Wall clock time and date at job start Tue Mar 31 2020 11:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47052 * 2 1 4 4 N 1.30833 * 125.95843 * 305.01932 * 3 2 1 5 5 C 1.33237 * 109.82724 * 179.97438 * 4 3 2 6 6 C 1.50705 * 125.52379 * 179.97438 * 5 4 3 7 7 N 1.46504 * 109.46842 * 90.00482 * 6 5 4 8 8 S 1.65600 * 119.99852 * 164.72404 * 7 6 5 9 9 O 1.42102 * 104.27497 * 181.34417 * 8 7 6 10 10 O 1.42097 * 104.27553 * 309.19941 * 8 7 6 11 11 C 1.81398 * 104.45017 * 65.27294 * 8 7 6 12 12 C 1.52998 * 109.47181 * 179.97438 * 11 8 7 13 13 C 1.53001 * 109.47423 * 300.00514 * 12 11 8 14 14 C 1.53006 * 109.46713 * 60.00324 * 12 11 8 15 15 C 1.50698 * 109.46999 * 179.97438 * 12 11 8 16 16 H 1.07999 * 120.00430 * 357.69784 * 15 12 11 17 17 C 1.37881 * 119.99762 * 177.69736 * 15 12 11 18 18 N 1.31515 * 119.99917 * 6.58445 * 17 15 12 19 19 Si 1.86804 * 119.99978 * 186.58264 * 17 15 12 20 20 H 1.48500 * 109.46950 * 84.99479 * 19 17 15 21 21 H 1.48497 * 109.46997 * 204.99597 * 19 17 15 22 22 H 1.48506 * 109.46924 * 324.99500 * 19 17 15 23 23 N 1.30711 * 108.94587 * 0.26561 * 5 4 3 24 24 N 1.34431 * 125.96365 * 124.99867 * 3 2 1 25 25 H 0.96995 * 126.81794 * 0.02562 * 24 3 2 26 26 H 1.08993 * 109.47618 * 300.00215 * 1 2 3 27 27 H 1.09000 * 109.46775 * 60.00830 * 1 2 3 28 28 H 1.09002 * 109.47200 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47766 * 239.99369 * 2 1 3 30 30 H 1.09005 * 109.46935 * 119.99607 * 2 1 3 31 31 H 1.08990 * 109.47361 * 330.00393 * 6 5 4 32 32 H 1.08994 * 109.46845 * 210.00102 * 6 5 4 33 33 H 0.97001 * 120.00057 * 344.99447 * 7 6 5 34 34 H 1.08996 * 109.47345 * 300.00221 * 11 8 7 35 35 H 1.09004 * 109.46784 * 59.99833 * 11 8 7 36 36 H 1.08999 * 109.47291 * 66.66390 * 13 12 11 37 37 H 1.08995 * 109.46991 * 186.66775 * 13 12 11 38 38 H 1.09005 * 109.46773 * 306.66684 * 13 12 11 39 39 H 1.08996 * 109.46979 * 59.99898 * 14 12 11 40 40 H 1.08999 * 109.46820 * 180.02562 * 14 12 11 41 41 H 1.08998 * 109.46770 * 299.99803 * 14 12 11 42 42 H 0.97006 * 119.99873 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 1.7154 2.3477 -0.8673 5 6 2.3419 3.4838 -0.5638 6 6 2.2303 4.7769 -1.3297 7 7 1.1271 5.5729 -0.7859 8 16 1.0015 7.1804 -1.1631 9 8 -0.1439 7.6201 -0.4460 10 8 2.2901 7.7084 -0.8803 11 6 0.6821 7.2029 -2.9486 12 6 0.5442 8.6507 -3.4238 13 6 -0.6190 9.3201 -2.6891 14 6 1.8391 9.4101 -3.1277 15 6 0.2795 8.6693 -4.9072 16 1 0.2529 7.7435 -5.4628 17 6 0.0712 9.8684 -5.5553 18 7 0.2309 11.0021 -4.9081 19 14 -0.4377 9.8826 -7.3526 20 1 -1.9123 9.7364 -7.4507 21 1 -0.0252 11.1668 -7.9737 22 1 0.2197 8.7558 -8.0622 23 7 3.0738 3.2931 0.5023 24 7 2.8838 1.9572 0.8913 25 1 3.2894 1.5092 1.6501 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.0391 4.5613 -2.3808 32 1 3.1616 5.3356 -1.2369 33 1 0.4724 5.1591 -0.2018 34 1 1.5106 6.7257 -3.4719 35 1 -0.2405 6.6622 -3.1594 36 1 -0.3750 9.4131 -1.6309 37 1 -0.7931 10.3102 -3.1103 38 1 -1.5176 8.7137 -2.8028 39 1 2.6677 8.9332 -3.6511 40 1 1.7406 10.4416 -3.4659 41 1 2.0309 9.3966 -2.0549 42 1 0.0840 11.8456 -5.3639 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363921605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:07 Heat of formation + Delta-G solvation = -22.144397 kcal Electronic energy + Delta-G solvation = -24756.089254 eV Core-core repulsion = 21091.998456 eV Total energy + Delta-G solvation = -3664.090798 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.28020 -38.13811 -38.09824 -36.98154 -36.73155 -34.93074 -33.61235 -33.47520 -31.15912 -28.31621 -27.73496 -27.65078 -27.19789 -25.23496 -22.39212 -21.50771 -21.32537 -20.29119 -19.09288 -18.74584 -17.86878 -17.57411 -16.91969 -16.74677 -16.56111 -16.05129 -15.59142 -15.20818 -15.00663 -14.80842 -14.53991 -14.38711 -14.20557 -13.75865 -13.70614 -13.39165 -13.03898 -13.01396 -12.89348 -12.81693 -12.74426 -12.47273 -12.45234 -12.18809 -12.11657 -11.99751 -11.92696 -11.53136 -11.38257 -11.23733 -11.17084 -10.74986 -10.64539 -10.41607 -10.34885 -8.00442 -6.18171 -0.66007 0.46954 1.47330 1.49039 1.52462 1.56979 1.62133 2.08756 2.47330 2.78984 2.88516 3.21765 3.34340 3.44021 3.72127 4.00187 4.17270 4.24548 4.27227 4.33745 4.54347 4.63322 4.66712 4.71817 4.89431 4.92187 5.01939 5.03093 5.08056 5.12594 5.17746 5.19075 5.42814 5.45308 5.53088 5.68400 5.91812 6.00926 6.13351 6.15554 6.38018 6.86718 6.98388 7.49778 8.99322 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.020854 B = 0.003154 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.358433 B = 8874.249618 C = 9504.809522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.040 4.040 3 C 0.290 3.710 4 N -0.551 5.551 5 C 0.212 3.788 6 C 0.204 3.796 7 N -1.110 6.110 8 S 2.617 3.383 9 O -0.990 6.990 10 O -0.987 6.987 11 C -0.583 4.583 12 C 0.069 3.931 13 C -0.159 4.159 14 C -0.162 4.162 15 C -0.517 4.517 16 H 0.066 0.934 17 C 0.018 3.982 18 N -0.907 5.907 19 Si 0.954 3.046 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.266 1.266 23 N -0.327 5.327 24 N -0.469 5.469 25 H 0.457 0.543 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.420 0.580 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.028 0.972 37 H 0.070 0.930 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.031 0.969 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.077 -24.609 9.532 26.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 C 0.012 3.988 4 N -0.281 5.281 5 C -0.072 4.072 6 C 0.076 3.924 7 N -0.870 5.870 8 S 2.714 3.286 9 O -0.980 6.980 10 O -0.977 6.977 11 C -0.716 4.716 12 C 0.067 3.933 13 C -0.217 4.217 14 C -0.220 4.220 15 C -0.556 4.556 16 H 0.084 0.916 17 C -0.182 4.182 18 N -0.546 5.546 19 Si 0.780 3.220 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.191 1.191 23 N -0.158 5.158 24 N -0.190 5.190 25 H 0.306 0.694 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.109 0.891 29 H 0.132 0.868 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.120 0.880 33 H 0.255 0.745 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.542 -23.085 10.061 25.430 hybrid contribution -0.366 -0.280 -0.619 0.772 sum 3.176 -23.364 9.442 25.399 Atomic orbital electron populations 1.21692 0.92941 1.03597 1.02102 1.20454 0.97375 0.83406 1.06765 1.25277 0.89281 0.98569 0.85715 1.70334 1.28749 0.99617 1.29414 1.24035 0.94072 0.95776 0.93317 1.19627 0.90983 0.84863 0.96944 1.55394 1.37821 1.29359 1.64449 1.04741 0.73348 0.71975 0.78508 1.93518 1.52866 1.79618 1.72016 1.93509 1.42280 1.77325 1.84561 1.30459 1.12575 1.07395 1.21165 1.17929 0.92656 0.86389 0.96301 1.22165 0.98955 1.03700 0.96870 1.22257 0.97530 1.04174 0.97998 1.21308 1.48706 0.93182 0.92381 0.91583 1.25675 0.95268 0.95393 1.01841 1.69961 1.49090 0.97707 1.37858 0.85638 0.78554 0.77306 0.80524 1.20328 1.21501 1.19094 1.78014 1.25289 0.95565 1.16890 1.48009 1.36933 1.07906 1.26107 0.69404 0.93273 0.92961 0.89103 0.86751 0.86162 0.86514 0.88047 0.74543 0.83854 0.84031 0.95324 0.91137 0.93827 0.93873 0.90910 0.94991 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.87 71.98 0.71 -0.46 16 2 C -0.04 -0.25 6.56 29.85 0.20 -0.05 16 3 C 0.29 4.57 7.51 138.23 1.04 5.61 16 4 N -0.55 -12.65 11.16 -179.72 -2.01 -14.66 16 5 C 0.21 5.44 7.54 138.63 1.04 6.48 16 6 C 0.20 5.20 6.76 85.63 0.58 5.78 16 7 N -1.11 -31.49 5.88 -190.79 -1.12 -32.61 16 8 S 2.62 96.28 4.49 -56.49 -0.25 96.02 16 9 O -0.99 -41.90 15.84 -127.65 -2.02 -43.93 16 10 O -0.99 -41.49 15.11 -127.65 -1.93 -43.41 16 11 C -0.58 -21.71 5.02 71.98 0.36 -21.35 16 12 C 0.07 3.33 0.52 -52.93 -0.03 3.31 16 13 C -0.16 -7.92 7.58 71.98 0.55 -7.38 16 14 C -0.16 -8.04 7.79 71.98 0.56 -7.48 16 15 C -0.52 -26.72 8.01 25.60 0.20 -26.52 16 16 H 0.07 3.26 7.75 -2.91 -0.02 3.23 16 17 C 0.02 0.93 5.09 84.66 0.43 1.36 16 18 N -0.91 -50.40 9.39 21.45 0.20 -50.20 16 19 Si 0.95 42.08 29.54 68.60 2.03 44.11 16 20 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 23 N -0.33 -8.20 12.80 -51.33 -0.66 -8.86 16 24 N -0.47 -7.42 7.45 -50.70 -0.38 -7.80 16 25 H 0.46 3.43 8.96 -213.11 -1.91 1.52 16 26 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.12 -0.07 8.14 -2.38 -0.02 -0.09 16 31 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.10 2.62 7.68 -2.39 -0.02 2.60 16 33 H 0.42 11.02 8.61 -96.74 -0.83 10.19 16 34 H 0.14 4.59 8.14 -2.39 -0.02 4.57 16 35 H 0.14 4.69 8.14 -2.39 -0.02 4.67 16 36 H 0.03 1.37 5.96 -2.39 -0.01 1.35 16 37 H 0.07 3.83 5.99 -2.39 -0.01 3.82 16 38 H 0.04 2.02 8.14 -2.38 -0.02 2.01 16 39 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.07 3.97 6.01 -2.39 -0.01 3.95 16 41 H 0.03 1.52 5.46 -2.39 -0.01 1.50 16 42 H 0.26 13.90 8.31 -92.70 -0.77 13.13 16 Total: -1.00 -75.11 351.37 -2.18 -77.28 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -1.68 Total: 24.74 kcal Atomic # 6 Polarization: -46.33 SS G_CDS: 5.64 Total: -40.69 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -3.96 Total: -114.12 kcal Atomic # 8 Polarization: -83.39 SS G_CDS: -3.95 Total: -87.34 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 96.28 SS G_CDS: -0.25 Total: 96.02 kcal Total: -75.11 -2.18 -77.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363921605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.137 kcal (2) G-P(sol) polarization free energy of solvation -75.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds