Wall clock time and date at job start Tue Mar 31 2020 10:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38283 * 119.92878 * 2 1 4 4 C 1.38106 * 120.07354 * 180.02562 * 3 2 1 5 5 C 1.38869 * 119.92510 * 0.22717 * 4 3 2 6 6 N 1.39932 * 120.06903 * 179.72527 * 5 4 3 7 7 C 1.46502 * 119.99762 * 67.87910 * 6 5 4 8 8 C 1.50700 * 109.47139 * 90.00271 * 7 6 5 9 9 H 1.08000 * 119.99916 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00272 * 179.97438 * 8 7 6 11 11 N 1.31508 * 120.00547 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 119.99640 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47038 * 89.99897 * 12 10 8 14 14 H 1.48499 * 109.47028 * 209.99586 * 12 10 8 15 15 H 1.48496 * 109.47300 * 330.00105 * 12 10 8 16 16 C 1.34779 * 120.00300 * 247.87831 * 6 5 4 17 17 O 1.21291 * 119.99540 * 4.73434 * 16 6 5 18 18 C 1.50697 * 120.00017 * 184.73263 * 16 6 5 19 19 N 1.46503 * 109.46697 * 180.02562 * 18 16 6 20 20 N 1.28943 * 126.47337 * 90.02952 * 19 18 16 21 21 N 1.28570 * 109.63355 * 179.97438 * 20 19 18 22 22 C 1.33392 * 109.89271 * 359.97438 * 21 20 19 23 23 N 1.39627 * 126.26051 * 179.97438 * 22 21 20 24 24 N 1.31690 * 107.48085 * 359.75795 * 22 21 20 25 25 C 1.38868 * 119.86207 * 359.49733 * 5 4 3 26 26 C 1.38118 * 119.92974 * 0.50418 * 25 5 4 27 27 H 1.08995 * 109.46855 * 90.00313 * 1 2 3 28 28 H 1.09005 * 109.46361 * 210.00016 * 1 2 3 29 29 H 1.08998 * 109.47145 * 329.99652 * 1 2 3 30 30 H 1.08003 * 119.96460 * 359.97438 * 3 2 1 31 31 H 1.07995 * 120.03834 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.47108 * 209.99988 * 7 6 5 33 33 H 1.08994 * 109.47001 * 330.00183 * 7 6 5 34 34 H 0.96997 * 120.00336 * 180.02562 * 11 10 8 35 35 H 1.08991 * 109.47168 * 300.00166 * 18 16 6 36 36 H 1.08999 * 109.47178 * 60.00178 * 18 16 6 37 37 H 0.97005 * 119.99398 * 0.02645 * 23 22 21 38 38 H 0.96997 * 120.00395 * 180.02562 * 23 22 21 39 39 H 1.08005 * 120.03960 * 180.22621 * 25 5 4 40 40 H 1.07994 * 119.96482 * 179.74839 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 0.0001 -0.0058 6 7 5.6732 0.0002 -0.0122 7 6 6.4109 0.4759 1.1607 8 6 6.6664 -0.6782 2.0955 9 1 6.3141 -1.6670 1.8415 10 6 7.3500 -0.4718 3.2749 11 7 7.5725 -1.4788 4.0910 12 14 7.9600 1.2384 3.7138 13 1 6.9124 1.9549 4.4848 14 1 9.1917 1.1287 4.5360 15 1 8.2607 1.9911 2.4696 16 6 6.3422 -0.4374 -1.0973 17 8 5.7343 -0.7502 -2.0992 18 6 7.8455 -0.5380 -1.0658 19 7 8.3288 -1.0346 -2.3565 20 7 8.6546 -0.3203 -3.3794 21 7 9.0348 -1.0873 -4.3386 22 6 8.9654 -2.3628 -3.9544 23 7 9.2973 -3.4773 -4.7274 24 7 8.5311 -2.3785 -2.7113 25 6 3.5781 -1.2017 0.0000 26 6 2.1970 -1.1984 0.0005 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3632 -0.8901 0.5139 29 1 -0.3633 0.8899 0.5139 30 1 1.6552 2.1328 -0.0004 31 1 4.1163 2.1382 -0.0010 32 1 7.3619 0.9034 0.8429 33 1 5.8241 1.2369 1.6749 34 1 8.0531 -1.3334 4.9209 35 1 8.2715 0.4465 -0.8730 36 1 8.1471 -1.2255 -0.2755 37 1 9.6136 -3.3599 -5.6369 38 1 9.2115 -4.3688 -4.3550 39 1 4.1164 -2.1380 -0.0005 40 1 1.6553 -2.1327 0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362201600.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:19 Heat of formation + Delta-G solvation = 135.998499 kcal Electronic energy + Delta-G solvation = -25920.736458 eV Core-core repulsion = 22160.352051 eV Total energy + Delta-G solvation = -3760.384407 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.74562 -40.18571 -38.41204 -35.66171 -35.36388 -33.57048 -32.87080 -31.76172 -31.15422 -30.67742 -28.62103 -28.28469 -25.96015 -23.42674 -22.93937 -22.23714 -22.14161 -21.38062 -19.37003 -17.68109 -17.27380 -17.26548 -16.68023 -16.55962 -15.80005 -15.73524 -15.37119 -15.06342 -14.50732 -14.26298 -13.91369 -13.62806 -13.55616 -13.28025 -13.15283 -12.63774 -12.53151 -12.22097 -12.14054 -11.83806 -11.70661 -11.54971 -11.49520 -11.20033 -10.90828 -10.79046 -10.46855 -10.44608 -10.40351 -9.81681 -9.57766 -8.88070 -8.69571 -8.62690 -8.57756 -7.82171 -6.36136 -4.41265 1.30347 1.56478 1.71908 1.89084 2.75281 2.81157 3.07634 3.13187 3.16716 3.21774 3.49009 4.01821 4.12755 4.45086 4.73701 4.93109 5.04804 5.07588 5.10020 5.26929 5.30664 5.47765 5.56864 5.64659 5.68016 5.77443 5.91915 5.95189 5.97774 6.21004 6.32229 6.34580 6.42734 6.57604 6.82237 6.83631 6.97493 7.08372 7.22066 7.37425 7.41508 7.68166 8.16364 8.44250 8.64078 8.68839 9.20311 10.75730 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.008387 B = 0.005334 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3337.836088 B = 5248.364621 C = 7682.969884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.099 4.099 3 C -0.114 4.114 4 C -0.119 4.119 5 C 0.164 3.836 6 N -0.546 5.546 7 C 0.204 3.796 8 C -0.552 4.552 9 H 0.082 0.918 10 C 0.082 3.918 11 N -0.882 5.882 12 Si 0.869 3.131 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.263 1.263 16 C 0.514 3.486 17 O -0.534 6.534 18 C 0.124 3.876 19 N -0.178 5.178 20 N 0.021 4.979 21 N -0.348 5.348 22 C 0.437 3.563 23 N -0.816 5.816 24 N -0.338 5.338 25 C -0.095 4.095 26 C -0.112 4.112 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.269 0.731 35 H 0.141 0.859 36 H 0.159 0.841 37 H 0.417 0.583 38 H 0.417 0.583 39 H 0.122 0.878 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.849 1.877 -9.240 10.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.099 4.099 3 C -0.133 4.133 4 C -0.138 4.138 5 C 0.073 3.927 6 N -0.274 5.274 7 C 0.084 3.916 8 C -0.590 4.590 9 H 0.100 0.900 10 C -0.123 4.123 11 N -0.518 5.518 12 Si 0.695 3.305 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.187 1.187 16 C 0.300 3.700 17 O -0.411 6.411 18 C 0.000 4.000 19 N -0.091 5.091 20 N 0.026 4.974 21 N -0.231 5.231 22 C 0.063 3.937 23 N -0.375 5.375 24 N -0.190 5.190 25 C -0.115 4.115 26 C -0.130 4.130 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.158 0.842 36 H 0.177 0.823 37 H 0.248 0.752 38 H 0.248 0.752 39 H 0.140 0.860 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.148 2.304 -9.314 10.453 hybrid contribution 0.574 -0.050 0.441 0.725 sum -3.574 2.254 -8.873 9.828 Atomic orbital electron populations 1.20735 0.91473 1.02477 1.01905 1.19846 0.95829 0.93207 1.01037 1.20767 0.93383 0.97396 1.01722 1.21137 0.94278 0.97209 1.01225 1.17450 0.82509 0.93115 0.99580 1.45442 1.03750 1.62378 1.15853 1.20087 0.91638 0.96685 0.83158 1.21280 1.38195 0.95637 1.03894 0.89972 1.24843 0.95013 0.96800 0.95651 1.69869 1.39816 1.30932 1.11216 0.86970 0.79258 0.84756 0.79549 1.19680 1.20625 1.18716 1.20239 0.89017 0.77614 0.83110 1.90747 1.69480 1.49068 1.31823 1.22012 0.93474 1.04618 0.79945 1.52538 1.43119 1.01308 1.12170 1.78249 1.06584 1.21799 0.90768 1.75168 1.26479 0.99498 1.21910 1.21640 0.94578 0.88854 0.88580 1.40833 1.77255 1.03299 1.16066 1.78940 1.30129 0.96725 1.13174 1.21237 0.94125 0.97707 0.98391 1.20841 0.93525 0.97467 1.01186 0.91559 0.91739 0.91793 0.86096 0.85959 0.94403 0.94190 0.92069 0.84181 0.82313 0.75187 0.75192 0.85982 0.86107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 36.01 0.36 -0.78 16 2 C -0.10 -1.40 5.88 -104.59 -0.62 -2.02 16 3 C -0.11 -1.65 9.69 -39.61 -0.38 -2.03 16 4 C -0.12 -1.98 9.69 -39.40 -0.38 -2.36 16 5 C 0.16 3.14 4.75 -83.69 -0.40 2.74 16 6 N -0.55 -10.70 2.51 -114.74 -0.29 -10.99 16 7 C 0.20 4.11 3.95 -5.19 -0.02 4.09 16 8 C -0.55 -13.42 9.71 -34.44 -0.33 -13.75 16 9 H 0.08 2.26 8.06 -52.49 -0.42 1.83 16 10 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 11 N -0.88 -24.27 13.96 55.43 0.77 -23.50 16 12 Si 0.87 18.41 27.47 -169.99 -4.67 13.74 16 13 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 14 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.26 -5.08 6.54 56.52 0.37 -4.71 16 16 C 0.51 10.13 7.60 -10.99 -0.08 10.05 16 17 O -0.53 -12.03 16.19 5.55 0.09 -11.94 16 18 C 0.12 2.12 5.89 -5.19 -0.03 2.09 16 19 N -0.18 -3.25 3.83 -11.66 -0.04 -3.30 16 20 N 0.02 0.38 13.24 60.35 0.80 1.18 16 21 N -0.35 -6.11 12.32 30.03 0.37 -5.74 16 22 C 0.44 7.06 9.63 -320.87 -3.09 3.97 16 23 N -0.82 -8.68 9.13 30.04 0.27 -8.41 16 24 N -0.34 -6.19 12.79 30.03 0.38 -5.80 16 25 C -0.10 -1.77 9.56 -39.39 -0.38 -2.15 16 26 C -0.11 -1.75 9.69 -39.61 -0.38 -2.13 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 29 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 31 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.04 0.69 5.53 -51.93 -0.29 0.41 16 33 H 0.04 0.80 7.29 -51.93 -0.38 0.42 16 34 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.14 1.95 7.26 -51.93 -0.38 1.57 16 36 H 0.16 2.71 7.91 -51.93 -0.41 2.30 16 37 H 0.42 3.30 8.96 -40.82 -0.37 2.94 16 38 H 0.42 3.56 8.96 -40.82 -0.37 3.20 16 39 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 40 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 352.52 15.07 5.31 5.31 Total: -1.00 -32.56 352.52 -7.56 -40.12 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -4.73 Total: 9.65 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -5.83 Total: -0.33 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 2.27 Total: -56.55 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -4.67 Total: 13.74 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.56 -7.56 -40.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362201600.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.122 kcal (2) G-P(sol) polarization free energy of solvation -32.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds