Wall clock time and date at job start Tue Mar 31 2020 11:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47149 * 2 1 4 4 N 1.46500 * 109.47459 * 239.99931 * 2 1 3 5 5 C 1.35492 * 126.97787 * 63.24025 * 4 2 1 6 6 N 1.30519 * 107.30814 * 179.84060 * 5 4 2 7 7 N 1.28601 * 109.66863 * 0.43705 * 6 5 4 8 8 C 1.30517 * 109.67403 * 359.72305 * 7 6 5 9 9 C 1.50699 * 126.34460 * 179.97438 * 8 7 6 10 10 N 1.46496 * 109.47019 * 84.53090 * 9 8 7 11 11 C 1.46504 * 120.00005 * 85.36178 * 10 9 8 12 12 S 1.65601 * 120.00225 * 265.36106 * 10 9 8 13 13 O 1.42101 * 104.27561 * 211.68015 * 12 10 9 14 14 O 1.42103 * 104.27240 * 339.53769 * 12 10 9 15 15 C 1.81398 * 104.44948 * 95.60779 * 12 10 9 16 16 C 1.52998 * 109.46836 * 184.64376 * 15 12 10 17 17 C 1.50706 * 109.46686 * 180.02562 * 16 15 12 18 18 H 1.07997 * 120.00340 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99569 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00450 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99807 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47104 * 59.99925 * 21 19 17 23 23 H 1.48502 * 109.47171 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46937 * 300.00029 * 21 19 17 25 25 H 1.08997 * 109.46977 * 175.00579 * 1 2 3 26 26 H 1.09007 * 109.46626 * 55.01053 * 1 2 3 27 27 H 1.08998 * 109.47249 * 295.00918 * 1 2 3 28 28 H 1.08999 * 109.46610 * 120.00028 * 2 1 3 29 29 H 1.09000 * 109.46973 * 60.00149 * 3 2 1 30 30 H 1.08997 * 109.47224 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47426 * 300.00094 * 3 2 1 32 32 H 1.08001 * 126.34980 * 359.97438 * 5 4 2 33 33 H 1.09001 * 109.46893 * 204.52933 * 9 8 7 34 34 H 1.09000 * 109.47146 * 324.52915 * 9 8 7 35 35 H 1.09000 * 109.47492 * 89.99748 * 11 10 9 36 36 H 1.09005 * 109.47380 * 210.00269 * 11 10 9 37 37 H 1.09004 * 109.46906 * 329.99946 * 11 10 9 38 38 H 1.08993 * 109.47079 * 304.64841 * 15 12 10 39 39 H 1.09002 * 109.47302 * 64.64467 * 15 12 10 40 40 H 1.09002 * 109.47531 * 299.99842 * 16 15 12 41 41 H 1.08996 * 109.47020 * 60.00409 * 16 15 12 42 42 H 0.96994 * 119.99964 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 1.8307 -0.3191 -2.4855 6 7 2.4298 -1.2033 -3.2356 7 7 2.9698 -2.1050 -2.4945 8 6 2.7446 -1.8337 -1.2379 9 6 3.2061 -2.6425 -0.0530 10 7 4.5745 -2.2556 0.2991 11 6 4.8077 -1.1078 1.1792 12 16 5.8577 -3.1155 -0.2976 13 8 6.8441 -3.0253 0.7212 14 8 5.2983 -4.3685 -0.6670 15 6 6.3766 -2.1913 -1.7697 16 6 7.4941 -2.9547 -2.4834 17 6 7.9256 -2.1866 -3.7061 18 1 7.4507 -1.2476 -3.9495 19 6 8.9268 -2.6826 -4.5140 20 7 9.5049 -3.8262 -4.2179 21 14 9.4623 -1.7301 -6.0291 22 1 9.9598 -0.3915 -5.6221 23 1 10.5468 -2.4711 -6.7220 24 1 8.3063 -1.5703 -6.9475 25 1 -0.3633 -1.0237 -0.0895 26 1 -0.3633 0.5893 -0.8420 27 1 -0.3634 0.4344 0.9313 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.2879 0.5492 -2.8289 33 1 2.5461 -2.4551 0.7940 34 1 3.1817 -3.7027 -0.3050 35 1 4.8303 -1.4435 2.2160 36 1 5.7612 -0.6439 0.9266 37 1 4.0049 -0.3818 1.0499 38 1 5.5280 -2.0752 -2.4437 39 1 6.7411 -1.2082 -1.4718 40 1 8.3429 -3.0708 -1.8094 41 1 7.1296 -3.9378 -2.7814 42 1 10.2094 -4.1749 -4.7861 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326087076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:59 Heat of formation + Delta-G solvation = 6.995220 kcal Electronic energy + Delta-G solvation = -25630.766213 eV Core-core repulsion = 21967.939004 eV Total energy + Delta-G solvation = -3662.827209 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.23852 -37.16075 -36.66816 -36.42798 -35.39533 -33.76679 -31.92264 -31.16338 -31.02437 -28.01543 -27.79093 -25.57546 -25.03373 -23.99612 -21.73759 -21.45318 -20.51036 -18.62637 -17.64634 -17.40499 -16.56914 -16.41693 -15.83720 -15.59311 -15.52582 -14.97995 -14.54013 -14.47334 -14.39480 -13.85310 -13.46398 -13.27528 -13.13593 -12.93878 -12.87340 -12.45329 -12.37928 -12.09524 -11.81906 -11.65245 -11.55366 -11.39709 -11.35487 -11.31415 -10.96201 -10.86543 -10.38511 -10.36493 -10.33214 -10.20627 -9.74952 -9.40959 -9.29858 -8.89376 -8.38325 -6.00874 -4.05059 0.74378 1.66177 2.22703 2.78118 3.12188 3.36262 3.40037 3.43371 3.90956 4.06330 4.24841 4.28601 4.32513 4.40681 4.47900 4.57165 4.57674 4.88552 4.90528 4.96653 5.07126 5.08656 5.27392 5.34330 5.37081 5.39149 5.42623 5.50610 5.59935 5.64235 5.74078 5.82453 5.96525 6.07739 6.44246 6.65052 6.73037 7.41165 7.49705 7.92709 8.30531 8.73570 8.97371 9.58600 11.10391 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.004471 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.848308 B = 6261.383704 C = 7340.103525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.123 3.877 3 C -0.165 4.165 4 N -0.465 5.465 5 C 0.150 3.850 6 N -0.288 5.288 7 N -0.270 5.270 8 C 0.148 3.852 9 C 0.204 3.796 10 N -1.004 6.004 11 C 0.092 3.908 12 S 2.585 3.415 13 O -0.964 6.964 14 O -0.953 6.953 15 C -0.584 4.584 16 C 0.032 3.968 17 C -0.514 4.514 18 H 0.059 0.941 19 C 0.058 3.942 20 N -0.892 5.892 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.213 0.787 33 H 0.096 0.904 34 H 0.132 0.868 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.130 0.870 39 H 0.112 0.888 40 H 0.029 0.971 41 H 0.036 0.964 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.375 11.651 13.733 27.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.020 3.980 3 C -0.223 4.223 4 N -0.157 5.157 5 C -0.137 4.137 6 N -0.127 5.127 7 N -0.111 5.111 8 C -0.121 4.121 9 C 0.075 3.925 10 N -0.839 5.839 11 C -0.053 4.053 12 S 2.684 3.316 13 O -0.954 6.954 14 O -0.944 6.944 15 C -0.718 4.718 16 C -0.007 4.007 17 C -0.553 4.553 18 H 0.078 0.922 19 C -0.144 4.144 20 N -0.531 5.531 21 Si 0.726 3.274 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.200 1.200 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.124 0.876 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.230 0.770 33 H 0.114 0.886 34 H 0.150 0.850 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.148 0.852 39 H 0.131 0.869 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.416 10.027 12.917 25.384 hybrid contribution -0.362 2.018 -0.202 2.060 sum -19.777 12.045 12.715 26.417 Atomic orbital electron populations 1.22198 0.92699 1.03537 1.03688 1.21607 0.95818 0.94380 0.86209 1.22216 1.02652 0.93665 1.03770 1.46539 1.40613 1.20347 1.08226 1.26328 1.04204 1.03021 0.80197 1.74383 1.10695 1.01221 1.26393 1.74431 1.18295 1.19752 0.98579 1.25641 0.98863 0.89446 0.98142 1.19581 0.83211 0.99043 0.90630 1.57906 1.18550 1.45478 1.61930 1.21499 1.01976 0.87623 0.94230 1.06000 0.72934 0.75513 0.77134 1.93538 1.59014 1.86919 1.55942 1.93535 1.76743 1.39204 1.84872 1.30438 1.11495 1.12787 1.17091 1.18932 0.90061 0.95633 0.96072 1.20941 1.19281 1.06812 1.08285 0.92242 1.25040 0.96202 0.95103 0.98055 1.69947 1.25396 1.18995 1.38749 0.86545 0.78300 0.79761 0.82770 1.20229 1.21106 1.19974 0.91461 0.91418 0.90118 0.87581 0.90003 0.91234 0.91336 0.77017 0.88615 0.84979 0.91844 0.90780 0.92038 0.85224 0.86949 0.95271 0.94538 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.59 9.27 37.16 0.34 -0.24 16 2 C 0.12 0.64 3.06 -67.93 -0.21 0.43 16 3 C -0.17 -0.68 9.14 37.16 0.34 -0.34 16 4 N -0.46 -4.45 2.60 -108.22 -0.28 -4.73 16 5 C 0.15 1.65 11.90 -89.95 -1.07 0.58 16 6 N -0.29 -4.72 12.21 29.69 0.36 -4.36 16 7 N -0.27 -4.74 11.41 32.79 0.37 -4.37 16 8 C 0.15 1.95 7.61 -154.99 -1.18 0.77 16 9 C 0.20 2.38 5.89 -5.20 -0.03 2.35 16 10 N -1.00 -13.51 3.10 -123.05 -0.38 -13.89 16 11 C 0.09 0.91 10.23 59.85 0.61 1.52 16 12 S 2.59 49.55 5.36 -107.50 -0.58 48.98 16 13 O -0.96 -20.34 17.30 -57.54 -1.00 -21.34 16 14 O -0.95 -20.63 16.42 -57.54 -0.94 -21.57 16 15 C -0.58 -12.58 6.12 37.16 0.23 -12.35 16 16 C 0.03 0.88 4.98 -27.88 -0.14 0.74 16 17 C -0.51 -15.12 9.11 -34.44 -0.31 -15.43 16 18 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -27.60 13.29 55.43 0.74 -26.86 16 21 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.23 8.14 -51.92 -0.42 -0.19 16 27 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.11 0.44 5.89 -51.93 -0.31 0.13 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.39 7.69 -51.93 -0.40 -0.01 16 31 H 0.07 0.27 7.92 -51.93 -0.41 -0.14 16 32 H 0.21 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.10 0.68 7.00 -51.93 -0.36 0.32 16 34 H 0.13 1.72 6.76 -51.93 -0.35 1.37 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.77 7.94 -51.93 -0.41 0.36 16 37 H 0.06 0.42 6.14 -51.93 -0.32 0.10 16 38 H 0.13 2.83 7.32 -51.93 -0.38 2.45 16 39 H 0.11 2.18 8.14 -51.92 -0.42 1.76 16 40 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 361.21 15.07 5.44 5.44 Total: -1.00 -39.56 361.21 -9.09 -48.65 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -6.29 Total: -2.90 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -1.51 Total: -20.35 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.81 Total: -54.21 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -1.94 Total: -42.91 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 49.55 SS G_CDS: -0.58 Total: 48.98 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -39.56 -9.09 -48.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326087076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.642 kcal (2) G-P(sol) polarization free energy of solvation -39.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds