Wall clock time and date at job start Tue Mar 31 2020 11:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47140 * 2 1 4 4 C 1.52999 * 109.46845 * 119.99713 * 2 1 3 5 5 H 1.09003 * 109.47264 * 185.19745 * 4 2 1 6 6 N 1.46501 * 109.46950 * 305.19289 * 4 2 1 7 7 S 1.65608 * 119.99836 * 215.41020 * 6 4 2 8 8 O 1.42092 * 104.27865 * 306.99304 * 7 6 4 9 9 O 1.42103 * 104.27217 * 179.13425 * 7 6 4 10 10 C 1.81402 * 104.44557 * 63.06782 * 7 6 4 11 11 C 1.52996 * 109.47102 * 175.04692 * 10 7 6 12 12 C 1.50703 * 109.47311 * 179.97438 * 11 10 7 13 13 H 1.07990 * 119.99652 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99862 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00193 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99812 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47216 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47153 * 120.00259 * 16 14 12 19 19 H 1.48501 * 109.47151 * 240.00293 * 16 14 12 20 20 C 1.50698 * 109.47199 * 65.19564 * 4 2 1 21 21 N 1.30523 * 126.34789 * 285.02338 * 20 4 2 22 22 N 1.28594 * 109.67303 * 179.97438 * 21 20 4 23 23 C 1.30523 * 109.67524 * 0.02562 * 22 21 20 24 24 N 1.35491 * 126.34334 * 104.71294 * 20 4 2 25 25 C 1.46499 * 126.98284 * 0.03500 * 24 20 4 26 26 H 1.08992 * 109.47412 * 300.00355 * 1 2 3 27 27 H 1.09003 * 109.47266 * 60.00465 * 1 2 3 28 28 H 1.09006 * 109.47230 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47294 * 239.99908 * 2 1 3 30 30 H 1.09006 * 109.47528 * 64.13883 * 3 2 1 31 31 H 1.08997 * 109.47701 * 184.14487 * 3 2 1 32 32 H 1.09007 * 109.46842 * 304.14131 * 3 2 1 33 33 H 0.96997 * 120.00052 * 35.42393 * 6 4 2 34 34 H 1.09008 * 109.46804 * 295.04333 * 10 7 6 35 35 H 1.08993 * 109.47666 * 55.04539 * 10 7 6 36 36 H 1.08999 * 109.47242 * 300.00090 * 11 10 7 37 37 H 1.09003 * 109.47524 * 59.99470 * 11 10 7 38 38 H 0.97007 * 119.99802 * 179.97438 * 15 14 12 39 39 H 1.07998 * 126.34617 * 180.02562 * 23 22 21 40 40 H 1.09010 * 109.47066 * 90.00587 * 25 24 20 41 41 H 1.08997 * 109.47160 * 209.99884 * 25 24 20 42 42 H 1.08992 * 109.47536 * 330.00234 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1259 -0.6413 1.2971 6 7 1.4521 -0.1064 2.4421 7 16 2.3392 0.0111 3.8356 8 8 2.7921 -1.3141 4.0756 9 8 1.4702 0.6654 4.7500 10 6 3.7303 1.0896 3.3968 11 6 4.5659 1.3777 4.6457 12 6 5.7219 2.2732 4.2811 13 1 5.8477 2.6040 3.2608 14 6 6.6182 2.6708 5.2503 15 7 6.4646 2.2683 6.4929 16 14 8.0507 3.7813 4.7986 17 1 7.9988 4.0904 3.3470 18 1 7.9631 5.0433 5.5763 19 1 9.3286 3.0936 5.1133 20 6 1.6454 -2.1743 1.1867 21 7 0.4523 -2.6615 1.3936 22 7 0.4773 -3.9400 1.2580 23 6 1.6876 -4.3267 0.9591 24 7 2.4622 -3.2164 0.8995 25 6 3.8931 -3.1557 0.5913 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.7385 1.9345 0.9248 31 1 3.1274 1.4435 -0.0743 32 1 1.6173 1.9773 -0.8506 33 1 0.5433 0.2315 2.4158 34 1 4.3517 0.5953 2.6500 35 1 3.3496 2.0265 2.9903 36 1 3.9445 1.8719 5.3925 37 1 4.9466 0.4408 5.0523 38 1 7.0955 2.5479 7.1748 39 1 2.0106 -5.3426 0.7859 40 1 4.4675 -3.2439 1.5135 41 1 4.1552 -3.9738 -0.0796 42 1 4.1212 -2.2045 0.1107 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322433088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:37 Heat of formation + Delta-G solvation = -4.055898 kcal Electronic energy + Delta-G solvation = -25686.178106 eV Core-core repulsion = 22022.871684 eV Total energy + Delta-G solvation = -3663.306422 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.16114 -38.06069 -36.60909 -35.48595 -35.10806 -33.97808 -32.69956 -31.25653 -30.66323 -27.84154 -27.32765 -26.40421 -25.67533 -22.40715 -21.74957 -21.55104 -20.16703 -19.03638 -17.66828 -17.45355 -16.63775 -16.45895 -15.99304 -15.61905 -15.19373 -15.10599 -14.76587 -14.59594 -14.44136 -13.83178 -13.52087 -13.35039 -13.21147 -12.62540 -12.55530 -12.18751 -11.85962 -11.82515 -11.65847 -11.61819 -11.56394 -11.33683 -11.16069 -11.08807 -11.03460 -10.96543 -10.48677 -10.46407 -10.39110 -10.21507 -9.97932 -9.68395 -9.25113 -9.12668 -8.57047 -6.18661 -4.24846 0.66663 1.73365 2.37010 2.84447 3.08796 3.20179 3.27829 3.30376 4.00515 4.17434 4.29089 4.31772 4.41234 4.49112 4.54215 4.64011 4.83319 4.84341 5.08209 5.15630 5.16662 5.18803 5.31655 5.47642 5.54431 5.55831 5.67346 5.69237 5.78623 5.82510 5.98692 6.05943 6.15977 6.28121 6.37904 6.74357 7.01770 7.22184 7.28654 7.73858 8.09799 8.72910 8.78843 9.40419 10.92337 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.017091 B = 0.003958 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.857082 B = 7072.951737 C = 7191.130742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 C -0.154 4.154 4 C 0.249 3.751 5 H 0.099 0.901 6 N -1.106 6.106 7 S 2.584 3.416 8 O -0.965 6.965 9 O -0.959 6.959 10 C -0.589 4.589 11 C 0.029 3.971 12 C -0.520 4.520 13 H 0.062 0.938 14 C 0.058 3.942 15 N -0.889 5.889 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.169 3.831 21 N -0.276 5.276 22 N -0.300 5.300 23 C 0.147 3.853 24 N -0.469 5.469 25 C 0.064 3.936 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.420 0.580 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.036 0.964 37 H 0.031 0.969 38 H 0.265 0.735 39 H 0.217 0.783 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.637 -7.602 -17.472 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.112 4.112 3 C -0.211 4.211 4 C 0.137 3.863 5 H 0.117 0.883 6 N -0.863 5.863 7 S 2.681 3.319 8 O -0.955 6.955 9 O -0.949 6.949 10 C -0.722 4.722 11 C -0.010 4.010 12 C -0.560 4.560 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.527 5.527 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.208 1.208 20 C -0.101 4.101 21 N -0.117 5.117 22 N -0.140 5.140 23 C -0.140 4.140 24 N -0.159 5.159 25 C -0.079 4.079 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.257 0.743 34 H 0.134 0.866 35 H 0.143 0.857 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.233 0.767 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.095 -8.185 -16.142 19.440 hybrid contribution 2.313 0.876 -0.838 2.611 sum -4.782 -7.309 -16.979 19.094 Atomic orbital electron populations 1.21895 0.93693 1.03619 1.01824 1.21335 0.97870 0.96696 0.95296 1.21922 1.01425 0.94690 1.03066 1.18894 0.97404 0.82317 0.87639 0.88302 1.55906 1.28263 1.74511 1.27659 1.05910 0.76596 0.76231 0.73144 1.93547 1.82844 1.35768 1.83292 1.93572 1.63930 1.77455 1.59934 1.30489 1.16118 1.14137 1.11498 1.18965 0.94834 0.98754 0.88493 1.21011 1.09373 1.30298 0.95309 0.91932 1.25071 0.98172 0.96296 0.94918 1.69967 1.36986 1.44621 1.01132 0.86424 0.81942 0.80363 0.78607 1.19628 1.20749 1.20812 1.25242 0.88204 0.93276 1.03393 1.74147 1.17736 1.01882 1.17932 1.74236 1.17719 1.04778 1.17270 1.26387 0.88571 0.94032 1.05022 1.46128 1.11225 1.07104 1.51493 1.22238 0.76842 1.05148 1.03683 0.92077 0.92444 0.90872 0.90169 0.91492 0.92017 0.91804 0.74313 0.86552 0.85691 0.94601 0.95060 0.92520 0.76671 0.88990 0.88706 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.67 37.16 0.32 -1.13 16 2 C -0.09 -0.81 2.73 -90.62 -0.25 -1.05 16 3 C -0.15 -1.24 9.13 37.16 0.34 -0.90 16 4 C 0.25 2.84 2.09 -69.08 -0.14 2.70 16 5 H 0.10 0.95 6.21 -51.93 -0.32 0.63 16 6 N -1.11 -14.90 4.69 -5.88 -0.03 -14.93 16 7 S 2.58 46.12 5.38 -107.50 -0.58 45.54 16 8 O -0.96 -19.95 17.86 -57.54 -1.03 -20.97 16 9 O -0.96 -20.36 18.08 -57.54 -1.04 -21.40 16 10 C -0.59 -10.44 5.79 37.16 0.22 -10.23 16 11 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 12 C -0.52 -13.74 9.11 -34.44 -0.31 -14.05 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 16 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 C 0.17 2.25 6.45 -154.99 -1.00 1.25 16 21 N -0.28 -4.39 10.60 32.79 0.35 -4.04 16 22 N -0.30 -4.62 12.21 29.69 0.36 -4.25 16 23 C 0.15 1.67 12.74 -89.93 -1.15 0.52 16 24 N -0.47 -5.14 3.15 -122.69 -0.39 -5.52 16 25 C 0.06 0.42 10.84 59.85 0.65 1.07 16 26 H 0.06 0.58 6.34 -51.93 -0.33 0.25 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.84 6.24 -51.93 -0.32 0.52 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.58 7.65 -51.93 -0.40 0.18 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.42 5.14 6.72 -34.48 -0.23 4.91 16 34 H 0.12 1.74 7.50 -51.92 -0.39 1.35 16 35 H 0.12 1.94 8.14 -51.93 -0.42 1.52 16 36 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.22 1.39 8.06 -52.49 -0.42 0.96 16 40 H 0.09 0.67 8.14 -51.92 -0.42 0.24 16 41 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.09 0.45 7.47 -51.93 -0.39 0.06 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -38.44 359.62 -8.93 -47.37 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.15 Total: 2.24 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -1.56 Total: -19.78 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 1.03 Total: -53.85 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -2.07 Total: -42.37 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 46.12 SS G_CDS: -0.58 Total: 45.54 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -38.44 -8.93 -47.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322433088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.310 kcal (2) G-P(sol) polarization free energy of solvation -38.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds