.235 5 C 0.120 3.880 6 C -0.223 4.223 7 C -0.060 4.060 8 C -0.118 4.118 9 C -0.108 4.108 10 C -0.128 4.128 11 C -0.051 4.051 12 C -0.572 4.572 13 H 0.045 0.955 14 C -0.197 4.197 15 N -0.597 5.597 16 Si 0.778 3.222 17 H -0.193 1.193 18 H -0.212 1.212 19 H -0.162 1.162 20 C -0.061 4.061 21 C -0.239 4.239 22 C 0.464 3.536 23 F -0.163 7.163 24 F -0.160 7.160 25 F -0.163 7.163 26 H 0.082 0.918 27 H 0.122 0.878 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.184 0.816 34 H 0.174 0.826 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.038 0.962 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.663 23.514 4.067 28.544 hybrid contribution 0.459 -0.704 0.269 0.883 sum -15.203 22.810 4.336 27.753 Atomic orbital electron populations 1.21895 0.91232 1.03164 1.04146 1.22878 0.96501 0.93319 0.86342 1.22381 1.02030 0.94828 1.04157 1.86175 1.28329 1.67851 1.41171 1.18628 0.85311 0.90817 0.93235 1.21512 0.95628 1.06536 0.98591 1.21428 0.94728 0.92026 0.97808 1.19952 0.97639 0.99937 0.94309 1.20606 0.92307 0.95412 1.02516 1.21325 0.97137 0.94653 0.99643 1.19572 0.95447 0.93866 0.96181 1.21575 0.93928 1.01751 1.39915 0.95523 1.26111 1.04028 0.94845 0.94752 1.70093 1.30577 1.12478 1.46554 0.85594 0.77776 0.80470 0.78409 1.19347 1.21245 1.16216 1.20882 0.90789 0.95573 0.98892 1.19334 0.98163 1.10834 0.95597 1.18087 0.78329 0.73765 0.83390 1.93151 1.79068 1.74741 1.69304 1.93186 1.93706 1.43456 1.85695 1.93187 1.49443 1.82174 1.91518 0.91845 0.87814 0.92385 0.89446 0.91989 0.92016 0.88454 0.81627 0.82556 0.90409 0.89337 0.93233 0.94110 0.96190 0.95545 0.92598 0.83846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.56 71.98 0.69 -0.99 16 2 C 0.06 0.91 2.85 30.59 0.09 0.99 16 3 C -0.18 -1.90 9.17 71.98 0.66 -1.24 16 4 O -0.32 -7.05 8.71 -92.44 -0.81 -7.86 16 5 C 0.17 3.90 6.48 22.51 0.15 4.04 16 6 C -0.20 -3.91 8.25 22.36 0.18 -3.72 16 7 C -0.04 -0.87 9.69 22.25 0.22 -0.66 16 8 C -0.12 -2.95 5.13 -19.85 -0.10 -3.05 16 9 C -0.07 -1.94 5.34 29.85 0.16 -1.78 16 10 C -0.09 -3.33 5.13 30.59 0.16 -3.18 16 11 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 12 C -0.53 -30.94 9.66 25.60 0.25 -30.69 16 13 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 14 C 0.00 -0.08 5.47 84.65 0.46 0.39 16 15 N -0.96 -60.73 13.96 21.45 0.30 -60.43 16 16 Si 0.95 43.89 27.47 68.60 1.88 45.77 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 19 H -0.24 -9.91 6.54 99.48 0.65 -9.26 16 20 C -0.04 -1.13 9.08 22.25 0.20 -0.93 16 21 C -0.24 -6.23 5.38 -19.77 -0.11 -6.34 16 22 C 0.52 14.07 2.99 71.24 0.21 14.29 16 23 F -0.18 -4.93 15.97 44.97 0.72 -4.22 16 24 F -0.18 -4.85 16.95 44.97 0.76 -4.09 16 25 F -0.18 -5.19 16.95 44.97 0.76 -4.43 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.09 1.04 6.31 -2.39 -0.02 1.02 16 30 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.06 0.72 6.92 -2.39 -0.02 0.70 16 32 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.17 2.14 5.43 -2.91 -0.02 2.13 16 34 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.08 2.01 8.08 -2.39 -0.02 1.99 16 36 H 0.09 2.12 8.08 -2.39 -0.02 2.10 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 40 H 0.03 1.14 7.20 -2.38 -0.02 1.12 16 41 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 42 H 0.14 3.60 7.16 -2.91 -0.02 3.58 16 Total: -1.00 -69.81 357.10 7.93 -61.88 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 0.97 Total: 6.72 kcal Atomic # 6 Polarization: -36.69 SS G_CDS: 3.34 Total: -33.35 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: 0.30 Total: -60.43 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.81 Total: -7.86 kcal Atomic # 9 Polarization: -14.97 SS G_CDS: 2.24 Total: -12.73 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.77 kcal Total: -69.81 7.93 -61.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066713.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.594 kcal (2) G-P(sol) polarization free energy of solvation -69.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds