Wall clock time and date at job start Tue Mar 31 2020 10:51:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.38283 * 119.92878 * 2 1
4 4 C 1.38106 * 120.07354 * 180.02562 * 3 2 1
5 5 C 1.38869 * 119.92510 * 0.22717 * 4 3 2
6 6 N 1.39932 * 120.06903 * 179.72527 * 5 4 3
7 7 C 1.46502 * 119.99762 * 67.87910 * 6 5 4
8 8 C 1.50700 * 109.47139 * 90.00271 * 7 6 5
9 9 H 1.08000 * 119.99916 * 359.97438 * 8 7 6
10 10 C 1.37875 * 120.00272 * 179.97438 * 8 7 6
11 11 N 1.31508 * 120.00547 * 179.97438 * 10 8 7
12 12 Si 1.86801 * 119.99640 * 359.97438 * 10 8 7
13 13 H 1.48501 * 109.47038 * 89.99897 * 12 10 8
14 14 H 1.48499 * 109.47028 * 209.99586 * 12 10 8
15 15 H 1.48496 * 109.47300 * 330.00105 * 12 10 8
16 16 C 1.34779 * 120.00300 * 247.87831 * 6 5 4
17 17 O 1.21291 * 119.99540 * 4.73434 * 16 6 5
18 18 C 1.50697 * 120.00017 * 184.73263 * 16 6 5
19 19 N 1.46503 * 109.46697 * 180.02562 * 18 16 6
20 20 N 1.28943 * 126.47337 * 90.02952 * 19 18 16
21 21 N 1.28570 * 109.63355 * 179.97438 * 20 19 18
22 22 C 1.33392 * 109.89271 * 359.97438 * 21 20 19
23 23 N 1.39627 * 126.26051 * 179.97438 * 22 21 20
24 24 N 1.31690 * 107.48085 * 359.75795 * 22 21 20
25 25 C 1.38868 * 119.86207 * 359.49733 * 5 4 3
26 26 C 1.38118 * 119.92974 * 0.50418 * 25 5 4
27 27 H 1.08995 * 109.46855 * 90.00313 * 1 2 3
28 28 H 1.09005 * 109.46361 * 210.00016 * 1 2 3
29 29 H 1.08998 * 109.47145 * 329.99652 * 1 2 3
30 30 H 1.08003 * 119.96460 * 359.97438 * 3 2 1
31 31 H 1.07995 * 120.03834 * 179.97438 * 4 3 2
32 32 H 1.09001 * 109.47108 * 209.99988 * 7 6 5
33 33 H 1.08994 * 109.47001 * 330.00183 * 7 6 5
34 34 H 0.96997 * 120.00336 * 180.02562 * 11 10 8
35 35 H 1.08991 * 109.47168 * 300.00166 * 18 16 6
36 36 H 1.08999 * 109.47178 * 60.00178 * 18 16 6
37 37 H 0.97005 * 119.99398 * 0.02645 * 23 22 21
38 38 H 0.96997 * 120.00395 * 180.02562 * 23 22 21
39 39 H 1.08005 * 120.03960 * 180.22621 * 25 5 4
40 40 H 1.07994 * 119.96482 * 179.74839 * 26 25 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1970 1.1984 0.0000
4 6 3.5780 1.2019 -0.0005
5 6 4.2739 0.0001 -0.0058
6 7 5.6732 0.0002 -0.0122
7 6 6.4109 0.4759 1.1607
8 6 6.6664 -0.6782 2.0955
9 1 6.3141 -1.6670 1.8415
10 6 7.3500 -0.4718 3.2749
11 7 7.5725 -1.4788 4.0910
12 14 7.9600 1.2384 3.7138
13 1 6.9124 1.9549 4.4848
14 1 9.1917 1.1287 4.5360
15 1 8.2607 1.9911 2.4696
16 6 6.3422 -0.4374 -1.0973
17 8 5.7343 -0.7502 -2.0992
18 6 7.8455 -0.5380 -1.0658
19 7 8.3288 -1.0346 -2.3565
20 7 8.6546 -0.3203 -3.3794
21 7 9.0348 -1.0873 -4.3386
22 6 8.9654 -2.3628 -3.9544
23 7 9.2973 -3.4773 -4.7274
24 7 8.5311 -2.3785 -2.7113
25 6 3.5781 -1.2017 0.0000
26 6 2.1970 -1.1984 0.0005
27 1 -0.3633 -0.0001 -1.0276
28 1 -0.3632 -0.8901 0.5139
29 1 -0.3633 0.8899 0.5139
30 1 1.6552 2.1328 -0.0004
31 1 4.1163 2.1382 -0.0010
32 1 7.3619 0.9034 0.8429
33 1 5.8241 1.2369 1.6749
34 1 8.0531 -1.3334 4.9209
35 1 8.2715 0.4465 -0.8730
36 1 8.1471 -1.2255 -0.2755
37 1 9.6136 -3.3599 -5.6369
38 1 9.2115 -4.3688 -4.3550
39 1 4.1164 -2.1380 -0.0005
40 1 1.6553 -2.1327 0.0009
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001362201600.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:51:18
Heat of formation + Delta-G solvation = 115.174811 kcal
Electronic energy + Delta-G solvation = -25921.639441 eV
Core-core repulsion = 22160.352051 eV
Total energy + Delta-G solvation = -3761.287390 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.139 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-44.08143 -41.63412 -39.73206 -37.13097 -36.63471 -34.90704 -34.64778 -33.06818
-32.39642 -31.92338 -30.00598 -29.91616 -27.14757 -24.94284 -24.42554 -23.53734
-23.50318 -22.65033 -20.75732 -19.14802 -19.03722 -18.62201 -18.10611 -17.67635
-17.17729 -17.08289 -16.72937 -16.31288 -16.05237 -15.76762 -15.25650 -14.92175
-14.80819 -14.56137 -14.39548 -14.27908 -13.89737 -13.80407 -13.28320 -13.07896
-12.99630 -12.90265 -12.81449 -12.52394 -12.47247 -12.11890 -11.92880 -11.82812
-11.81448 -11.70297 -11.08192 -10.79269 -10.13716 -9.89125 -9.72865 -9.19572
-8.29924 -6.40213 -0.07222 0.28882 0.45420 0.59421 1.29706 1.43719
1.44716 1.46594 1.53420 1.93574 2.18877 2.35132 2.75179 3.03393
3.16325 3.28800 3.84441 3.91929 3.98820 4.02469 4.06132 4.36087
4.39877 4.46323 4.50158 4.62532 4.68027 4.78709 4.83302 4.89871
5.02553 5.10491 5.15208 5.34634 5.37179 5.50651 5.65161 5.66674
6.01488 6.06293 6.12220 6.33351 6.54743 6.66051 6.93034 7.25838
7.37496 8.85818
Molecular weight = 316.14amu
Principal moments of inertia in cm(-1)
A = 0.008387 B = 0.005334 C = 0.003644
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3337.836088 B = 5248.364621 C = 7682.969884
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C -0.094 4.094
3 C -0.110 4.110
4 C -0.127 4.127
5 C 0.125 3.875
6 N -0.544 5.544
7 C 0.209 3.791
8 C -0.546 4.546
9 H 0.031 0.969
10 C 0.025 3.975
11 N -0.939 5.939
12 Si 0.935 3.065
13 H -0.269 1.269
14 H -0.287 1.287
15 H -0.223 1.223
16 C 0.512 3.488
17 O -0.569 6.569
18 C 0.127 3.873
19 N -0.184 5.184
20 N 0.015 4.985
21 N -0.356 5.356
22 C 0.436 3.564
23 N -0.790 5.790
24 N -0.371 5.371
25 C -0.127 4.127
26 C -0.119 4.119
27 H 0.080 0.920
28 H 0.072 0.928
29 H 0.083 0.917
30 H 0.159 0.841
31 H 0.139 0.861
32 H 0.069 0.931
33 H 0.053 0.947
34 H 0.269 0.731
35 H 0.176 0.824
36 H 0.154 0.846
37 H 0.432 0.568
38 H 0.428 0.572
39 H 0.092 0.908
40 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.668 4.522 -10.041 11.961
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C -0.095 4.095
3 C -0.128 4.128
4 C -0.146 4.146
5 C 0.035 3.965
6 N -0.271 5.271
7 C 0.089 3.911
8 C -0.584 4.584
9 H 0.049 0.951
10 C -0.175 4.175
11 N -0.577 5.577
12 Si 0.757 3.243
13 H -0.194 1.194
14 H -0.212 1.212
15 H -0.145 1.145
16 C 0.299 3.701
17 O -0.448 6.448
18 C 0.002 3.998
19 N -0.098 5.098
20 N 0.020 4.980
21 N -0.239 5.239
22 C 0.063 3.937
23 N -0.352 5.352
24 N -0.224 5.224
25 C -0.146 4.146
26 C -0.138 4.138
27 H 0.099 0.901
28 H 0.091 0.909
29 H 0.102 0.898
30 H 0.177 0.823
31 H 0.157 0.843
32 H 0.087 0.913
33 H 0.071 0.929
34 H 0.078 0.922
35 H 0.193 0.807
36 H 0.171 0.829
37 H 0.266 0.734
38 H 0.262 0.738
39 H 0.111 0.889
40 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges -4.971 4.930 -10.161 12.339
hybrid contribution 0.704 -1.020 0.613 1.383
sum -4.268 3.910 -9.547 11.165
Atomic orbital electron populations
1.20816 0.88289 1.03969 1.03248 1.20343 0.98082 0.92351 0.98681
1.21250 0.92696 0.99074 0.99800 1.21411 0.95465 0.96728 1.00981
1.17824 0.82443 0.94268 1.01973 1.45427 1.04290 1.62003 1.15376
1.20019 0.93264 0.95068 0.82758 1.21380 1.37220 0.95013 1.04835
0.95070 1.25750 0.95167 1.01225 0.95328 1.70042 1.41698 1.33909
1.12080 0.85901 0.78198 0.79456 0.80700 1.19425 1.21246 1.14486
1.20666 0.90020 0.76792 0.82639 1.90710 1.70456 1.50590 1.33066
1.22099 0.91770 1.06237 0.79647 1.52564 1.43481 1.01369 1.12374
1.78183 1.06653 1.22190 0.90978 1.75130 1.26900 1.00067 1.21807
1.22024 0.93681 0.89628 0.88410 1.40925 1.75624 1.02434 1.16207
1.78891 1.31847 0.97115 1.14501 1.21246 0.95688 0.96795 1.00899
1.21121 0.92419 0.99399 1.00844 0.90099 0.90862 0.89792 0.82332
0.84287 0.91299 0.92945 0.92181 0.80701 0.82880 0.73411 0.73821
0.88929 0.84350
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.85 10.01 71.24 0.71 -1.13 16
2 C -0.09 -2.47 5.88 -19.84 -0.12 -2.59 16
3 C -0.11 -2.87 9.69 22.25 0.22 -2.65 16
4 C -0.13 -4.02 9.69 22.39 0.22 -3.81 16
5 C 0.13 4.87 4.75 38.15 0.18 5.05 16
6 N -0.54 -21.58 2.51 -635.30 -1.59 -23.17 16
7 C 0.21 8.23 3.95 85.63 0.34 8.57 16
8 C -0.55 -27.31 9.71 25.60 0.25 -27.07 16
9 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16
10 C 0.03 1.28 5.47 84.66 0.46 1.75 16
11 N -0.94 -53.64 13.96 21.45 0.30 -53.34 16
12 Si 0.94 36.85 27.47 68.60 1.88 38.74 16
13 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16
14 H -0.29 -11.53 7.11 99.48 0.71 -10.83 16
15 H -0.22 -7.29 6.54 99.48 0.65 -6.64 16
16 C 0.51 20.58 7.60 87.66 0.67 21.25 16
17 O -0.57 -26.46 16.19 -3.06 -0.05 -26.51 16
18 C 0.13 4.32 5.89 85.63 0.50 4.83 16
19 N -0.18 -6.76 3.83 -190.80 -0.73 -7.49 16
20 N 0.02 0.55 13.24 37.02 0.49 1.04 16
21 N -0.36 -12.28 12.32 -58.92 -0.73 -13.01 16
22 C 0.44 13.86 9.63 260.81 2.51 16.37 16
23 N -0.79 -15.78 9.13 -58.87 -0.54 -16.32 16
24 N -0.37 -13.72 12.79 -58.90 -0.75 -14.47 16
25 C -0.13 -4.98 9.56 22.39 0.21 -4.77 16
26 C -0.12 -3.75 9.69 22.25 0.22 -3.54 16
27 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16
28 H 0.07 1.16 8.08 -2.38 -0.02 1.14 16
29 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16
30 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16
31 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16
32 H 0.07 2.31 5.53 -2.39 -0.01 2.30 16
33 H 0.05 1.97 7.29 -2.39 -0.02 1.95 16
34 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16
35 H 0.18 4.55 7.26 -2.39 -0.02 4.54 16
36 H 0.15 5.40 7.91 -2.39 -0.02 5.38 16
37 H 0.43 6.05 8.96 -92.70 -0.83 5.22 16
38 H 0.43 6.76 8.96 -92.71 -0.83 5.93 16
39 H 0.09 4.02 8.06 -2.91 -0.02 4.00 16
40 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16
Total: -1.00 -74.99 352.52 4.05 -70.95
By element:
Atomic # 1 Polarization: 31.96 SS G_CDS: -0.61 Total: 31.35 kcal
Atomic # 6 Polarization: 5.88 SS G_CDS: 6.37 Total: 12.25 kcal
Atomic # 7 Polarization: -123.22 SS G_CDS: -3.55 Total: -126.77 kcal
Atomic # 8 Polarization: -26.46 SS G_CDS: -0.05 Total: -26.51 kcal
Atomic # 14 Polarization: 36.85 SS G_CDS: 1.88 Total: 38.74 kcal
Total: -74.99 4.05 -70.95 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001362201600.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 186.122 kcal
(2) G-P(sol) polarization free energy of solvation -74.995 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.128 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.948 kcal
(6) G-S(sol) free energy of system = (1) + (5) 115.175 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds