Wall clock time and date at job start Tue Mar 31 2020 11:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54790 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55161 * 3 2 1 6 6 H 1.07999 * 119.99715 * 245.60397 * 5 3 2 7 7 C 1.37879 * 120.00117 * 65.60375 * 5 3 2 8 8 N 1.31512 * 119.99978 * 196.28070 * 7 5 3 9 9 Si 1.86805 * 119.99966 * 16.28830 * 7 5 3 10 10 H 1.48497 * 109.46898 * 179.97438 * 9 7 5 11 11 H 1.48506 * 109.46960 * 299.99810 * 9 7 5 12 12 H 1.48499 * 109.47283 * 59.99520 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55383 * 3 2 1 14 14 C 1.34781 * 119.99694 * 275.00048 * 13 3 2 15 15 O 1.21551 * 120.00255 * 359.97438 * 14 13 3 16 16 C 1.47862 * 119.99847 * 179.97438 * 14 13 3 17 17 C 1.39618 * 120.10809 * 359.72017 * 16 14 13 18 18 C 1.37982 * 119.99681 * 179.76322 * 17 16 14 19 19 C 1.38244 * 120.23165 * 0.51771 * 18 17 16 20 20 C 1.38977 * 120.21746 * 359.73714 * 19 18 17 21 21 N 1.39846 * 120.00540 * 180.02562 * 20 19 18 22 22 N 1.40508 * 127.48018 * 225.00561 * 21 20 19 23 23 H 0.97002 * 125.99619 * 359.95783 * 22 21 20 24 24 N 1.28619 * 108.00504 * 179.97438 * 22 21 20 25 25 N 1.28384 * 111.46983 * 0.02562 * 24 22 21 26 26 C 1.36478 * 109.66688 * 359.74704 * 25 24 22 27 27 N 1.30570 * 127.09294 * 180.26011 * 26 25 24 28 28 C 1.38668 * 119.99283 * 0.02562 * 20 19 18 29 29 H 1.08999 * 109.47111 * 300.00221 * 1 2 3 30 30 H 1.09006 * 109.47148 * 60.00076 * 1 2 3 31 31 H 1.08996 * 109.47553 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47111 * 239.99779 * 2 1 3 33 33 H 1.09000 * 109.47249 * 120.00370 * 2 1 3 34 34 H 0.96993 * 120.00160 * 354.84026 * 8 7 5 35 35 H 0.96993 * 120.00114 * 95.00036 * 13 3 2 36 36 H 1.08003 * 120.00257 * 0.02562 * 17 16 14 37 37 H 1.08007 * 119.88769 * 180.23025 * 18 17 16 38 38 H 1.07991 * 119.89585 * 179.71758 * 19 18 17 39 39 H 0.97002 * 120.00335 * 0.15553 * 27 26 25 40 40 H 1.08006 * 120.10851 * 179.97438 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5407 1.4446 -0.1375 6 1 4.1567 1.8041 0.6736 7 6 4.1273 0.9878 -1.2986 8 7 5.4073 0.6860 -1.3140 9 14 3.1041 0.7977 -2.8498 10 1 3.9637 0.2944 -3.9512 11 1 2.0024 -0.1666 -2.6010 12 1 2.5328 2.1144 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4476 2.6600 1.3854 15 8 -0.3370 2.6312 0.4575 16 6 0.0678 3.3165 2.6546 17 6 0.9650 3.3457 3.7239 18 6 0.6100 3.9633 4.9057 19 6 -0.6368 4.5452 5.0398 20 6 -1.5392 4.5169 3.9832 21 7 -2.7991 5.1074 4.1234 22 7 -4.0407 4.5746 3.7378 23 1 -4.1853 3.7130 3.3164 24 7 -4.9519 5.4301 4.0412 25 7 -4.4497 6.4775 4.5880 26 6 -3.0945 6.3436 4.6783 27 7 -2.2500 7.2032 5.1811 28 6 -1.1901 3.9030 2.7897 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 5.9549 0.8550 -0.5315 35 1 2.2901 2.1167 1.9977 36 1 1.9386 2.8887 3.6247 37 1 1.3069 3.9881 5.7305 38 1 -0.9107 5.0231 5.9686 39 1 -2.5715 8.0430 5.5448 40 1 -1.8901 3.8795 1.9675 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362306857.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:49 Heat of formation + Delta-G solvation = 150.036522 kcal Electronic energy + Delta-G solvation = -25657.628973 eV Core-core repulsion = 21897.853300 eV Total energy + Delta-G solvation = -3759.775673 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.23890 -40.20610 -38.60632 -35.64578 -35.38371 -34.96544 -32.65803 -31.96628 -31.50590 -31.01294 -29.71046 -27.34393 -25.15310 -24.41168 -23.17235 -22.34970 -22.20966 -20.77804 -19.92830 -19.51203 -18.43060 -17.47356 -17.08772 -16.71628 -16.30233 -16.11505 -15.62689 -15.06201 -14.77111 -14.29239 -13.93825 -13.69541 -13.42813 -13.23673 -12.70535 -12.59279 -12.47492 -12.44062 -12.31571 -12.11375 -11.92833 -11.72210 -11.45367 -11.00592 -10.79208 -10.52096 -10.05606 -9.97386 -9.72606 -9.45270 -9.40899 -9.25654 -9.13076 -8.42154 -8.24821 -8.14065 -6.65555 -4.30420 0.22076 0.49781 0.70257 0.97307 2.46914 2.83695 3.10179 3.32043 3.39379 3.52584 3.68444 3.79223 4.10518 4.34891 4.38230 4.41283 4.58238 4.74394 4.86648 4.94194 5.09247 5.20176 5.41465 5.56400 5.87161 5.96724 5.99503 5.99819 6.04052 6.08014 6.17244 6.32694 6.58620 6.69240 6.78912 6.83036 6.93039 7.23118 7.27433 7.48485 7.53237 7.97786 8.14924 8.29722 8.58044 8.79599 9.38990 10.75410 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.024049 B = 0.003016 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.024556 B = 9281.093141 C = 9840.675350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.247 3.753 4 H 0.044 0.956 5 C -0.619 4.619 6 H 0.062 0.938 7 C 0.040 3.960 8 N -0.896 5.896 9 Si 1.039 2.961 10 H -0.283 1.283 11 H -0.269 1.269 12 H -0.280 1.280 13 N -0.690 5.690 14 C 0.542 3.458 15 O -0.545 6.545 16 C -0.101 4.101 17 C -0.083 4.083 18 C -0.103 4.103 19 C -0.077 4.077 20 C 0.153 3.847 21 N -0.394 5.394 22 N -0.312 5.312 23 H 0.478 0.522 24 N 0.117 4.883 25 N -0.336 5.336 26 C 0.505 3.495 27 N -0.713 5.713 28 C -0.077 4.077 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.269 0.731 35 H 0.393 0.607 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.364 0.636 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.159 4.657 13.480 20.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.144 3.856 4 H 0.061 0.939 5 C -0.657 4.657 6 H 0.080 0.920 7 C -0.167 4.167 8 N -0.529 5.529 9 Si 0.867 3.133 10 H -0.208 1.208 11 H -0.195 1.195 12 H -0.206 1.206 13 N -0.337 5.337 14 C 0.328 3.672 15 O -0.425 6.425 16 C -0.105 4.105 17 C -0.102 4.102 18 C -0.122 4.122 19 C -0.099 4.099 20 C 0.061 3.939 21 N -0.205 5.205 22 N -0.163 5.163 23 H 0.335 0.665 24 N 0.121 4.879 25 N -0.235 5.235 26 C 0.134 3.866 27 N -0.360 5.360 28 C -0.099 4.099 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.227 0.773 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.184 0.816 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.671 4.408 11.343 19.841 hybrid contribution 0.333 0.277 1.823 1.874 sum -15.338 4.685 13.166 20.749 Atomic orbital electron populations 1.21889 0.97434 0.98952 1.01855 1.22369 0.93773 0.99653 1.02048 1.19120 0.96006 0.88599 0.81895 0.93877 1.22073 0.89526 1.49818 1.04278 0.91980 1.25675 0.97533 0.92299 1.01164 1.70875 1.07050 1.40643 1.34330 0.84124 0.75516 0.77739 0.75919 1.20848 1.19474 1.20585 1.46223 1.14097 1.55099 1.18323 1.18088 0.83125 0.79354 0.86660 1.90741 1.51057 1.60181 1.40491 1.20074 0.94272 1.00736 0.95453 1.21577 0.99342 0.96985 0.92325 1.21005 0.95648 0.97407 0.98127 1.21148 0.93547 0.97802 0.97410 1.17024 0.81096 1.01053 0.94739 1.45274 0.97983 1.16146 1.61140 1.48191 0.93890 1.19920 1.54253 0.66515 1.77623 1.14626 0.94845 1.00826 1.77238 1.07126 1.14751 1.24387 1.21356 0.86539 0.85727 0.93009 1.69537 1.32412 1.09164 1.24896 1.21070 0.96796 0.97097 0.94927 0.93421 0.92985 0.94980 0.91103 0.92967 0.92035 0.77250 0.84475 0.84149 0.84403 0.81552 0.84292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.53 37.15 0.32 -2.41 16 2 C -0.14 -2.95 5.27 -26.73 -0.14 -3.09 16 3 C 0.25 5.58 1.82 -69.08 -0.13 5.45 16 4 H 0.04 1.07 6.25 -51.93 -0.32 0.75 16 5 C -0.62 -16.01 9.01 -34.44 -0.31 -16.32 16 6 H 0.06 1.67 7.96 -52.49 -0.42 1.25 16 7 C 0.04 1.09 5.32 -17.82 -0.09 1.00 16 8 N -0.90 -25.95 13.70 55.43 0.76 -25.19 16 9 Si 1.04 24.29 26.27 -169.99 -4.47 19.83 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -5.82 5.67 56.52 0.32 -5.50 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.69 -12.92 4.98 -55.87 -0.28 -13.19 16 14 C 0.54 9.58 6.37 -12.32 -0.08 9.51 16 15 O -0.54 -11.11 13.48 5.32 0.07 -11.03 16 16 C -0.10 -1.38 5.87 -104.99 -0.62 -2.00 16 17 C -0.08 -0.91 9.54 -39.16 -0.37 -1.29 16 18 C -0.10 -0.96 10.02 -39.67 -0.40 -1.35 16 19 C -0.08 -0.79 9.34 -39.31 -0.37 -1.15 16 20 C 0.15 1.70 6.33 -83.77 -0.53 1.17 16 21 N -0.39 -4.23 3.81 -11.12 -0.04 -4.27 16 22 N -0.31 -2.47 8.21 60.35 0.50 -1.97 16 23 H 0.48 2.03 8.96 -331.82 -2.97 -0.95 16 24 N 0.12 1.10 13.30 60.35 0.80 1.90 16 25 N -0.34 -3.87 12.46 30.22 0.38 -3.49 16 26 C 0.50 6.10 9.04 -319.48 -2.89 3.21 16 27 N -0.71 -8.73 13.48 30.23 0.41 -8.32 16 28 C -0.08 -0.95 9.46 -38.97 -0.37 -1.32 16 29 H 0.05 0.88 5.63 -51.93 -0.29 0.59 16 30 H 0.05 1.03 7.88 -51.93 -0.41 0.62 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 1.58 4.74 -51.93 -0.25 1.33 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.27 7.71 8.73 -40.82 -0.36 7.35 16 35 H 0.39 6.44 6.55 -40.82 -0.27 6.17 16 36 H 0.14 1.35 6.40 -52.48 -0.34 1.01 16 37 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.14 1.34 7.78 -52.49 -0.41 0.93 16 39 H 0.36 3.87 8.92 -40.82 -0.36 3.50 16 40 H 0.14 1.71 7.65 -52.48 -0.40 1.31 16 LS Contribution 337.28 15.07 5.08 5.08 Total: -1.00 -32.19 337.28 -9.71 -41.90 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.94 Total: 7.35 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -5.98 Total: -8.58 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 2.52 Total: -54.54 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.07 Total: -11.03 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -4.47 Total: 19.83 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.19 -9.71 -41.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362306857.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.932 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds