Wall clock time and date at job start Tue Mar 31 2020 11:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30500 * 125.65399 * 2 1 4 4 C 1.34125 * 109.25628 * 180.28789 * 3 2 1 5 5 C 1.34675 * 108.02035 * 359.72168 * 4 3 2 6 6 N 1.35043 * 125.64261 * 179.81397 * 2 1 3 7 7 C 1.46499 * 126.40580 * 359.97438 * 6 2 1 8 8 C 1.52999 * 109.46799 * 84.70838 * 7 6 2 9 9 C 1.53008 * 109.46737 * 180.02562 * 8 7 6 10 10 S 1.81398 * 109.46775 * 180.02562 * 9 8 7 11 11 C 1.81407 * 102.99840 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47051 * 180.02562 * 11 10 9 13 13 C 1.38628 * 119.74810 * 269.72418 * 12 11 10 14 14 C 1.37613 * 120.24936 * 179.72350 * 13 12 11 15 15 C 1.40717 * 119.74184 * 0.57298 * 14 13 12 16 16 C 1.41402 * 120.24497 * 179.68235 * 15 14 13 17 17 H 1.07993 * 119.99752 * 204.40782 * 16 15 14 18 18 C 1.39949 * 119.99674 * 24.40829 * 16 15 14 19 19 N 1.30822 * 120.00107 * 17.84446 * 18 16 15 20 20 Si 1.86795 * 119.99602 * 197.84743 * 18 16 15 21 21 H 1.48500 * 109.47673 * 59.99990 * 20 18 16 22 22 H 1.48500 * 109.47228 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47354 * 299.99968 * 20 18 16 24 24 C 1.40712 * 119.51145 * 359.70007 * 15 14 13 25 25 C 1.37614 * 119.74704 * 0.02562 * 24 15 14 26 26 H 1.08997 * 109.47329 * 270.18620 * 1 2 3 27 27 H 1.09003 * 109.46841 * 30.18209 * 1 2 3 28 28 H 1.08997 * 109.47036 * 150.17431 * 1 2 3 29 29 H 1.07999 * 125.98934 * 179.72463 * 4 3 2 30 30 H 1.07997 * 126.59109 * 179.97438 * 5 4 3 31 31 H 1.09007 * 109.46505 * 324.71395 * 7 6 2 32 32 H 1.08991 * 109.47152 * 204.71217 * 7 6 2 33 33 H 1.08997 * 109.47069 * 60.00857 * 8 7 6 34 34 H 1.09000 * 109.47712 * 300.00284 * 8 7 6 35 35 H 1.09000 * 109.46889 * 300.00344 * 9 8 7 36 36 H 1.08997 * 109.47004 * 60.00372 * 9 8 7 37 37 H 1.08998 * 109.46657 * 300.00059 * 11 10 9 38 38 H 1.08994 * 109.47021 * 59.99880 * 11 10 9 39 39 H 1.08003 * 119.87855 * 359.97438 * 13 12 11 40 40 H 1.08003 * 120.13227 * 180.28161 * 14 13 12 41 41 H 0.97000 * 119.99356 * 179.97438 * 19 18 16 42 42 H 1.08006 * 120.12740 * 179.97438 * 24 15 14 43 43 H 1.07998 * 119.87991 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6818 -0.0064 5 6 3.5926 -0.6645 -0.0042 6 7 2.2940 -1.0974 0.0036 7 6 1.8424 -2.4911 0.0086 8 6 1.5582 -2.9402 -1.4261 9 6 1.0860 -4.3956 -1.4207 10 16 0.7497 -4.9284 -3.1218 11 6 0.2106 -6.6477 -2.9119 12 6 -0.1110 -7.2414 -4.2592 13 6 -1.3990 -7.1467 -4.7629 14 6 -1.7027 -7.6801 -5.9946 15 6 -0.7027 -8.3342 -6.7378 16 6 -1.0046 -8.8920 -8.0016 17 1 -0.4059 -9.7020 -8.3912 18 6 -2.0793 -8.3945 -8.7473 19 7 -2.5822 -7.2199 -8.4666 20 14 -2.7957 -9.4079 -10.1435 21 1 -3.2966 -10.7004 -9.6108 22 1 -3.9174 -8.6636 -10.7704 23 1 -1.7432 -9.6655 -11.1589 24 6 0.5998 -8.4293 -6.2140 25 6 0.8821 -7.8835 -4.9827 26 1 -0.3634 0.0033 1.0276 27 1 -0.3633 0.8884 -0.5167 28 1 -0.3633 -0.8915 -0.5111 29 1 4.4099 1.3409 -0.0121 30 1 4.4775 -1.2834 -0.0084 31 1 0.9326 -2.5760 0.6029 32 1 2.6186 -3.1229 0.4401 33 1 2.4680 -2.8553 -2.0204 34 1 0.7820 -2.3084 -1.8577 35 1 1.8620 -5.0277 -0.9890 36 1 0.1761 -4.4802 -0.8266 37 1 1.0080 -7.2237 -2.4423 38 1 -0.6777 -6.6754 -2.2808 39 1 -2.1661 -6.6488 -4.1884 40 1 -2.7057 -7.6012 -6.3872 41 1 -3.3268 -6.8750 -8.9838 42 1 1.3749 -8.9295 -6.7758 43 1 1.8810 -7.9556 -4.5784 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331831646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:42 Heat of formation + Delta-G solvation = 44.634178 kcal Electronic energy + Delta-G solvation = -21855.169402 eV Core-core repulsion = 18604.823604 eV Total energy + Delta-G solvation = -3250.345798 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.02422 -39.48256 -36.72603 -35.85557 -33.07137 -33.01152 -32.60172 -31.20793 -29.34136 -28.04544 -27.23096 -25.73524 -23.22652 -22.91374 -22.30483 -21.78534 -20.66279 -19.24920 -18.14872 -17.27285 -16.94190 -16.57215 -16.54752 -16.01765 -15.67074 -15.64519 -15.20398 -15.06720 -14.72618 -14.35868 -14.06141 -13.88822 -13.83645 -13.73795 -13.50655 -13.34329 -13.25584 -13.00517 -12.96471 -12.79054 -12.73226 -12.23194 -12.17910 -11.98093 -11.51613 -11.30373 -11.04387 -10.94866 -10.80562 -10.55280 -9.39261 -9.28464 -9.19275 -8.66946 -8.58088 -6.35463 0.42143 1.06312 1.12663 1.22375 1.37626 1.49228 1.55843 1.87515 1.91136 2.17136 2.19187 2.74690 3.60781 3.66297 3.73131 3.76418 3.95790 4.06912 4.13149 4.16456 4.18717 4.40503 4.46877 4.51487 4.55897 4.58201 4.58898 4.70082 4.70447 4.82847 4.85405 5.00196 5.02744 5.12807 5.13386 5.33487 5.37792 5.42501 5.67484 5.84994 5.92200 6.07351 6.17331 6.27665 6.35254 6.66830 6.90569 6.99943 7.15747 8.29348 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.026410 B = 0.001970 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.966706 B =14211.965262 C =14628.381177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.190 3.810 3 N -0.539 5.539 4 C -0.059 4.059 5 C -0.054 4.054 6 N -0.455 5.455 7 C 0.112 3.888 8 C -0.108 4.108 9 C -0.072 4.072 10 S -0.331 6.331 11 C 0.007 3.993 12 C -0.201 4.201 13 C -0.085 4.085 14 C -0.193 4.193 15 C 0.082 3.918 16 C -0.497 4.497 17 H 0.077 0.923 18 C 0.033 3.967 19 N -0.821 5.821 20 Si 0.984 3.016 21 H -0.259 1.259 22 H -0.268 1.268 23 H -0.259 1.259 24 C -0.246 4.246 25 C -0.072 4.072 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.180 0.820 30 H 0.202 0.798 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.289 0.711 42 H 0.098 0.902 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.921 7.089 17.905 20.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 N -0.259 5.259 4 C -0.206 4.206 5 C -0.186 4.186 6 N -0.137 5.137 7 C -0.012 4.012 8 C -0.147 4.147 9 C -0.221 4.221 10 S -0.101 6.101 11 C -0.139 4.139 12 C -0.204 4.204 13 C -0.105 4.105 14 C -0.213 4.213 15 C 0.079 3.921 16 C -0.526 4.526 17 H 0.095 0.905 18 C -0.182 4.182 19 N -0.447 5.447 20 Si 0.804 3.196 21 H -0.183 1.183 22 H -0.192 1.192 23 H -0.183 1.183 24 C -0.266 4.266 25 C -0.092 4.092 26 H 0.113 0.887 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.197 0.803 30 H 0.219 0.781 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.100 0.900 42 H 0.116 0.884 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.543 8.543 16.961 19.783 hybrid contribution 0.000 -1.631 -0.075 1.632 sum 5.543 6.912 16.886 19.069 Atomic orbital electron populations 1.20318 0.83303 1.04645 1.04542 1.23848 0.96919 0.81568 1.04905 1.70196 1.03573 1.30099 1.22042 1.22674 0.94731 0.94157 1.09071 1.23201 0.88002 0.96778 1.10666 1.45608 1.06397 1.07967 1.53766 1.22070 1.03917 0.78077 0.97098 1.21540 1.02218 0.94246 0.96742 1.23213 1.05450 0.98661 0.94737 1.87790 1.88521 1.18238 1.15553 1.21894 1.03477 0.91628 0.96928 1.18803 0.94211 1.09331 0.98038 1.20764 0.96010 0.98440 0.95293 1.21275 0.99236 1.05832 0.94939 1.18018 0.91349 0.89840 0.92855 1.19871 1.13147 1.17358 1.02218 0.90464 1.26816 0.95335 0.94988 1.01071 1.69881 1.20859 1.15785 1.38176 0.85226 0.78359 0.78901 0.77087 1.18328 1.19181 1.18349 1.21169 0.95932 1.10539 0.98918 1.20691 0.97763 0.96719 0.93979 0.88658 0.89645 0.89424 0.80251 0.78085 0.86671 0.86295 0.91728 0.91600 0.88194 0.88167 0.88984 0.89382 0.87565 0.88095 0.90018 0.88424 0.86499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 10.04 71.24 0.72 -0.27 16 2 C 0.19 3.94 7.90 138.13 1.09 5.03 16 3 N -0.54 -13.94 11.25 -188.12 -2.12 -16.05 16 4 C -0.06 -1.26 11.87 83.53 0.99 -0.27 16 5 C -0.05 -0.90 11.58 83.09 0.96 0.06 16 6 N -0.45 -7.55 2.75 -514.28 -1.41 -8.96 16 7 C 0.11 1.12 5.68 86.38 0.49 1.61 16 8 C -0.11 -1.64 5.55 30.60 0.17 -1.47 16 9 C -0.07 -1.17 5.94 71.98 0.43 -0.74 16 10 S -0.33 -9.76 21.72 -56.49 -1.23 -10.99 16 11 C 0.01 0.22 6.06 71.24 0.43 0.65 16 12 C -0.20 -8.17 5.16 -19.67 -0.10 -8.27 16 13 C -0.09 -3.87 9.67 22.22 0.21 -3.66 16 14 C -0.19 -10.18 8.70 22.73 0.20 -9.98 16 15 C 0.08 4.47 5.58 -21.29 -0.12 4.35 16 16 C -0.50 -26.85 9.05 23.46 0.21 -26.64 16 17 H 0.08 4.01 7.91 -2.91 -0.02 3.98 16 18 C 0.03 1.68 5.14 85.26 0.44 2.12 16 19 N -0.82 -43.28 10.95 21.83 0.24 -43.04 16 20 Si 0.98 38.01 29.59 68.60 2.03 40.04 16 21 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 22 H -0.27 -9.77 7.11 99.48 0.71 -9.07 16 23 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 24 C -0.25 -12.07 9.80 22.73 0.22 -11.85 16 25 C -0.07 -3.07 9.67 22.22 0.21 -2.85 16 26 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 0.99 7.33 -2.39 -0.02 0.97 16 29 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 30 H 0.20 1.97 8.06 -2.91 -0.02 1.95 16 31 H 0.12 0.73 7.94 -2.38 -0.02 0.71 16 32 H 0.12 0.69 8.13 -2.39 -0.02 0.67 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.21 7.63 -2.39 -0.02 1.20 16 35 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.09 2.36 8.08 -2.39 -0.02 2.35 16 38 H 0.09 2.34 8.08 -2.39 -0.02 2.32 16 39 H 0.11 4.33 8.06 -2.91 -0.02 4.30 16 40 H 0.10 5.57 6.16 -2.91 -0.02 5.56 16 41 H 0.29 13.77 8.30 -92.71 -0.77 13.00 16 42 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 43 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -68.63 375.52 5.05 -63.58 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: 0.98 Total: 27.59 kcal Atomic # 6 Polarization: -58.73 SS G_CDS: 6.56 Total: -52.17 kcal Atomic # 7 Polarization: -64.76 SS G_CDS: -3.29 Total: -68.06 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Atomic # 16 Polarization: -9.76 SS G_CDS: -1.23 Total: -10.99 kcal Total: -68.63 5.05 -63.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331831646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.215 kcal (2) G-P(sol) polarization free energy of solvation -68.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds