Wall clock time and date at job start Tue Mar 31 2020 11:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30500 * 125.65399 * 2 1 4 4 C 1.34125 * 109.25628 * 180.28789 * 3 2 1 5 5 C 1.34675 * 108.02035 * 359.72168 * 4 3 2 6 6 N 1.35043 * 125.64261 * 179.81397 * 2 1 3 7 7 C 1.46499 * 126.40580 * 359.97438 * 6 2 1 8 8 C 1.52999 * 109.46799 * 84.70838 * 7 6 2 9 9 C 1.53008 * 109.46737 * 180.02562 * 8 7 6 10 10 S 1.81398 * 109.46775 * 180.02562 * 9 8 7 11 11 C 1.81407 * 102.99840 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47051 * 180.02562 * 11 10 9 13 13 C 1.38628 * 119.74810 * 269.72418 * 12 11 10 14 14 C 1.37613 * 120.24936 * 179.72350 * 13 12 11 15 15 C 1.40717 * 119.74184 * 0.57298 * 14 13 12 16 16 C 1.41402 * 120.24497 * 179.68235 * 15 14 13 17 17 H 1.07993 * 119.99752 * 204.40782 * 16 15 14 18 18 C 1.39949 * 119.99674 * 24.40829 * 16 15 14 19 19 N 1.30822 * 120.00107 * 17.84446 * 18 16 15 20 20 Si 1.86795 * 119.99602 * 197.84743 * 18 16 15 21 21 H 1.48500 * 109.47673 * 59.99990 * 20 18 16 22 22 H 1.48500 * 109.47228 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47354 * 299.99968 * 20 18 16 24 24 C 1.40712 * 119.51145 * 359.70007 * 15 14 13 25 25 C 1.37614 * 119.74704 * 0.02562 * 24 15 14 26 26 H 1.08997 * 109.47329 * 270.18620 * 1 2 3 27 27 H 1.09003 * 109.46841 * 30.18209 * 1 2 3 28 28 H 1.08997 * 109.47036 * 150.17431 * 1 2 3 29 29 H 1.07999 * 125.98934 * 179.72463 * 4 3 2 30 30 H 1.07997 * 126.59109 * 179.97438 * 5 4 3 31 31 H 1.09007 * 109.46505 * 324.71395 * 7 6 2 32 32 H 1.08991 * 109.47152 * 204.71217 * 7 6 2 33 33 H 1.08997 * 109.47069 * 60.00857 * 8 7 6 34 34 H 1.09000 * 109.47712 * 300.00284 * 8 7 6 35 35 H 1.09000 * 109.46889 * 300.00344 * 9 8 7 36 36 H 1.08997 * 109.47004 * 60.00372 * 9 8 7 37 37 H 1.08998 * 109.46657 * 300.00059 * 11 10 9 38 38 H 1.08994 * 109.47021 * 59.99880 * 11 10 9 39 39 H 1.08003 * 119.87855 * 359.97438 * 13 12 11 40 40 H 1.08003 * 120.13227 * 180.28161 * 14 13 12 41 41 H 0.97000 * 119.99356 * 179.97438 * 19 18 16 42 42 H 1.08006 * 120.12740 * 179.97438 * 24 15 14 43 43 H 1.07998 * 119.87991 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6818 -0.0064 5 6 3.5926 -0.6645 -0.0042 6 7 2.2940 -1.0974 0.0036 7 6 1.8424 -2.4911 0.0086 8 6 1.5582 -2.9402 -1.4261 9 6 1.0860 -4.3956 -1.4207 10 16 0.7497 -4.9284 -3.1218 11 6 0.2106 -6.6477 -2.9119 12 6 -0.1110 -7.2414 -4.2592 13 6 -1.3990 -7.1467 -4.7629 14 6 -1.7027 -7.6801 -5.9946 15 6 -0.7027 -8.3342 -6.7378 16 6 -1.0046 -8.8920 -8.0016 17 1 -0.4059 -9.7020 -8.3912 18 6 -2.0793 -8.3945 -8.7473 19 7 -2.5822 -7.2199 -8.4666 20 14 -2.7957 -9.4079 -10.1435 21 1 -3.2966 -10.7004 -9.6108 22 1 -3.9174 -8.6636 -10.7704 23 1 -1.7432 -9.6655 -11.1589 24 6 0.5998 -8.4293 -6.2140 25 6 0.8821 -7.8835 -4.9827 26 1 -0.3634 0.0033 1.0276 27 1 -0.3633 0.8884 -0.5167 28 1 -0.3633 -0.8915 -0.5111 29 1 4.4099 1.3409 -0.0121 30 1 4.4775 -1.2834 -0.0084 31 1 0.9326 -2.5760 0.6029 32 1 2.6186 -3.1229 0.4401 33 1 2.4680 -2.8553 -2.0204 34 1 0.7820 -2.3084 -1.8577 35 1 1.8620 -5.0277 -0.9890 36 1 0.1761 -4.4802 -0.8266 37 1 1.0080 -7.2237 -2.4423 38 1 -0.6777 -6.6754 -2.2808 39 1 -2.1661 -6.6488 -4.1884 40 1 -2.7057 -7.6012 -6.3872 41 1 -3.3268 -6.8750 -8.9838 42 1 1.3749 -8.9295 -6.7758 43 1 1.8810 -7.9556 -4.5784 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331831646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:43 Heat of formation + Delta-G solvation = 57.158669 kcal Electronic energy + Delta-G solvation = -21854.626300 eV Core-core repulsion = 18604.823604 eV Total energy + Delta-G solvation = -3249.802696 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.29632 -37.69266 -36.00923 -34.07201 -32.28419 -31.93803 -31.30265 -29.38716 -27.71162 -27.30221 -26.49074 -24.07053 -22.38303 -21.57334 -21.09280 -20.06729 -19.95395 -17.41277 -17.39648 -15.90878 -15.81729 -15.77020 -15.37566 -14.55421 -14.41813 -14.14199 -14.04517 -13.95756 -13.84800 -13.30709 -13.03480 -12.90136 -12.73404 -12.61340 -12.31946 -12.17387 -12.13557 -12.02806 -11.54364 -11.28348 -11.13219 -11.09249 -10.65026 -10.51543 -10.15541 -9.84546 -9.78215 -9.59989 -9.48303 -9.19135 -8.54812 -7.57224 -7.38732 -7.31630 -6.86912 -4.44667 1.65642 1.88867 2.51996 2.70305 2.95888 2.96092 2.99821 3.01701 3.04158 3.33198 3.84853 4.22704 4.27172 4.46557 4.54597 4.60690 4.73533 4.80378 5.00203 5.06142 5.22122 5.26002 5.32145 5.49176 5.51756 5.55864 5.56537 5.65479 5.71561 5.83126 6.06650 6.09009 6.25394 6.29934 6.56294 6.86292 6.96242 6.96637 7.16982 7.25445 7.50842 7.73783 7.91357 7.94741 7.99469 8.18537 8.52947 8.77774 8.86071 10.06613 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.026410 B = 0.001970 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.966706 B =14211.965262 C =14628.381177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.206 3.794 3 N -0.495 5.495 4 C -0.030 4.030 5 C -0.058 4.058 6 N -0.454 5.454 7 C 0.107 3.893 8 C -0.116 4.116 9 C -0.098 4.098 10 S -0.271 6.271 11 C 0.000 4.000 12 C -0.214 4.214 13 C -0.078 4.078 14 C -0.168 4.168 15 C 0.117 3.883 16 C -0.455 4.455 17 H 0.080 0.920 18 C 0.074 3.926 19 N -0.784 5.784 20 Si 0.911 3.089 21 H -0.263 1.263 22 H -0.277 1.277 23 H -0.264 1.264 24 C -0.228 4.228 25 C -0.066 4.066 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.169 0.831 30 H 0.173 0.827 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.119 0.881 41 H 0.283 0.717 42 H 0.094 0.906 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.284 7.463 15.558 18.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.056 4.056 3 N -0.215 5.215 4 C -0.178 4.178 5 C -0.191 4.191 6 N -0.137 5.137 7 C -0.017 4.017 8 C -0.155 4.155 9 C -0.246 4.246 10 S -0.040 6.040 11 C -0.146 4.146 12 C -0.218 4.218 13 C -0.098 4.098 14 C -0.188 4.188 15 C 0.113 3.887 16 C -0.484 4.484 17 H 0.098 0.902 18 C -0.145 4.145 19 N -0.409 5.409 20 Si 0.735 3.265 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.189 1.189 24 C -0.248 4.248 25 C -0.087 4.087 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.186 0.814 30 H 0.190 0.810 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.137 0.863 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.904 8.944 14.621 17.827 hybrid contribution 0.055 -1.909 0.396 1.950 sum 4.959 7.035 15.017 17.309 Atomic orbital electron populations 1.20225 0.84994 1.04345 1.03412 1.23335 0.95769 0.81380 1.05160 1.70244 1.02323 1.28388 1.20500 1.22278 0.94790 0.92803 1.07937 1.22722 0.87102 0.96924 1.12363 1.45448 1.06536 1.07343 1.54343 1.21951 1.01997 0.79155 0.98570 1.21662 1.03452 0.95026 0.95380 1.23198 1.03622 0.98237 0.99581 1.87620 1.88231 1.18710 1.09441 1.21992 1.01731 0.91398 0.99503 1.18369 0.95386 1.11405 0.96633 1.20509 0.94485 0.98833 0.95978 1.21294 0.99900 1.04118 0.93481 1.17675 0.90253 0.88668 0.92072 1.19647 1.11241 1.16242 1.01298 0.90229 1.25974 0.95581 0.94236 0.98681 1.69822 1.20091 1.14375 1.36571 0.86325 0.79054 0.80689 0.80469 1.18720 1.20224 1.18885 1.20954 0.96412 1.09852 0.97606 1.20361 0.96169 0.97437 0.94683 0.90279 0.89090 0.90591 0.81420 0.80967 0.88809 0.88742 0.90225 0.90179 0.90464 0.90370 0.91310 0.91220 0.89338 0.86291 0.90558 0.88802 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.04 36.01 0.36 -0.20 16 2 C 0.21 2.28 7.90 -155.41 -1.23 1.05 16 3 N -0.50 -6.50 11.25 -10.81 -0.12 -6.62 16 4 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 5 C -0.06 -0.56 11.58 -16.56 -0.19 -0.75 16 6 N -0.45 -4.37 2.75 -113.90 -0.31 -4.69 16 7 C 0.11 0.77 5.68 -4.04 -0.02 0.75 16 8 C -0.12 -1.08 5.55 -26.73 -0.15 -1.23 16 9 C -0.10 -1.01 5.94 37.16 0.22 -0.79 16 10 S -0.27 -4.37 21.72 -107.50 -2.33 -6.70 16 11 C 0.00 0.00 6.06 36.01 0.22 0.22 16 12 C -0.21 -4.51 5.16 -104.33 -0.54 -5.05 16 13 C -0.08 -1.77 9.67 -39.67 -0.38 -2.16 16 14 C -0.17 -4.27 8.70 -38.87 -0.34 -4.61 16 15 C 0.12 3.04 5.58 -106.82 -0.60 2.45 16 16 C -0.45 -11.74 9.05 -37.74 -0.34 -12.08 16 17 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16 18 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 19 N -0.78 -19.83 10.95 55.55 0.61 -19.22 16 20 Si 0.91 18.09 29.59 -169.99 -5.03 13.06 16 21 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 22 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 24 C -0.23 -5.49 9.80 -38.88 -0.38 -5.87 16 25 C -0.07 -1.45 9.67 -39.66 -0.38 -1.84 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.52 7.33 -51.93 -0.38 0.14 16 29 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.09 0.54 7.94 -51.92 -0.41 0.12 16 32 H 0.09 0.54 8.13 -51.93 -0.42 0.11 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.84 7.63 -51.93 -0.40 0.44 16 35 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 38 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 39 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 40 H 0.12 3.11 6.16 -52.48 -0.32 2.78 16 41 H 0.28 6.51 8.30 -40.82 -0.34 6.18 16 42 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 43 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 375.52 15.07 5.66 5.66 Total: -1.00 -29.73 375.52 -12.14 -41.87 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.55 Total: 5.56 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: -4.05 Total: -28.92 kcal Atomic # 7 Polarization: -30.70 SS G_CDS: 0.17 Total: -30.53 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Atomic # 16 Polarization: -4.37 SS G_CDS: -2.33 Total: -6.70 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.73 -12.14 -41.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331831646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.026 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds