Wall clock time and date at job start Tue Mar 31 2020 11:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47052 * 2 1 4 4 N 1.30833 * 125.95843 * 305.01932 * 3 2 1 5 5 C 1.33237 * 109.82724 * 179.97438 * 4 3 2 6 6 C 1.50705 * 125.52379 * 179.97438 * 5 4 3 7 7 N 1.46504 * 109.46842 * 90.00482 * 6 5 4 8 8 S 1.65600 * 119.99852 * 164.72404 * 7 6 5 9 9 O 1.42102 * 104.27497 * 181.34417 * 8 7 6 10 10 O 1.42097 * 104.27553 * 309.19941 * 8 7 6 11 11 C 1.81398 * 104.45017 * 65.27294 * 8 7 6 12 12 C 1.52998 * 109.47181 * 179.97438 * 11 8 7 13 13 C 1.53001 * 109.47423 * 300.00514 * 12 11 8 14 14 C 1.53006 * 109.46713 * 60.00324 * 12 11 8 15 15 C 1.50698 * 109.46999 * 179.97438 * 12 11 8 16 16 H 1.07999 * 120.00430 * 357.69784 * 15 12 11 17 17 C 1.37881 * 119.99762 * 177.69736 * 15 12 11 18 18 N 1.31515 * 119.99917 * 6.58445 * 17 15 12 19 19 Si 1.86804 * 119.99978 * 186.58264 * 17 15 12 20 20 H 1.48500 * 109.46950 * 84.99479 * 19 17 15 21 21 H 1.48497 * 109.46997 * 204.99597 * 19 17 15 22 22 H 1.48506 * 109.46924 * 324.99500 * 19 17 15 23 23 N 1.30711 * 108.94587 * 0.26561 * 5 4 3 24 24 N 1.34431 * 125.96365 * 124.99867 * 3 2 1 25 25 H 0.96995 * 126.81794 * 0.02562 * 24 3 2 26 26 H 1.08993 * 109.47618 * 300.00215 * 1 2 3 27 27 H 1.09000 * 109.46775 * 60.00830 * 1 2 3 28 28 H 1.09002 * 109.47200 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47766 * 239.99369 * 2 1 3 30 30 H 1.09005 * 109.46935 * 119.99607 * 2 1 3 31 31 H 1.08990 * 109.47361 * 330.00393 * 6 5 4 32 32 H 1.08994 * 109.46845 * 210.00102 * 6 5 4 33 33 H 0.97001 * 120.00057 * 344.99447 * 7 6 5 34 34 H 1.08996 * 109.47345 * 300.00221 * 11 8 7 35 35 H 1.09004 * 109.46784 * 59.99833 * 11 8 7 36 36 H 1.08999 * 109.47291 * 66.66390 * 13 12 11 37 37 H 1.08995 * 109.46991 * 186.66775 * 13 12 11 38 38 H 1.09005 * 109.46773 * 306.66684 * 13 12 11 39 39 H 1.08996 * 109.46979 * 59.99898 * 14 12 11 40 40 H 1.08999 * 109.46820 * 180.02562 * 14 12 11 41 41 H 1.08998 * 109.46770 * 299.99803 * 14 12 11 42 42 H 0.97006 * 119.99873 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 1.7154 2.3477 -0.8673 5 6 2.3419 3.4838 -0.5638 6 6 2.2303 4.7769 -1.3297 7 7 1.1271 5.5729 -0.7859 8 16 1.0015 7.1804 -1.1631 9 8 -0.1439 7.6201 -0.4460 10 8 2.2901 7.7084 -0.8803 11 6 0.6821 7.2029 -2.9486 12 6 0.5442 8.6507 -3.4238 13 6 -0.6190 9.3201 -2.6891 14 6 1.8391 9.4101 -3.1277 15 6 0.2795 8.6693 -4.9072 16 1 0.2529 7.7435 -5.4628 17 6 0.0712 9.8684 -5.5553 18 7 0.2309 11.0021 -4.9081 19 14 -0.4377 9.8826 -7.3526 20 1 -1.9123 9.7364 -7.4507 21 1 -0.0252 11.1668 -7.9737 22 1 0.2197 8.7558 -8.0622 23 7 3.0738 3.2931 0.5023 24 7 2.8838 1.9572 0.8913 25 1 3.2894 1.5092 1.6501 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.0391 4.5613 -2.3808 32 1 3.1616 5.3356 -1.2369 33 1 0.4724 5.1591 -0.2018 34 1 1.5106 6.7257 -3.4719 35 1 -0.2405 6.6622 -3.1594 36 1 -0.3750 9.4131 -1.6309 37 1 -0.7931 10.3102 -3.1103 38 1 -1.5176 8.7137 -2.8028 39 1 2.6677 8.9332 -3.6511 40 1 1.7406 10.4416 -3.4659 41 1 2.0309 9.3966 -2.0549 42 1 0.0840 11.8456 -5.3639 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363921605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:08 Heat of formation + Delta-G solvation = 3.663225 kcal Electronic energy + Delta-G solvation = -24754.970151 eV Core-core repulsion = 21091.998456 eV Total energy + Delta-G solvation = -3662.971695 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.48001 -36.55365 -36.24117 -35.79532 -35.24519 -34.32093 -32.62201 -31.64236 -30.40686 -26.77290 -26.53831 -25.68095 -25.18954 -24.71391 -21.60335 -20.68326 -19.59949 -18.76181 -18.29264 -17.29635 -16.45951 -16.01672 -15.74539 -15.34718 -15.04416 -14.77987 -14.64085 -14.43045 -13.78356 -13.47264 -13.15601 -12.94747 -12.87323 -12.47628 -12.40326 -12.01681 -11.98404 -11.76717 -11.58675 -11.40030 -11.15438 -11.00488 -10.91542 -10.67543 -10.42768 -10.36480 -10.32731 -10.27386 -10.07052 -9.82629 -9.64796 -9.60470 -9.27065 -8.67446 -8.34849 -6.01071 -4.12376 0.82849 1.28279 2.27961 2.47492 3.29024 3.34638 3.35894 3.37697 3.56891 4.15965 4.29498 4.35187 4.42793 4.67079 4.76130 4.84961 5.01266 5.20462 5.24200 5.34800 5.41337 5.53963 5.64533 5.73121 5.80817 5.89849 5.96032 6.09319 6.42053 6.69335 6.72821 6.82343 6.94672 7.03671 7.10963 7.35126 7.52355 7.71002 7.79070 8.01198 8.13431 8.36812 8.86136 9.52674 11.00048 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.020854 B = 0.003154 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.358433 B = 8874.249618 C = 9504.809522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.043 4.043 3 C 0.282 3.718 4 N -0.524 5.524 5 C 0.225 3.775 6 C 0.213 3.787 7 N -1.125 6.125 8 S 2.595 3.405 9 O -0.962 6.962 10 O -0.961 6.961 11 C -0.581 4.581 12 C 0.082 3.918 13 C -0.161 4.161 14 C -0.165 4.165 15 C -0.502 4.502 16 H 0.060 0.940 17 C 0.064 3.936 18 N -0.882 5.882 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.275 1.275 23 N -0.294 5.294 24 N -0.482 5.482 25 H 0.440 0.560 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.413 0.587 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.026 0.974 37 H 0.094 0.906 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.097 0.903 41 H 0.027 0.973 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.033 -21.634 9.651 23.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 C 0.003 3.997 4 N -0.253 5.253 5 C -0.059 4.059 6 C 0.084 3.916 7 N -0.882 5.882 8 S 2.692 3.308 9 O -0.952 6.952 10 O -0.951 6.951 11 C -0.715 4.715 12 C 0.080 3.920 13 C -0.219 4.219 14 C -0.223 4.223 15 C -0.541 4.541 16 H 0.078 0.922 17 C -0.137 4.137 18 N -0.521 5.521 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.200 1.200 23 N -0.124 5.124 24 N -0.200 5.200 25 H 0.286 0.714 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.246 0.754 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.045 0.955 37 H 0.112 0.888 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.116 0.884 41 H 0.046 0.954 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.491 -20.084 10.160 22.777 hybrid contribution -0.374 -1.090 -0.730 1.364 sum 3.117 -21.174 9.429 23.388 Atomic orbital electron populations 1.21707 0.92554 1.02599 1.03600 1.20182 0.97919 0.85871 1.04360 1.24494 0.90571 0.97571 0.87022 1.70352 1.27797 0.99306 1.27863 1.24128 0.93348 0.95471 0.92974 1.19425 0.91782 0.84727 0.95707 1.55866 1.37151 1.30647 1.64512 1.05665 0.74546 0.71422 0.79124 1.93563 1.51899 1.78326 1.71421 1.93546 1.41196 1.76029 1.84313 1.30542 1.10394 1.10133 1.20431 1.17936 0.93540 0.83665 0.96903 1.22216 0.98128 1.04733 0.96843 1.22320 0.96744 1.05416 0.97776 1.20948 1.49039 0.92976 0.91183 0.92192 1.24940 0.95091 0.95537 0.98170 1.69817 1.48367 0.97349 1.36521 0.86562 0.78978 0.77373 0.84790 1.20566 1.21255 1.19978 1.78123 1.24478 0.93258 1.16517 1.48091 1.37138 1.09148 1.25663 0.71432 0.92494 0.90750 0.91346 0.88120 0.89696 0.88632 0.87778 0.75395 0.86255 0.85988 0.95503 0.88761 0.94533 0.94415 0.88432 0.95406 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.87 37.16 0.37 -0.40 16 2 C -0.04 -0.20 6.56 -27.88 -0.18 -0.39 16 3 C 0.28 2.54 7.51 -155.69 -1.17 1.37 16 4 N -0.52 -6.41 11.16 -8.16 -0.09 -6.50 16 5 C 0.23 3.01 7.54 -156.86 -1.18 1.83 16 6 C 0.21 2.84 6.76 -5.19 -0.04 2.80 16 7 N -1.12 -16.57 5.88 -11.66 -0.07 -16.64 16 8 S 2.59 48.70 4.49 -107.50 -0.48 48.21 16 9 O -0.96 -20.53 15.84 -57.54 -0.91 -21.44 16 10 O -0.96 -20.35 15.11 -57.54 -0.87 -21.22 16 11 C -0.58 -11.26 5.02 37.16 0.19 -11.07 16 12 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 13 C -0.16 -3.99 7.58 37.16 0.28 -3.71 16 14 C -0.16 -4.07 7.79 37.16 0.29 -3.78 16 15 C -0.50 -13.17 8.01 -34.44 -0.28 -13.44 16 16 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 17 C 0.06 1.71 5.09 -17.82 -0.09 1.62 16 18 N -0.88 -24.15 9.39 55.43 0.52 -23.63 16 19 Si 0.90 20.66 29.54 -169.99 -5.02 15.63 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 N -0.29 -3.85 12.80 32.42 0.41 -3.44 16 24 N -0.48 -4.29 7.45 32.62 0.24 -4.05 16 25 H 0.44 2.18 8.96 -182.35 -1.63 0.55 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.10 1.38 7.68 -51.93 -0.40 0.98 16 33 H 0.41 5.63 8.61 -34.47 -0.30 5.33 16 34 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16 35 H 0.12 2.15 8.14 -51.92 -0.42 1.73 16 36 H 0.03 0.63 5.96 -51.93 -0.31 0.32 16 37 H 0.09 2.51 5.99 -51.93 -0.31 2.20 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.10 2.60 6.01 -51.93 -0.31 2.29 16 41 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 42 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 351.37 15.07 5.30 5.30 Total: -1.00 -34.86 351.37 -10.18 -45.04 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.32 Total: 5.99 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -1.89 Total: -23.26 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 1.02 Total: -54.26 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -1.78 Total: -42.66 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 48.70 SS G_CDS: -0.48 Total: 48.21 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.86 -10.18 -45.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363921605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.704 kcal (2) G-P(sol) polarization free energy of solvation -34.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds