Wall clock time and date at job start Tue Mar 31 2020 11:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47149 * 2 1 4 4 N 1.46500 * 109.47459 * 239.99931 * 2 1 3 5 5 C 1.35492 * 126.97787 * 63.24025 * 4 2 1 6 6 N 1.30519 * 107.30814 * 179.84060 * 5 4 2 7 7 N 1.28601 * 109.66863 * 0.43705 * 6 5 4 8 8 C 1.30517 * 109.67403 * 359.72305 * 7 6 5 9 9 C 1.50699 * 126.34460 * 179.97438 * 8 7 6 10 10 N 1.46496 * 109.47019 * 84.53090 * 9 8 7 11 11 C 1.46504 * 120.00005 * 85.36178 * 10 9 8 12 12 S 1.65601 * 120.00225 * 265.36106 * 10 9 8 13 13 O 1.42101 * 104.27561 * 211.68015 * 12 10 9 14 14 O 1.42103 * 104.27240 * 339.53769 * 12 10 9 15 15 C 1.81398 * 104.44948 * 95.60779 * 12 10 9 16 16 C 1.52998 * 109.46836 * 184.64376 * 15 12 10 17 17 C 1.50706 * 109.46686 * 180.02562 * 16 15 12 18 18 H 1.07997 * 120.00340 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99569 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00450 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99807 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47104 * 59.99925 * 21 19 17 23 23 H 1.48502 * 109.47171 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46937 * 300.00029 * 21 19 17 25 25 H 1.08997 * 109.46977 * 175.00579 * 1 2 3 26 26 H 1.09007 * 109.46626 * 55.01053 * 1 2 3 27 27 H 1.08998 * 109.47249 * 295.00918 * 1 2 3 28 28 H 1.08999 * 109.46610 * 120.00028 * 2 1 3 29 29 H 1.09000 * 109.46973 * 60.00149 * 3 2 1 30 30 H 1.08997 * 109.47224 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47426 * 300.00094 * 3 2 1 32 32 H 1.08001 * 126.34980 * 359.97438 * 5 4 2 33 33 H 1.09001 * 109.46893 * 204.52933 * 9 8 7 34 34 H 1.09000 * 109.47146 * 324.52915 * 9 8 7 35 35 H 1.09000 * 109.47492 * 89.99748 * 11 10 9 36 36 H 1.09005 * 109.47380 * 210.00269 * 11 10 9 37 37 H 1.09004 * 109.46906 * 329.99946 * 11 10 9 38 38 H 1.08993 * 109.47079 * 304.64841 * 15 12 10 39 39 H 1.09002 * 109.47302 * 64.64467 * 15 12 10 40 40 H 1.09002 * 109.47531 * 299.99842 * 16 15 12 41 41 H 1.08996 * 109.47020 * 60.00409 * 16 15 12 42 42 H 0.96994 * 119.99964 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 1.8307 -0.3191 -2.4855 6 7 2.4298 -1.2033 -3.2356 7 7 2.9698 -2.1050 -2.4945 8 6 2.7446 -1.8337 -1.2379 9 6 3.2061 -2.6425 -0.0530 10 7 4.5745 -2.2556 0.2991 11 6 4.8077 -1.1078 1.1792 12 16 5.8577 -3.1155 -0.2976 13 8 6.8441 -3.0253 0.7212 14 8 5.2983 -4.3685 -0.6670 15 6 6.3766 -2.1913 -1.7697 16 6 7.4941 -2.9547 -2.4834 17 6 7.9256 -2.1866 -3.7061 18 1 7.4507 -1.2476 -3.9495 19 6 8.9268 -2.6826 -4.5140 20 7 9.5049 -3.8262 -4.2179 21 14 9.4623 -1.7301 -6.0291 22 1 9.9598 -0.3915 -5.6221 23 1 10.5468 -2.4711 -6.7220 24 1 8.3063 -1.5703 -6.9475 25 1 -0.3633 -1.0237 -0.0895 26 1 -0.3633 0.5893 -0.8420 27 1 -0.3634 0.4344 0.9313 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.2879 0.5492 -2.8289 33 1 2.5461 -2.4551 0.7940 34 1 3.1817 -3.7027 -0.3050 35 1 4.8303 -1.4435 2.2160 36 1 5.7612 -0.6439 0.9266 37 1 4.0049 -0.3818 1.0499 38 1 5.5280 -2.0752 -2.4437 39 1 6.7411 -1.2082 -1.4718 40 1 8.3429 -3.0708 -1.8094 41 1 7.1296 -3.9378 -2.7814 42 1 10.2094 -4.1749 -4.7861 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326087076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:58 Heat of formation + Delta-G solvation = -21.583935 kcal Electronic energy + Delta-G solvation = -25632.005498 eV Core-core repulsion = 21967.939004 eV Total energy + Delta-G solvation = -3664.066494 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.15214 -38.29845 -37.92891 -37.34652 -37.01061 -35.92408 -33.15925 -32.67508 -32.02610 -28.79374 -28.17983 -27.64548 -26.14044 -24.68734 -23.56173 -22.51511 -21.32517 -19.99802 -19.18819 -18.44199 -18.09800 -17.67717 -17.14131 -16.90274 -16.55925 -16.31749 -15.88943 -15.72449 -15.22626 -15.07769 -14.52308 -14.29371 -14.15005 -14.04579 -13.77203 -13.62191 -13.49446 -13.23493 -13.13932 -12.95062 -12.86679 -12.77112 -12.64932 -12.45142 -12.34554 -12.25899 -12.19064 -11.99193 -11.80020 -11.29143 -11.24852 -11.06617 -10.66281 -10.40601 -10.22989 -8.27907 -6.41835 -0.80353 0.76583 1.35951 1.41235 1.49110 1.50382 1.64370 1.98411 2.36027 2.70269 3.04381 3.09119 3.24622 3.51419 3.55638 3.73990 3.91260 3.94306 4.04546 4.06522 4.10867 4.40498 4.51979 4.55362 4.61772 4.69606 4.70367 4.79481 4.83625 4.84788 4.90622 4.99502 5.13855 5.22545 5.23276 5.28166 5.31786 5.43632 5.65001 6.01326 6.04841 6.69022 7.27307 7.76848 8.84457 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.004471 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.848308 B = 6261.383704 C = 7340.103525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.114 3.886 3 C -0.164 4.164 4 N -0.451 5.451 5 C 0.170 3.830 6 N -0.350 5.350 7 N -0.334 5.334 8 C 0.148 3.852 9 C 0.200 3.800 10 N -0.990 5.990 11 C 0.078 3.922 12 S 2.616 3.384 13 O -0.982 6.982 14 O -0.983 6.983 15 C -0.590 4.590 16 C 0.028 3.972 17 C -0.540 4.540 18 H 0.064 0.936 19 C -0.001 4.001 20 N -0.932 5.932 21 Si 0.973 3.027 22 H -0.261 1.261 23 H -0.277 1.277 24 H -0.269 1.269 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.105 0.895 28 H 0.125 0.875 29 H 0.108 0.892 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.254 0.746 33 H 0.154 0.846 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.009 0.991 41 H 0.004 0.996 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.412 14.635 15.428 30.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.013 3.987 3 C -0.221 4.221 4 N -0.143 5.143 5 C -0.119 4.119 6 N -0.189 5.189 7 N -0.175 5.175 8 C -0.124 4.124 9 C 0.072 3.928 10 N -0.828 5.828 11 C -0.066 4.066 12 S 2.712 3.288 13 O -0.973 6.973 14 O -0.973 6.973 15 C -0.722 4.722 16 C -0.010 4.010 17 C -0.579 4.579 18 H 0.082 0.918 19 C -0.199 4.199 20 N -0.571 5.571 21 Si 0.796 3.204 22 H -0.185 1.185 23 H -0.201 1.201 24 H -0.194 1.194 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.123 0.877 28 H 0.142 0.858 29 H 0.126 0.874 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.269 0.731 33 H 0.171 0.829 34 H 0.132 0.868 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.027 0.973 41 H 0.022 0.978 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.448 13.041 14.613 29.045 hybrid contribution 0.121 1.163 -0.606 1.317 sum -21.327 14.204 14.007 29.202 Atomic orbital electron populations 1.22197 0.91178 1.03116 1.05174 1.22100 0.97004 0.94822 0.84787 1.22247 1.01737 0.92929 1.05235 1.46777 1.39205 1.19126 1.09164 1.26998 1.02082 1.02468 0.80358 1.74241 1.13301 1.02961 1.28399 1.74298 1.20638 1.21743 1.00842 1.25705 0.98921 0.90505 0.97233 1.19916 0.82670 0.98038 0.92203 1.57405 1.17724 1.46334 1.61373 1.21921 1.03252 0.86972 0.94425 1.04741 0.73403 0.74888 0.75750 1.93506 1.60904 1.87216 1.55627 1.93492 1.77409 1.41227 1.85177 1.30383 1.09342 1.13575 1.18861 1.18738 0.91319 0.94886 0.96093 1.21374 1.19785 1.07295 1.09398 0.91809 1.26089 0.96083 0.96104 1.01645 1.70084 1.25989 1.20722 1.40299 0.85383 0.78052 0.78747 0.78190 1.18522 1.20143 1.19394 0.92626 0.91162 0.87656 0.85769 0.87380 0.92620 0.91162 0.73056 0.82879 0.86811 0.89604 0.91460 0.88236 0.85766 0.85162 0.97276 0.97791 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.46 9.27 71.98 0.67 0.20 16 2 C 0.11 0.68 3.06 44.99 0.14 0.82 16 3 C -0.16 -0.62 9.14 71.98 0.66 0.03 16 4 N -0.45 -7.49 2.60 -496.28 -1.29 -8.78 16 5 C 0.17 3.45 11.90 180.11 2.14 5.59 16 6 N -0.35 -11.67 12.21 -59.99 -0.73 -12.40 16 7 N -0.33 -12.08 11.41 -50.16 -0.57 -12.65 16 8 C 0.15 3.73 7.61 137.98 1.05 4.78 16 9 C 0.20 4.27 5.89 85.63 0.50 4.77 16 10 N -0.99 -24.97 3.10 -543.21 -1.68 -26.65 16 11 C 0.08 1.28 10.23 127.77 1.31 2.59 16 12 S 2.62 102.11 5.36 -56.49 -0.30 101.81 16 13 O -0.98 -41.69 17.30 -127.65 -2.21 -43.90 16 14 O -0.98 -44.22 16.42 -127.65 -2.10 -46.32 16 15 C -0.59 -26.49 6.12 71.98 0.44 -26.05 16 16 C 0.03 1.65 4.98 29.85 0.15 1.80 16 17 C -0.54 -32.93 9.11 25.60 0.23 -32.70 16 18 H 0.06 3.72 7.74 -2.91 -0.02 3.70 16 19 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 20 N -0.93 -59.59 13.29 21.45 0.28 -59.31 16 21 Si 0.97 46.44 29.54 68.60 2.03 48.47 16 22 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.07 0.20 8.14 -2.38 -0.02 0.18 16 27 H 0.10 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H 0.12 0.31 5.89 -2.39 -0.01 0.30 16 29 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.05 0.40 7.69 -2.39 -0.02 0.38 16 31 H 0.07 0.27 7.92 -2.39 -0.02 0.25 16 32 H 0.25 2.56 8.06 -2.91 -0.02 2.54 16 33 H 0.15 1.49 7.00 -2.39 -0.02 1.48 16 34 H 0.11 2.93 6.76 -2.39 -0.02 2.92 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.24 7.94 -2.38 -0.02 1.22 16 37 H 0.10 0.88 6.14 -2.39 -0.01 0.87 16 38 H 0.12 5.72 7.32 -2.39 -0.02 5.70 16 39 H 0.13 5.18 8.14 -2.39 -0.02 5.16 16 40 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -92.71 361.21 2.19 -90.52 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 1.01 Total: 6.97 kcal Atomic # 6 Polarization: -45.51 SS G_CDS: 7.75 Total: -37.76 kcal Atomic # 7 Polarization: -115.80 SS G_CDS: -3.99 Total: -119.79 kcal Atomic # 8 Polarization: -85.91 SS G_CDS: -4.30 Total: -90.21 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 16 Polarization: 102.11 SS G_CDS: -0.30 Total: 101.81 kcal Total: -92.71 2.19 -90.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326087076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.937 kcal (2) G-P(sol) polarization free energy of solvation -92.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds