Wall clock time and date at job start Tue Mar 31 2020 11:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54790 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55161 * 3 2 1 6 6 H 1.07999 * 119.99715 * 245.60397 * 5 3 2 7 7 C 1.37879 * 120.00117 * 65.60375 * 5 3 2 8 8 N 1.31512 * 119.99978 * 196.28070 * 7 5 3 9 9 Si 1.86805 * 119.99966 * 16.28830 * 7 5 3 10 10 H 1.48497 * 109.46898 * 179.97438 * 9 7 5 11 11 H 1.48506 * 109.46960 * 299.99810 * 9 7 5 12 12 H 1.48499 * 109.47283 * 59.99520 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55383 * 3 2 1 14 14 C 1.34781 * 119.99694 * 275.00048 * 13 3 2 15 15 O 1.21551 * 120.00255 * 359.97438 * 14 13 3 16 16 C 1.47862 * 119.99847 * 179.97438 * 14 13 3 17 17 C 1.39618 * 120.10809 * 359.72017 * 16 14 13 18 18 C 1.37982 * 119.99681 * 179.76322 * 17 16 14 19 19 C 1.38244 * 120.23165 * 0.51771 * 18 17 16 20 20 C 1.38977 * 120.21746 * 359.73714 * 19 18 17 21 21 N 1.39846 * 120.00540 * 180.02562 * 20 19 18 22 22 N 1.40508 * 127.48018 * 225.00561 * 21 20 19 23 23 H 0.97002 * 125.99619 * 359.95783 * 22 21 20 24 24 N 1.28619 * 108.00504 * 179.97438 * 22 21 20 25 25 N 1.28384 * 111.46983 * 0.02562 * 24 22 21 26 26 C 1.36478 * 109.66688 * 359.74704 * 25 24 22 27 27 N 1.30570 * 127.09294 * 180.26011 * 26 25 24 28 28 C 1.38668 * 119.99283 * 0.02562 * 20 19 18 29 29 H 1.08999 * 109.47111 * 300.00221 * 1 2 3 30 30 H 1.09006 * 109.47148 * 60.00076 * 1 2 3 31 31 H 1.08996 * 109.47553 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47111 * 239.99779 * 2 1 3 33 33 H 1.09000 * 109.47249 * 120.00370 * 2 1 3 34 34 H 0.96993 * 120.00160 * 354.84026 * 8 7 5 35 35 H 0.96993 * 120.00114 * 95.00036 * 13 3 2 36 36 H 1.08003 * 120.00257 * 0.02562 * 17 16 14 37 37 H 1.08007 * 119.88769 * 180.23025 * 18 17 16 38 38 H 1.07991 * 119.89585 * 179.71758 * 19 18 17 39 39 H 0.97002 * 120.00335 * 0.15553 * 27 26 25 40 40 H 1.08006 * 120.10851 * 179.97438 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5407 1.4446 -0.1375 6 1 4.1567 1.8041 0.6736 7 6 4.1273 0.9878 -1.2986 8 7 5.4073 0.6860 -1.3140 9 14 3.1041 0.7977 -2.8498 10 1 3.9637 0.2944 -3.9512 11 1 2.0024 -0.1666 -2.6010 12 1 2.5328 2.1144 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4476 2.6600 1.3854 15 8 -0.3370 2.6312 0.4575 16 6 0.0678 3.3165 2.6546 17 6 0.9650 3.3457 3.7239 18 6 0.6100 3.9633 4.9057 19 6 -0.6368 4.5452 5.0398 20 6 -1.5392 4.5169 3.9832 21 7 -2.7991 5.1074 4.1234 22 7 -4.0407 4.5746 3.7378 23 1 -4.1853 3.7130 3.3164 24 7 -4.9519 5.4301 4.0412 25 7 -4.4497 6.4775 4.5880 26 6 -3.0945 6.3436 4.6783 27 7 -2.2500 7.2032 5.1811 28 6 -1.1901 3.9030 2.7897 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 5.9549 0.8550 -0.5315 35 1 2.2901 2.1167 1.9977 36 1 1.9386 2.8887 3.6247 37 1 1.3069 3.9881 5.7305 38 1 -0.9107 5.0231 5.9686 39 1 -2.5715 8.0430 5.5448 40 1 -1.8901 3.8795 1.9675 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362306857.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:48 Heat of formation + Delta-G solvation = 128.706279 kcal Electronic energy + Delta-G solvation = -25658.553922 eV Core-core repulsion = 21897.853300 eV Total energy + Delta-G solvation = -3760.700622 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.04641 -41.38645 -39.78703 -37.10456 -36.46658 -35.80679 -34.50332 -33.44941 -32.37056 -32.11356 -30.64545 -29.09912 -25.99632 -25.49358 -24.39743 -23.84850 -23.10058 -22.06941 -21.35327 -20.67203 -19.81630 -18.91983 -17.93022 -17.66406 -17.43909 -17.14481 -16.99620 -16.40558 -15.92073 -15.62598 -15.12403 -14.88973 -14.63293 -14.50915 -14.37077 -14.24228 -13.87714 -13.61742 -13.23797 -13.21124 -13.01651 -12.70622 -12.68079 -12.49125 -12.32224 -12.29243 -11.79326 -11.41086 -11.13176 -10.95590 -10.86078 -10.48343 -10.26145 -10.20806 -9.83059 -8.99820 -8.79326 -6.44576 -0.59464 -0.28688 -0.23386 0.13127 1.44939 1.50412 1.59085 1.68533 1.79415 2.21898 2.40891 2.44693 2.69349 3.01561 3.27749 3.50476 3.59434 3.62955 3.83438 3.97918 3.99495 4.31309 4.32229 4.40643 4.49144 4.57653 4.71447 4.85357 5.03274 5.10558 5.14343 5.19300 5.21158 5.27364 5.30199 5.53361 5.54615 5.62685 5.68017 6.01212 6.02655 6.52482 6.67624 6.76886 7.15611 7.25670 7.36101 8.60637 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.024049 B = 0.003016 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.024556 B = 9281.093141 C = 9840.675350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.137 4.137 3 C 0.252 3.748 4 H 0.023 0.977 5 C -0.613 4.613 6 H 0.043 0.957 7 C -0.004 4.004 8 N -0.929 5.929 9 Si 1.068 2.932 10 H -0.285 1.285 11 H -0.241 1.241 12 H -0.276 1.276 13 N -0.693 5.693 14 C 0.544 3.456 15 O -0.575 6.575 16 C -0.120 4.120 17 C -0.079 4.079 18 C -0.089 4.089 19 C -0.070 4.070 20 C 0.150 3.850 21 N -0.397 5.397 22 N -0.287 5.287 23 H 0.493 0.507 24 N 0.126 4.874 25 N -0.359 5.359 26 C 0.498 3.502 27 N -0.729 5.729 28 C -0.077 4.077 29 H 0.049 0.951 30 H 0.039 0.961 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.259 0.741 35 H 0.404 0.596 36 H 0.149 0.851 37 H 0.176 0.824 38 H 0.147 0.853 39 H 0.369 0.631 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.641 4.410 14.870 22.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.175 4.175 3 C 0.147 3.853 4 H 0.041 0.959 5 C -0.651 4.651 6 H 0.061 0.939 7 C -0.205 4.205 8 N -0.564 5.564 9 Si 0.891 3.109 10 H -0.210 1.210 11 H -0.166 1.166 12 H -0.202 1.202 13 N -0.342 5.342 14 C 0.332 3.668 15 O -0.457 6.457 16 C -0.124 4.124 17 C -0.098 4.098 18 C -0.107 4.107 19 C -0.092 4.092 20 C 0.058 3.942 21 N -0.208 5.208 22 N -0.142 5.142 23 H 0.354 0.646 24 N 0.130 4.870 25 N -0.258 5.258 26 C 0.127 3.873 27 N -0.378 5.378 28 C -0.099 4.099 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.240 0.760 36 H 0.166 0.834 37 H 0.193 0.807 38 H 0.165 0.835 39 H 0.189 0.811 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.176 4.151 12.767 21.800 hybrid contribution 0.765 0.394 1.491 1.721 sum -16.411 4.545 14.258 22.210 Atomic orbital electron populations 1.21769 0.95477 1.00436 1.01419 1.22255 0.95438 0.98128 1.01728 1.18797 0.93551 0.89813 0.83138 0.95923 1.22282 0.91435 1.48082 1.03279 0.93914 1.26753 0.97681 0.92168 1.03894 1.70975 1.08068 1.43259 1.34085 0.83758 0.75282 0.78594 0.73242 1.21041 1.16581 1.20180 1.46013 1.15148 1.55575 1.17425 1.18579 0.82056 0.78441 0.87726 1.90716 1.51754 1.61218 1.42040 1.19724 0.95654 1.02628 0.94388 1.21737 0.99253 0.96708 0.92112 1.21333 0.95637 0.95579 0.98199 1.21388 0.93536 0.96940 0.97341 1.17041 0.81561 1.00972 0.94639 1.45330 0.98570 1.16065 1.60877 1.48307 0.92857 1.20099 1.52896 0.64611 1.77580 1.14576 0.94624 1.00242 1.77260 1.06894 1.15601 1.26046 1.21516 0.86837 0.85970 0.93013 1.69508 1.32808 1.09683 1.25786 1.20972 0.96334 0.97294 0.95286 0.93172 0.94138 0.92457 0.92268 0.92438 0.93177 0.76008 0.83383 0.80705 0.83522 0.81058 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 8.53 71.98 0.61 -4.18 16 2 C -0.14 -5.59 5.27 30.59 0.16 -5.43 16 3 C 0.25 11.26 1.82 44.25 0.08 11.34 16 4 H 0.02 1.13 6.25 -2.39 -0.01 1.11 16 5 C -0.61 -31.96 9.01 25.60 0.23 -31.73 16 6 H 0.04 2.34 7.96 -2.91 -0.02 2.32 16 7 C 0.00 -0.22 5.32 84.66 0.45 0.23 16 8 N -0.93 -54.82 13.70 21.45 0.29 -54.53 16 9 Si 1.07 48.88 26.27 68.60 1.80 50.68 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.24 -9.92 5.67 99.48 0.56 -9.36 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 13 N -0.69 -25.43 4.98 -448.95 -2.23 -27.67 16 14 C 0.54 18.74 6.37 86.79 0.55 19.29 16 15 O -0.58 -23.16 13.48 -3.88 -0.05 -23.21 16 16 C -0.12 -3.08 5.87 -20.10 -0.12 -3.20 16 17 C -0.08 -1.53 9.54 22.54 0.21 -1.32 16 18 C -0.09 -1.33 10.02 22.21 0.22 -1.11 16 19 C -0.07 -1.22 9.34 22.45 0.21 -1.01 16 20 C 0.15 3.01 6.33 38.14 0.24 3.26 16 21 N -0.40 -7.77 3.81 -189.10 -0.72 -8.49 16 22 N -0.29 -3.99 8.21 37.02 0.30 -3.68 16 23 H 0.49 3.12 8.96 -340.26 -3.05 0.07 16 24 N 0.13 2.16 13.30 37.02 0.49 2.66 16 25 N -0.36 -7.83 12.46 -58.31 -0.73 -8.56 16 26 C 0.50 11.30 9.04 260.32 2.35 13.65 16 27 N -0.73 -16.92 13.48 -58.26 -0.79 -17.70 16 28 C -0.08 -1.77 9.46 22.66 0.21 -1.56 16 29 H 0.05 1.76 5.63 -2.39 -0.01 1.75 16 30 H 0.04 1.53 7.88 -2.38 -0.02 1.51 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 2.54 4.74 -2.39 -0.01 2.53 16 33 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.26 15.26 8.73 -92.71 -0.81 14.45 16 35 H 0.40 12.86 6.55 -92.71 -0.61 12.25 16 36 H 0.15 2.52 6.40 -2.91 -0.02 2.50 16 37 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 38 H 0.15 2.38 7.78 -2.92 -0.02 2.35 16 39 H 0.37 7.53 8.92 -92.71 -0.83 6.70 16 40 H 0.13 3.17 7.65 -2.91 -0.02 3.14 16 Total: -1.00 -69.77 337.28 0.28 -69.50 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: -3.52 Total: 22.76 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 5.43 Total: -1.76 kcal Atomic # 7 Polarization: -114.59 SS G_CDS: -3.38 Total: -117.97 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.05 Total: -23.21 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 1.80 Total: 50.68 kcal Total: -69.77 0.28 -69.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362306857.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.202 kcal (2) G-P(sol) polarization free energy of solvation -69.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds