Wall clock time and date at job start Tue Mar 31 2020 11:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50697 * 109.47155 * 2 1 4 4 N 1.30519 * 126.34476 * 269.99752 * 3 2 1 5 5 N 1.28600 * 109.66808 * 179.73098 * 4 3 2 6 6 C 1.30516 * 109.67696 * 0.44987 * 5 4 3 7 7 N 1.35495 * 107.30468 * 359.55808 * 6 5 4 8 8 C 1.46499 * 126.97946 * 180.26092 * 7 6 5 9 9 C 1.53005 * 109.47169 * 265.02611 * 8 7 6 10 10 N 1.46499 * 109.47169 * 180.02562 * 9 8 7 11 11 S 1.65602 * 120.00151 * 165.00202 * 10 9 8 12 12 O 1.42098 * 104.27503 * 181.07439 * 11 10 9 13 13 O 1.42103 * 104.27497 * 308.93233 * 11 10 9 14 14 C 1.81397 * 104.44750 * 65.00180 * 11 10 9 15 15 C 1.52998 * 109.47264 * 180.02562 * 14 11 10 16 16 C 1.52997 * 109.47344 * 179.97438 * 15 14 11 17 17 C 1.50702 * 109.46840 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00419 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99467 * 180.02562 * 17 16 15 20 20 N 1.31506 * 120.00483 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99649 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47451 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47296 * 119.99967 * 21 19 17 24 24 H 1.48503 * 109.46997 * 239.99948 * 21 19 17 25 25 H 1.09000 * 109.47018 * 300.00042 * 1 2 3 26 26 H 1.09000 * 109.46762 * 59.99977 * 1 2 3 27 27 H 1.08997 * 109.46889 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47017 * 239.99477 * 2 1 3 29 29 H 1.09000 * 109.46762 * 120.00023 * 2 1 3 30 30 H 1.08002 * 126.35125 * 179.82818 * 6 5 4 31 31 H 1.08995 * 109.47558 * 25.02911 * 8 7 6 32 32 H 1.09010 * 109.47134 * 145.03037 * 8 7 6 33 33 H 1.08995 * 109.47337 * 300.00057 * 9 8 7 34 34 H 1.08999 * 109.46617 * 60.00686 * 9 8 7 35 35 H 0.97005 * 119.99920 * 345.00268 * 10 9 8 36 36 H 1.09001 * 109.47197 * 299.99987 * 14 11 10 37 37 H 1.09006 * 109.47234 * 60.00100 * 14 11 10 38 38 H 1.09001 * 109.46944 * 300.00070 * 15 14 11 39 39 H 1.09006 * 109.46972 * 59.99868 * 15 14 11 40 40 H 1.08991 * 109.47314 * 299.99898 * 16 15 14 41 41 H 1.09006 * 109.46991 * 60.00128 * 16 15 14 42 42 H 0.97003 * 120.00582 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2903 2.1500 -1.0513 5 7 2.6956 3.3134 -0.6823 6 6 2.7237 3.3759 0.6211 7 7 2.3001 2.1779 1.0913 8 6 2.1599 1.7816 2.4947 9 6 3.4261 1.0516 2.9474 10 7 3.2857 0.6548 4.3506 11 16 4.3208 -0.4611 5.0031 12 8 3.8746 -0.6112 6.3438 13 8 4.2815 -1.5506 4.0916 14 6 5.9441 0.3473 4.9592 15 6 6.9991 -0.5950 5.5422 16 6 8.3684 0.0866 5.5045 17 6 9.4073 -0.8414 6.0794 18 1 9.1199 -1.8196 6.4355 19 6 10.7250 -0.4415 6.1506 20 7 11.0749 0.7499 5.7175 21 14 12.0130 -1.5920 6.8624 22 1 11.3669 -2.8639 7.2750 23 1 13.0474 -1.8735 5.8348 24 1 12.6488 -0.9535 8.0429 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.0244 4.2265 1.2148 31 1 2.0127 2.6692 3.1100 32 1 1.3008 1.1191 2.6012 33 1 3.5733 0.1639 2.3322 34 1 4.2851 1.7141 2.8410 35 1 2.5864 1.0457 4.8976 36 1 6.2025 0.5878 3.9279 37 1 5.9097 1.2638 5.5484 38 1 6.7410 -0.8359 6.5734 39 1 7.0334 -1.5112 4.9526 40 1 8.6263 0.3272 4.4733 41 1 8.3343 1.0030 6.0938 42 1 12.0020 1.0311 5.7672 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320207691.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:12 Heat of formation + Delta-G solvation = -14.344182 kcal Electronic energy + Delta-G solvation = -23938.246053 eV Core-core repulsion = 20274.493498 eV Total energy + Delta-G solvation = -3663.752555 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.46621 -37.38216 -36.96670 -35.96042 -34.78569 -34.77949 -34.08799 -32.26814 -29.89941 -29.15217 -27.91866 -24.85815 -23.90532 -23.79114 -22.62028 -21.01781 -20.69866 -19.49834 -17.98290 -17.33532 -17.00330 -16.62174 -16.15563 -15.99333 -15.76102 -15.35787 -15.15953 -14.73538 -14.51892 -14.31140 -14.27484 -13.33316 -13.04340 -12.74843 -12.59221 -12.36137 -12.29782 -12.13179 -12.10111 -12.01107 -11.91887 -11.72115 -11.63327 -11.36004 -10.98693 -10.93575 -10.65376 -10.58576 -10.51380 -10.05934 -10.01915 -9.49946 -9.44049 -9.17596 -8.46926 -6.11460 -4.14864 0.21497 1.44342 1.94137 2.61071 2.66649 3.25660 3.33487 3.37889 3.70455 3.87131 3.94006 3.96281 4.17231 4.27048 4.37561 4.49626 4.50945 4.76091 4.79483 4.86890 4.97609 5.01730 5.03648 5.09341 5.25250 5.32313 5.40169 5.42827 5.64950 5.69510 5.74892 5.85851 6.14874 6.32757 6.44782 6.54434 6.77232 7.49306 7.58211 7.86093 8.25904 8.44331 8.91539 9.50424 10.99761 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.017127 B = 0.002663 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.414109 B =10512.998635 C =11355.627843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C 0.183 3.817 4 N -0.293 5.293 5 N -0.296 5.296 6 C 0.152 3.848 7 N -0.473 5.473 8 C 0.100 3.900 9 C 0.098 3.902 10 N -1.123 6.123 11 S 2.601 3.399 12 O -0.957 6.957 13 O -0.958 6.958 14 C -0.607 4.607 15 C -0.106 4.106 16 C 0.031 3.969 17 C -0.527 4.527 18 H 0.059 0.941 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.220 0.780 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.417 0.583 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.020 0.980 41 H 0.021 0.979 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.494 3.553 -6.497 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C -0.084 4.084 4 N -0.133 5.133 5 N -0.134 5.134 6 C -0.136 4.136 7 N -0.166 5.166 8 C -0.025 4.025 9 C -0.029 4.029 10 N -0.882 5.882 11 S 2.697 3.303 12 O -0.948 6.948 13 O -0.948 6.948 14 C -0.739 4.739 15 C -0.146 4.146 16 C -0.008 4.008 17 C -0.565 4.565 18 H 0.077 0.923 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.236 0.764 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.251 0.749 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.341 3.153 -7.789 23.869 hybrid contribution 0.880 0.130 1.909 2.106 sum -21.461 3.283 -5.880 22.493 Atomic orbital electron populations 1.21746 0.93431 1.02859 1.02475 1.20111 0.96759 0.86279 1.05250 1.24997 1.02838 0.97869 0.82742 1.74294 1.16385 0.98846 1.23780 1.74279 1.17211 1.12964 1.08971 1.26527 1.03019 0.90440 0.93586 1.46215 1.49643 1.12577 1.08117 1.22090 0.99657 1.02385 0.78344 1.21584 0.97801 1.00961 0.82599 1.55710 1.49447 1.64643 1.18361 1.05391 0.76771 0.74399 0.73739 1.93598 1.79899 1.85066 1.36187 1.93579 1.86372 1.49989 1.64882 1.30534 1.19272 1.13222 1.10872 1.21520 0.96454 0.96781 0.99825 1.19067 0.88125 0.95873 0.97721 1.21273 0.92611 1.01563 1.41099 0.92288 1.25023 0.98725 0.95252 0.95375 1.69956 1.17801 1.18733 1.46874 0.86496 0.81462 0.81013 0.78823 1.19584 1.20897 1.20903 0.92862 0.91730 0.90987 0.87877 0.89461 0.76370 0.87245 0.87563 0.89160 0.90410 0.74943 0.85552 0.85123 0.91444 0.91471 0.96130 0.96108 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.90 37.16 0.37 -0.43 16 2 C -0.04 -0.30 6.19 -27.88 -0.17 -0.47 16 3 C 0.18 1.74 7.28 -154.99 -1.13 0.61 16 4 N -0.29 -3.79 12.21 32.79 0.40 -3.39 16 5 N -0.30 -3.74 12.21 29.69 0.36 -3.37 16 6 C 0.15 1.27 12.74 -89.95 -1.15 0.13 16 7 N -0.47 -3.49 2.75 -115.30 -0.32 -3.81 16 8 C 0.10 0.43 5.96 -4.04 -0.02 0.40 16 9 C 0.10 0.62 6.46 -4.04 -0.03 0.60 16 10 N -1.12 -8.05 5.89 -10.61 -0.06 -8.12 16 11 S 2.60 31.85 5.46 -107.50 -0.59 31.26 16 12 O -0.96 -14.65 18.08 -57.54 -1.04 -15.69 16 13 O -0.96 -14.67 17.50 -57.54 -1.01 -15.67 16 14 C -0.61 -8.23 6.07 37.16 0.23 -8.00 16 15 C -0.11 -2.02 5.16 -26.73 -0.14 -2.16 16 16 C 0.03 0.75 4.97 -27.88 -0.14 0.61 16 17 C -0.53 -14.52 9.11 -34.44 -0.31 -14.84 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 21 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 25 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.50 7.62 -51.93 -0.40 0.10 16 30 H 0.22 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.11 0.33 8.02 -51.92 -0.42 -0.08 16 33 H 0.09 0.68 7.37 -51.93 -0.38 0.30 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.42 1.95 8.62 -34.47 -0.30 1.65 16 36 H 0.13 1.52 8.14 -51.92 -0.42 1.09 16 37 H 0.13 1.55 8.14 -51.92 -0.42 1.12 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -38.46 370.98 -10.07 -48.52 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -6.53 Total: -4.09 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -2.59 Total: -22.03 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 1.12 Total: -44.13 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -2.05 Total: -31.37 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 31.85 SS G_CDS: -0.59 Total: 31.26 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.46 -10.07 -48.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320207691.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.180 kcal (2) G-P(sol) polarization free energy of solvation -38.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds