Wall clock time and date at job start Tue Mar 31 2020 10:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38283 * 119.92878 * 2 1 4 4 C 1.38106 * 120.07354 * 180.02562 * 3 2 1 5 5 C 1.38869 * 119.92510 * 0.22717 * 4 3 2 6 6 N 1.39932 * 120.06903 * 179.72527 * 5 4 3 7 7 C 1.46502 * 119.99762 * 67.87910 * 6 5 4 8 8 C 1.50700 * 109.47139 * 90.00271 * 7 6 5 9 9 H 1.08000 * 119.99916 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00272 * 179.97438 * 8 7 6 11 11 N 1.31508 * 120.00547 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 119.99640 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47038 * 89.99897 * 12 10 8 14 14 H 1.48499 * 109.47028 * 209.99586 * 12 10 8 15 15 H 1.48496 * 109.47300 * 330.00105 * 12 10 8 16 16 C 1.34779 * 120.00300 * 247.87831 * 6 5 4 17 17 O 1.21291 * 119.99540 * 4.73434 * 16 6 5 18 18 C 1.50697 * 120.00017 * 184.73263 * 16 6 5 19 19 N 1.46503 * 109.46697 * 180.02562 * 18 16 6 20 20 N 1.28943 * 126.47337 * 90.02952 * 19 18 16 21 21 N 1.28570 * 109.63355 * 179.97438 * 20 19 18 22 22 C 1.33392 * 109.89271 * 359.97438 * 21 20 19 23 23 N 1.39627 * 126.26051 * 179.97438 * 22 21 20 24 24 N 1.31690 * 107.48085 * 359.75795 * 22 21 20 25 25 C 1.38868 * 119.86207 * 359.49733 * 5 4 3 26 26 C 1.38118 * 119.92974 * 0.50418 * 25 5 4 27 27 H 1.08995 * 109.46855 * 90.00313 * 1 2 3 28 28 H 1.09005 * 109.46361 * 210.00016 * 1 2 3 29 29 H 1.08998 * 109.47145 * 329.99652 * 1 2 3 30 30 H 1.08003 * 119.96460 * 359.97438 * 3 2 1 31 31 H 1.07995 * 120.03834 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.47108 * 209.99988 * 7 6 5 33 33 H 1.08994 * 109.47001 * 330.00183 * 7 6 5 34 34 H 0.96997 * 120.00336 * 180.02562 * 11 10 8 35 35 H 1.08991 * 109.47168 * 300.00166 * 18 16 6 36 36 H 1.08999 * 109.47178 * 60.00178 * 18 16 6 37 37 H 0.97005 * 119.99398 * 0.02645 * 23 22 21 38 38 H 0.96997 * 120.00395 * 180.02562 * 23 22 21 39 39 H 1.08005 * 120.03960 * 180.22621 * 25 5 4 40 40 H 1.07994 * 119.96482 * 179.74839 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 0.0001 -0.0058 6 7 5.6732 0.0002 -0.0122 7 6 6.4109 0.4759 1.1607 8 6 6.6664 -0.6782 2.0955 9 1 6.3141 -1.6670 1.8415 10 6 7.3500 -0.4718 3.2749 11 7 7.5725 -1.4788 4.0910 12 14 7.9600 1.2384 3.7138 13 1 6.9124 1.9549 4.4848 14 1 9.1917 1.1287 4.5360 15 1 8.2607 1.9911 2.4696 16 6 6.3422 -0.4374 -1.0973 17 8 5.7343 -0.7502 -2.0992 18 6 7.8455 -0.5380 -1.0658 19 7 8.3288 -1.0346 -2.3565 20 7 8.6546 -0.3203 -3.3794 21 7 9.0348 -1.0873 -4.3386 22 6 8.9654 -2.3628 -3.9544 23 7 9.2973 -3.4773 -4.7274 24 7 8.5311 -2.3785 -2.7113 25 6 3.5781 -1.2017 0.0000 26 6 2.1970 -1.1984 0.0005 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3632 -0.8901 0.5139 29 1 -0.3633 0.8899 0.5139 30 1 1.6552 2.1328 -0.0004 31 1 4.1163 2.1382 -0.0010 32 1 7.3619 0.9034 0.8429 33 1 5.8241 1.2369 1.6749 34 1 8.0531 -1.3334 4.9209 35 1 8.2715 0.4465 -0.8730 36 1 8.1471 -1.2255 -0.2755 37 1 9.6136 -3.3599 -5.6369 38 1 9.2115 -4.3688 -4.3550 39 1 4.1164 -2.1380 -0.0005 40 1 1.6553 -2.1327 0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362201600.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:18 Heat of formation + Delta-G solvation = 115.174811 kcal Electronic energy + Delta-G solvation = -25921.639441 eV Core-core repulsion = 22160.352051 eV Total energy + Delta-G solvation = -3761.287390 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.08143 -41.63412 -39.73206 -37.13097 -36.63471 -34.90704 -34.64778 -33.06818 -32.39642 -31.92338 -30.00598 -29.91616 -27.14757 -24.94284 -24.42554 -23.53734 -23.50318 -22.65033 -20.75732 -19.14802 -19.03722 -18.62201 -18.10611 -17.67635 -17.17729 -17.08289 -16.72937 -16.31288 -16.05237 -15.76762 -15.25650 -14.92175 -14.80819 -14.56137 -14.39548 -14.27908 -13.89737 -13.80407 -13.28320 -13.07896 -12.99630 -12.90265 -12.81449 -12.52394 -12.47247 -12.11890 -11.92880 -11.82812 -11.81448 -11.70297 -11.08192 -10.79269 -10.13716 -9.89125 -9.72865 -9.19572 -8.29924 -6.40213 -0.07222 0.28882 0.45420 0.59421 1.29706 1.43719 1.44716 1.46594 1.53420 1.93574 2.18877 2.35132 2.75179 3.03393 3.16325 3.28800 3.84441 3.91929 3.98820 4.02469 4.06132 4.36087 4.39877 4.46323 4.50158 4.62532 4.68027 4.78709 4.83302 4.89871 5.02553 5.10491 5.15208 5.34634 5.37179 5.50651 5.65161 5.66674 6.01488 6.06293 6.12220 6.33351 6.54743 6.66051 6.93034 7.25838 7.37496 8.85818 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.008387 B = 0.005334 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3337.836088 B = 5248.364621 C = 7682.969884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.094 4.094 3 C -0.110 4.110 4 C -0.127 4.127 5 C 0.125 3.875 6 N -0.544 5.544 7 C 0.209 3.791 8 C -0.546 4.546 9 H 0.031 0.969 10 C 0.025 3.975 11 N -0.939 5.939 12 Si 0.935 3.065 13 H -0.269 1.269 14 H -0.287 1.287 15 H -0.223 1.223 16 C 0.512 3.488 17 O -0.569 6.569 18 C 0.127 3.873 19 N -0.184 5.184 20 N 0.015 4.985 21 N -0.356 5.356 22 C 0.436 3.564 23 N -0.790 5.790 24 N -0.371 5.371 25 C -0.127 4.127 26 C -0.119 4.119 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.159 0.841 31 H 0.139 0.861 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.269 0.731 35 H 0.176 0.824 36 H 0.154 0.846 37 H 0.432 0.568 38 H 0.428 0.572 39 H 0.092 0.908 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.668 4.522 -10.041 11.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.095 4.095 3 C -0.128 4.128 4 C -0.146 4.146 5 C 0.035 3.965 6 N -0.271 5.271 7 C 0.089 3.911 8 C -0.584 4.584 9 H 0.049 0.951 10 C -0.175 4.175 11 N -0.577 5.577 12 Si 0.757 3.243 13 H -0.194 1.194 14 H -0.212 1.212 15 H -0.145 1.145 16 C 0.299 3.701 17 O -0.448 6.448 18 C 0.002 3.998 19 N -0.098 5.098 20 N 0.020 4.980 21 N -0.239 5.239 22 C 0.063 3.937 23 N -0.352 5.352 24 N -0.224 5.224 25 C -0.146 4.146 26 C -0.138 4.138 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.177 0.823 31 H 0.157 0.843 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.193 0.807 36 H 0.171 0.829 37 H 0.266 0.734 38 H 0.262 0.738 39 H 0.111 0.889 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.971 4.930 -10.161 12.339 hybrid contribution 0.704 -1.020 0.613 1.383 sum -4.268 3.910 -9.547 11.165 Atomic orbital electron populations 1.20816 0.88289 1.03969 1.03248 1.20343 0.98082 0.92351 0.98681 1.21250 0.92696 0.99074 0.99800 1.21411 0.95465 0.96728 1.00981 1.17824 0.82443 0.94268 1.01973 1.45427 1.04290 1.62003 1.15376 1.20019 0.93264 0.95068 0.82758 1.21380 1.37220 0.95013 1.04835 0.95070 1.25750 0.95167 1.01225 0.95328 1.70042 1.41698 1.33909 1.12080 0.85901 0.78198 0.79456 0.80700 1.19425 1.21246 1.14486 1.20666 0.90020 0.76792 0.82639 1.90710 1.70456 1.50590 1.33066 1.22099 0.91770 1.06237 0.79647 1.52564 1.43481 1.01369 1.12374 1.78183 1.06653 1.22190 0.90978 1.75130 1.26900 1.00067 1.21807 1.22024 0.93681 0.89628 0.88410 1.40925 1.75624 1.02434 1.16207 1.78891 1.31847 0.97115 1.14501 1.21246 0.95688 0.96795 1.00899 1.21121 0.92419 0.99399 1.00844 0.90099 0.90862 0.89792 0.82332 0.84287 0.91299 0.92945 0.92181 0.80701 0.82880 0.73411 0.73821 0.88929 0.84350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 10.01 71.24 0.71 -1.13 16 2 C -0.09 -2.47 5.88 -19.84 -0.12 -2.59 16 3 C -0.11 -2.87 9.69 22.25 0.22 -2.65 16 4 C -0.13 -4.02 9.69 22.39 0.22 -3.81 16 5 C 0.13 4.87 4.75 38.15 0.18 5.05 16 6 N -0.54 -21.58 2.51 -635.30 -1.59 -23.17 16 7 C 0.21 8.23 3.95 85.63 0.34 8.57 16 8 C -0.55 -27.31 9.71 25.60 0.25 -27.07 16 9 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 10 C 0.03 1.28 5.47 84.66 0.46 1.75 16 11 N -0.94 -53.64 13.96 21.45 0.30 -53.34 16 12 Si 0.94 36.85 27.47 68.60 1.88 38.74 16 13 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 14 H -0.29 -11.53 7.11 99.48 0.71 -10.83 16 15 H -0.22 -7.29 6.54 99.48 0.65 -6.64 16 16 C 0.51 20.58 7.60 87.66 0.67 21.25 16 17 O -0.57 -26.46 16.19 -3.06 -0.05 -26.51 16 18 C 0.13 4.32 5.89 85.63 0.50 4.83 16 19 N -0.18 -6.76 3.83 -190.80 -0.73 -7.49 16 20 N 0.02 0.55 13.24 37.02 0.49 1.04 16 21 N -0.36 -12.28 12.32 -58.92 -0.73 -13.01 16 22 C 0.44 13.86 9.63 260.81 2.51 16.37 16 23 N -0.79 -15.78 9.13 -58.87 -0.54 -16.32 16 24 N -0.37 -13.72 12.79 -58.90 -0.75 -14.47 16 25 C -0.13 -4.98 9.56 22.39 0.21 -4.77 16 26 C -0.12 -3.75 9.69 22.25 0.22 -3.54 16 27 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.16 8.08 -2.38 -0.02 1.14 16 29 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 30 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 31 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 32 H 0.07 2.31 5.53 -2.39 -0.01 2.30 16 33 H 0.05 1.97 7.29 -2.39 -0.02 1.95 16 34 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 35 H 0.18 4.55 7.26 -2.39 -0.02 4.54 16 36 H 0.15 5.40 7.91 -2.39 -0.02 5.38 16 37 H 0.43 6.05 8.96 -92.70 -0.83 5.22 16 38 H 0.43 6.76 8.96 -92.71 -0.83 5.93 16 39 H 0.09 4.02 8.06 -2.91 -0.02 4.00 16 40 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -74.99 352.52 4.05 -70.95 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: -0.61 Total: 31.35 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 6.37 Total: 12.25 kcal Atomic # 7 Polarization: -123.22 SS G_CDS: -3.55 Total: -126.77 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.05 Total: -26.51 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 1.88 Total: 38.74 kcal Total: -74.99 4.05 -70.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362201600.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.122 kcal (2) G-P(sol) polarization free energy of solvation -74.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds