Wall clock time and date at job start Tue Mar 31 2020 11:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47140 * 2 1 4 4 C 1.52999 * 109.46845 * 119.99713 * 2 1 3 5 5 H 1.09003 * 109.47264 * 185.19745 * 4 2 1 6 6 N 1.46501 * 109.46950 * 305.19289 * 4 2 1 7 7 S 1.65608 * 119.99836 * 215.41020 * 6 4 2 8 8 O 1.42092 * 104.27865 * 306.99304 * 7 6 4 9 9 O 1.42103 * 104.27217 * 179.13425 * 7 6 4 10 10 C 1.81402 * 104.44557 * 63.06782 * 7 6 4 11 11 C 1.52996 * 109.47102 * 175.04692 * 10 7 6 12 12 C 1.50703 * 109.47311 * 179.97438 * 11 10 7 13 13 H 1.07990 * 119.99652 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99862 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00193 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99812 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47216 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47153 * 120.00259 * 16 14 12 19 19 H 1.48501 * 109.47151 * 240.00293 * 16 14 12 20 20 C 1.50698 * 109.47199 * 65.19564 * 4 2 1 21 21 N 1.30523 * 126.34789 * 285.02338 * 20 4 2 22 22 N 1.28594 * 109.67303 * 179.97438 * 21 20 4 23 23 C 1.30523 * 109.67524 * 0.02562 * 22 21 20 24 24 N 1.35491 * 126.34334 * 104.71294 * 20 4 2 25 25 C 1.46499 * 126.98284 * 0.03500 * 24 20 4 26 26 H 1.08992 * 109.47412 * 300.00355 * 1 2 3 27 27 H 1.09003 * 109.47266 * 60.00465 * 1 2 3 28 28 H 1.09006 * 109.47230 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47294 * 239.99908 * 2 1 3 30 30 H 1.09006 * 109.47528 * 64.13883 * 3 2 1 31 31 H 1.08997 * 109.47701 * 184.14487 * 3 2 1 32 32 H 1.09007 * 109.46842 * 304.14131 * 3 2 1 33 33 H 0.96997 * 120.00052 * 35.42393 * 6 4 2 34 34 H 1.09008 * 109.46804 * 295.04333 * 10 7 6 35 35 H 1.08993 * 109.47666 * 55.04539 * 10 7 6 36 36 H 1.08999 * 109.47242 * 300.00090 * 11 10 7 37 37 H 1.09003 * 109.47524 * 59.99470 * 11 10 7 38 38 H 0.97007 * 119.99802 * 179.97438 * 15 14 12 39 39 H 1.07998 * 126.34617 * 180.02562 * 23 22 21 40 40 H 1.09010 * 109.47066 * 90.00587 * 25 24 20 41 41 H 1.08997 * 109.47160 * 209.99884 * 25 24 20 42 42 H 1.08992 * 109.47536 * 330.00234 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1259 -0.6413 1.2971 6 7 1.4521 -0.1064 2.4421 7 16 2.3392 0.0111 3.8356 8 8 2.7921 -1.3141 4.0756 9 8 1.4702 0.6654 4.7500 10 6 3.7303 1.0896 3.3968 11 6 4.5659 1.3777 4.6457 12 6 5.7219 2.2732 4.2811 13 1 5.8477 2.6040 3.2608 14 6 6.6182 2.6708 5.2503 15 7 6.4646 2.2683 6.4929 16 14 8.0507 3.7813 4.7986 17 1 7.9988 4.0904 3.3470 18 1 7.9631 5.0433 5.5763 19 1 9.3286 3.0936 5.1133 20 6 1.6454 -2.1743 1.1867 21 7 0.4523 -2.6615 1.3936 22 7 0.4773 -3.9400 1.2580 23 6 1.6876 -4.3267 0.9591 24 7 2.4622 -3.2164 0.8995 25 6 3.8931 -3.1557 0.5913 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.7385 1.9345 0.9248 31 1 3.1274 1.4435 -0.0743 32 1 1.6173 1.9773 -0.8506 33 1 0.5433 0.2315 2.4158 34 1 4.3517 0.5953 2.6500 35 1 3.3496 2.0265 2.9903 36 1 3.9445 1.8719 5.3925 37 1 4.9466 0.4408 5.0523 38 1 7.0955 2.5479 7.1748 39 1 2.0106 -5.3426 0.7859 40 1 4.4675 -3.2439 1.5135 41 1 4.1552 -3.9738 -0.0796 42 1 4.1212 -2.2045 0.1107 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322433088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:37 Heat of formation + Delta-G solvation = -32.077820 kcal Electronic energy + Delta-G solvation = -25687.393228 eV Core-core repulsion = 22022.871684 eV Total energy + Delta-G solvation = -3664.521543 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.06315 -38.94902 -38.16089 -37.05517 -35.91618 -35.88380 -33.61599 -33.13475 -31.62974 -28.48448 -28.06265 -27.54528 -27.26399 -23.65219 -23.23069 -22.37094 -21.07348 -20.30918 -19.18290 -18.49025 -18.15681 -17.43696 -17.11223 -17.04526 -16.52022 -16.29396 -16.02975 -15.77384 -15.33449 -15.09334 -14.51223 -14.45058 -14.10256 -13.72914 -13.67003 -13.39009 -13.26917 -13.18179 -12.99745 -12.94417 -12.79264 -12.75390 -12.60006 -12.29524 -12.19315 -12.04662 -11.79278 -11.71091 -11.69246 -11.32669 -11.23007 -11.00867 -10.69661 -10.63571 -10.18507 -8.23621 -6.37451 -0.78171 0.86150 1.44091 1.44993 1.57649 1.59488 1.78308 1.97117 2.40264 2.75181 3.10915 3.15849 3.24228 3.53315 3.70871 3.81440 3.93316 3.96007 4.06742 4.18001 4.32862 4.36298 4.42304 4.64136 4.72985 4.74066 4.77732 4.90968 4.95379 5.08250 5.12307 5.22208 5.27364 5.28256 5.30529 5.51879 5.54956 5.71151 5.95954 6.00186 6.07146 6.77409 7.33341 7.78577 8.89002 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.017091 B = 0.003958 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.857082 B = 7072.951737 C = 7191.130742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.080 4.080 3 C -0.157 4.157 4 C 0.240 3.760 5 H 0.122 0.878 6 N -1.092 6.092 7 S 2.601 3.399 8 O -0.997 6.997 9 O -1.000 7.000 10 C -0.576 4.576 11 C 0.020 3.980 12 C -0.531 4.531 13 H 0.084 0.916 14 C -0.005 4.005 15 N -0.937 5.937 16 Si 0.973 3.027 17 H -0.250 1.250 18 H -0.283 1.283 19 H -0.281 1.281 20 C 0.157 3.843 21 N -0.316 5.316 22 N -0.352 5.352 23 C 0.158 3.842 24 N -0.469 5.469 25 C 0.051 3.949 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.426 0.574 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.003 0.997 37 H 0.005 0.995 38 H 0.266 0.734 39 H 0.259 0.741 40 H 0.083 0.917 41 H 0.130 0.870 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.890 -7.018 -20.733 22.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.101 4.101 3 C -0.214 4.214 4 C 0.129 3.871 5 H 0.139 0.861 6 N -0.853 5.853 7 S 2.699 3.301 8 O -0.987 6.987 9 O -0.991 6.991 10 C -0.710 4.710 11 C -0.019 4.019 12 C -0.570 4.570 13 H 0.102 0.898 14 C -0.203 4.203 15 N -0.577 5.577 16 Si 0.797 3.203 17 H -0.173 1.173 18 H -0.209 1.209 19 H -0.206 1.206 20 C -0.114 4.114 21 N -0.156 5.156 22 N -0.192 5.192 23 C -0.130 4.130 24 N -0.158 5.158 25 C -0.090 4.090 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.265 0.735 34 H 0.171 0.829 35 H 0.171 0.829 36 H 0.022 0.978 37 H 0.023 0.977 38 H 0.075 0.925 39 H 0.275 0.725 40 H 0.102 0.898 41 H 0.148 0.852 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.353 -7.606 -19.423 21.535 hybrid contribution 1.744 0.607 0.133 1.851 sum -3.610 -6.998 -19.290 20.835 Atomic orbital electron populations 1.21883 0.94575 1.02283 1.02339 1.21320 0.97053 0.97241 0.94505 1.21976 1.02308 0.93812 1.03300 1.19383 0.98623 0.81615 0.87510 0.86073 1.55440 1.28099 1.74517 1.27242 1.05094 0.76320 0.75281 0.73373 1.93503 1.83458 1.37439 1.84260 1.93509 1.65172 1.78008 1.62367 1.30292 1.15538 1.15916 1.09214 1.18828 0.95206 0.97056 0.90774 1.21541 1.09415 1.29832 0.96221 0.89799 1.26117 1.01445 0.97998 0.94741 1.70125 1.38462 1.46553 1.02575 0.85281 0.77919 0.77800 0.79349 1.17301 1.20916 1.20633 1.25529 0.88186 0.94435 1.03286 1.74041 1.19632 1.02493 1.19470 1.74125 1.20296 1.04984 1.19754 1.27205 0.87622 0.95701 1.02505 1.46403 1.12604 1.06224 1.50618 1.22653 0.74115 1.07959 1.04258 0.92645 0.90837 0.93112 0.88183 0.92298 0.90772 0.90481 0.73536 0.82925 0.82857 0.97839 0.97717 0.92547 0.72490 0.89837 0.85156 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.67 71.98 0.62 -2.09 16 2 C -0.08 -1.19 2.73 -10.80 -0.03 -1.22 16 3 C -0.16 -1.97 9.13 71.98 0.66 -1.31 16 4 C 0.24 4.95 2.09 44.24 0.09 5.04 16 5 H 0.12 1.90 6.21 -2.39 -0.01 1.89 16 6 N -1.09 -28.43 4.69 -172.52 -0.81 -29.24 16 7 S 2.60 92.80 5.38 -56.49 -0.30 92.49 16 8 O -1.00 -41.67 17.86 -127.65 -2.28 -43.94 16 9 O -1.00 -43.71 18.08 -127.65 -2.31 -46.02 16 10 C -0.58 -19.45 5.79 71.98 0.42 -19.03 16 11 C 0.02 1.01 4.98 29.85 0.15 1.16 16 12 C -0.53 -27.47 9.11 25.60 0.23 -27.23 16 13 H 0.08 3.88 7.74 -2.92 -0.02 3.86 16 14 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 15 N -0.94 -55.63 13.29 21.45 0.28 -55.34 16 16 Si 0.97 41.15 29.54 68.60 2.03 43.18 16 17 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 18 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 20 C 0.16 4.00 6.45 137.98 0.89 4.89 16 21 N -0.32 -10.11 10.60 -50.16 -0.53 -10.64 16 22 N -0.35 -10.84 12.21 -59.98 -0.73 -11.57 16 23 C 0.16 3.33 12.74 180.11 2.30 5.62 16 24 N -0.47 -9.28 3.15 -542.07 -1.71 -10.99 16 25 C 0.05 0.50 10.84 127.77 1.38 1.88 16 26 H 0.05 1.01 6.34 -2.39 -0.02 1.00 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.05 1.16 6.24 -2.38 -0.01 1.14 16 29 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 0.84 7.65 -2.38 -0.02 0.82 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.43 10.31 6.72 -96.74 -0.65 9.66 16 34 H 0.15 4.01 7.50 -2.39 -0.02 3.99 16 35 H 0.15 4.32 8.14 -2.39 -0.02 4.30 16 36 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.27 14.79 8.31 -92.70 -0.77 14.01 16 39 H 0.26 2.58 8.06 -2.91 -0.02 2.56 16 40 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.11 0.62 7.47 -2.39 -0.02 0.61 16 Total: -1.00 -87.30 359.62 1.20 -86.11 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.38 Total: 18.06 kcal Atomic # 6 Polarization: -39.27 SS G_CDS: 7.17 Total: -32.09 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -3.49 Total: -117.78 kcal Atomic # 8 Polarization: -85.37 SS G_CDS: -4.59 Total: -89.96 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 16 Polarization: 92.80 SS G_CDS: -0.30 Total: 92.49 kcal Total: -87.30 1.20 -86.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322433088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.028 kcal (2) G-P(sol) polarization free energy of solvation -87.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds