Wall clock time and date at job start Tue Mar 31 2020 11:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50697 * 109.47155 * 2 1 4 4 N 1.30519 * 126.34476 * 269.99752 * 3 2 1 5 5 N 1.28600 * 109.66808 * 179.73098 * 4 3 2 6 6 C 1.30516 * 109.67696 * 0.44987 * 5 4 3 7 7 N 1.35495 * 107.30468 * 359.55808 * 6 5 4 8 8 C 1.46499 * 126.97946 * 180.26092 * 7 6 5 9 9 C 1.53005 * 109.47169 * 265.02611 * 8 7 6 10 10 N 1.46499 * 109.47169 * 180.02562 * 9 8 7 11 11 S 1.65602 * 120.00151 * 165.00202 * 10 9 8 12 12 O 1.42098 * 104.27503 * 181.07439 * 11 10 9 13 13 O 1.42103 * 104.27497 * 308.93233 * 11 10 9 14 14 C 1.81397 * 104.44750 * 65.00180 * 11 10 9 15 15 C 1.52998 * 109.47264 * 180.02562 * 14 11 10 16 16 C 1.52997 * 109.47344 * 179.97438 * 15 14 11 17 17 C 1.50702 * 109.46840 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00419 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99467 * 180.02562 * 17 16 15 20 20 N 1.31506 * 120.00483 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99649 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47451 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47296 * 119.99967 * 21 19 17 24 24 H 1.48503 * 109.46997 * 239.99948 * 21 19 17 25 25 H 1.09000 * 109.47018 * 300.00042 * 1 2 3 26 26 H 1.09000 * 109.46762 * 59.99977 * 1 2 3 27 27 H 1.08997 * 109.46889 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47017 * 239.99477 * 2 1 3 29 29 H 1.09000 * 109.46762 * 120.00023 * 2 1 3 30 30 H 1.08002 * 126.35125 * 179.82818 * 6 5 4 31 31 H 1.08995 * 109.47558 * 25.02911 * 8 7 6 32 32 H 1.09010 * 109.47134 * 145.03037 * 8 7 6 33 33 H 1.08995 * 109.47337 * 300.00057 * 9 8 7 34 34 H 1.08999 * 109.46617 * 60.00686 * 9 8 7 35 35 H 0.97005 * 119.99920 * 345.00268 * 10 9 8 36 36 H 1.09001 * 109.47197 * 299.99987 * 14 11 10 37 37 H 1.09006 * 109.47234 * 60.00100 * 14 11 10 38 38 H 1.09001 * 109.46944 * 300.00070 * 15 14 11 39 39 H 1.09006 * 109.46972 * 59.99868 * 15 14 11 40 40 H 1.08991 * 109.47314 * 299.99898 * 16 15 14 41 41 H 1.09006 * 109.46991 * 60.00128 * 16 15 14 42 42 H 0.97003 * 120.00582 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2903 2.1500 -1.0513 5 7 2.6956 3.3134 -0.6823 6 6 2.7237 3.3759 0.6211 7 7 2.3001 2.1779 1.0913 8 6 2.1599 1.7816 2.4947 9 6 3.4261 1.0516 2.9474 10 7 3.2857 0.6548 4.3506 11 16 4.3208 -0.4611 5.0031 12 8 3.8746 -0.6112 6.3438 13 8 4.2815 -1.5506 4.0916 14 6 5.9441 0.3473 4.9592 15 6 6.9991 -0.5950 5.5422 16 6 8.3684 0.0866 5.5045 17 6 9.4073 -0.8414 6.0794 18 1 9.1199 -1.8196 6.4355 19 6 10.7250 -0.4415 6.1506 20 7 11.0749 0.7499 5.7175 21 14 12.0130 -1.5920 6.8624 22 1 11.3669 -2.8639 7.2750 23 1 13.0474 -1.8735 5.8348 24 1 12.6488 -0.9535 8.0429 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.0244 4.2265 1.2148 31 1 2.0127 2.6692 3.1100 32 1 1.3008 1.1191 2.6012 33 1 3.5733 0.1639 2.3322 34 1 4.2851 1.7141 2.8410 35 1 2.5864 1.0457 4.8976 36 1 6.2025 0.5878 3.9279 37 1 5.9097 1.2638 5.5484 38 1 6.7410 -0.8359 6.5734 39 1 7.0334 -1.5112 4.9526 40 1 8.6263 0.3272 4.4733 41 1 8.3343 1.0030 6.0938 42 1 12.0020 1.0311 5.7672 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320207691.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:11 Heat of formation + Delta-G solvation = -41.757834 kcal Electronic energy + Delta-G solvation = -23939.434798 eV Core-core repulsion = 20274.493498 eV Total energy + Delta-G solvation = -3664.941300 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.12762 -38.29006 -37.74211 -37.07542 -36.47714 -35.39556 -34.66857 -34.17647 -30.54394 -29.72569 -29.64947 -25.64412 -25.40222 -24.40228 -23.22824 -22.46422 -21.49378 -20.43675 -18.88462 -18.59453 -17.94773 -17.64689 -17.15159 -16.94221 -16.53033 -16.44032 -16.13949 -15.90961 -15.51779 -15.23280 -14.79825 -14.51831 -14.09305 -13.88271 -13.54907 -13.51747 -13.26870 -13.18202 -13.15436 -13.02951 -12.92877 -12.78869 -12.64476 -12.60272 -12.36362 -12.16671 -12.13257 -11.76222 -11.39357 -11.31188 -11.21511 -11.14019 -10.59605 -10.49536 -10.22089 -8.24517 -6.35275 -0.79617 0.83166 1.36037 1.38506 1.39728 1.52403 1.88652 1.89302 2.38439 2.72087 3.09487 3.19415 3.33297 3.52391 3.60936 3.71377 3.78359 3.92517 4.02005 4.21386 4.29112 4.30575 4.37318 4.39098 4.48451 4.56884 4.65306 4.80858 4.88950 4.96344 5.00216 5.06078 5.13329 5.18657 5.32666 5.44527 5.61676 5.78256 5.93060 6.07020 6.18249 6.81090 7.34456 7.74418 8.87053 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.017127 B = 0.002663 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.414109 B =10512.998635 C =11355.627843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.045 4.045 3 C 0.182 3.818 4 N -0.344 5.344 5 N -0.351 5.351 6 C 0.165 3.835 7 N -0.469 5.469 8 C 0.100 3.900 9 C 0.090 3.910 10 N -1.100 6.100 11 S 2.637 3.363 12 O -0.986 6.986 13 O -0.988 6.988 14 C -0.613 4.613 15 C -0.108 4.108 16 C 0.030 3.970 17 C -0.551 4.551 18 H 0.060 0.940 19 C 0.002 3.998 20 N -0.930 5.930 21 Si 0.962 3.038 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.277 1.277 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.259 0.741 31 H 0.146 0.854 32 H 0.123 0.877 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.433 0.567 36 H 0.141 0.859 37 H 0.149 0.851 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.001 0.999 41 H 0.004 0.996 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.727 3.507 -5.272 24.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 C -0.087 4.087 4 N -0.183 5.183 5 N -0.188 5.188 6 C -0.124 4.124 7 N -0.160 5.160 8 C -0.023 4.023 9 C -0.038 4.038 10 N -0.863 5.863 11 S 2.732 3.268 12 O -0.976 6.976 13 O -0.977 6.977 14 C -0.743 4.743 15 C -0.147 4.147 16 C -0.008 4.008 17 C -0.589 4.589 18 H 0.079 0.921 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.786 3.214 22 H -0.187 1.187 23 H -0.204 1.204 24 H -0.202 1.202 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.105 0.895 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.275 0.725 31 H 0.163 0.837 32 H 0.141 0.859 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.271 0.729 36 H 0.160 0.840 37 H 0.168 0.832 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.019 0.981 41 H 0.022 0.978 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.578 3.106 -6.547 24.666 hybrid contribution 1.222 0.188 1.523 1.962 sum -22.356 3.294 -5.024 23.149 Atomic orbital electron populations 1.21713 0.92326 1.03726 1.02201 1.20242 0.97634 0.84932 1.05670 1.25399 1.01867 0.98532 0.82870 1.74183 1.18432 0.99742 1.25948 1.74165 1.19559 1.13583 1.11514 1.27252 1.00817 0.91460 0.92828 1.46335 1.48908 1.11911 1.08832 1.22340 0.98919 1.04211 0.76876 1.21751 0.99585 1.01051 0.81399 1.55084 1.48462 1.63889 1.18904 1.04046 0.76076 0.74106 0.72613 1.93559 1.80180 1.85752 1.38095 1.93547 1.86669 1.51912 1.65594 1.30530 1.19067 1.12941 1.11774 1.21310 0.95332 0.97528 1.00548 1.18966 0.90861 0.95191 0.95802 1.21781 0.93858 1.02185 1.41107 0.92142 1.25925 1.01065 0.96835 0.95754 1.70065 1.18439 1.20454 1.48050 0.85449 0.78630 0.79137 0.78171 1.18711 1.20367 1.20216 0.91912 0.93201 0.89528 0.88411 0.88077 0.72528 0.83660 0.85877 0.90367 0.89393 0.72884 0.84033 0.83243 0.91383 0.91617 0.98050 0.97797 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.90 71.99 0.71 -0.61 16 2 C -0.05 -0.56 6.19 29.85 0.18 -0.37 16 3 C 0.18 3.30 7.28 137.98 1.01 4.30 16 4 N -0.34 -9.04 12.21 -50.16 -0.61 -9.66 16 5 N -0.35 -8.83 12.21 -59.99 -0.73 -9.56 16 6 C 0.16 2.44 12.74 180.11 2.29 4.73 16 7 N -0.47 -5.77 2.75 -518.69 -1.42 -7.19 16 8 C 0.10 0.45 5.96 86.38 0.51 0.97 16 9 C 0.09 0.83 6.46 86.38 0.56 1.39 16 10 N -1.10 -11.96 5.89 -187.49 -1.10 -13.07 16 11 S 2.64 59.12 5.46 -56.49 -0.31 58.81 16 12 O -0.99 -28.26 18.08 -127.65 -2.31 -30.57 16 13 O -0.99 -28.65 17.50 -127.65 -2.23 -30.89 16 14 C -0.61 -15.67 6.07 71.98 0.44 -15.23 16 15 C -0.11 -4.09 5.16 30.59 0.16 -3.93 16 16 C 0.03 1.49 4.97 29.85 0.15 1.64 16 17 C -0.55 -30.69 9.11 25.60 0.23 -30.46 16 18 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 19 C 0.00 0.14 5.46 84.66 0.46 0.60 16 20 N -0.93 -55.04 13.29 21.45 0.28 -54.76 16 21 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 22 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 24 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 25 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.10 0.95 7.62 -2.39 -0.02 0.93 16 30 H 0.26 1.25 8.06 -2.91 -0.02 1.23 16 31 H 0.15 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.12 0.22 8.02 -2.38 -0.02 0.20 16 33 H 0.08 0.98 7.37 -2.39 -0.02 0.96 16 34 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.43 2.21 8.62 -96.74 -0.83 1.38 16 36 H 0.14 3.16 8.14 -2.39 -0.02 3.14 16 37 H 0.15 3.23 8.14 -2.39 -0.02 3.21 16 38 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 40 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 42 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -86.00 370.98 0.48 -85.53 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 0.18 Total: 2.74 kcal Atomic # 6 Polarization: -43.69 SS G_CDS: 6.71 Total: -36.98 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -3.59 Total: -94.24 kcal Atomic # 8 Polarization: -56.91 SS G_CDS: -4.54 Total: -61.45 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 59.12 SS G_CDS: -0.31 Total: 58.81 kcal Total: -86.00 0.48 -85.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320207691.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.768 kcal (2) G-P(sol) polarization free energy of solvation -86.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds