Wall clock time and date at job start Tue Mar 31 2020 11:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47478 * 2 1 4 4 N 1.30507 * 125.64921 * 270.17418 * 3 2 1 5 5 C 1.34125 * 109.25185 * 180.28818 * 4 3 2 6 6 C 1.34660 * 108.02559 * 359.72975 * 5 4 3 7 7 N 1.35039 * 125.64978 * 89.99821 * 3 2 1 8 8 C 1.46500 * 126.39910 * 359.97438 * 7 3 2 9 9 C 1.52997 * 109.47044 * 84.71494 * 8 7 3 10 10 N 1.46504 * 109.46903 * 180.02562 * 9 8 7 11 11 S 1.65604 * 119.99916 * 164.44545 * 10 9 8 12 12 O 1.42105 * 106.39920 * 176.31299 * 11 10 9 13 13 O 1.42099 * 106.40133 * 309.23046 * 11 10 9 14 14 N 1.65600 * 107.22022 * 62.77188 * 11 10 9 15 15 C 1.46500 * 119.99824 * 273.11343 * 14 11 10 16 16 C 1.46499 * 120.00015 * 93.11091 * 14 11 10 17 17 C 1.50703 * 109.46925 * 95.57164 * 16 14 11 18 18 H 1.08003 * 119.99714 * 4.71238 * 17 16 14 19 19 C 1.37876 * 119.99974 * 184.71387 * 17 16 14 20 20 N 1.31518 * 119.99830 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99916 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47084 * 90.00488 * 21 19 17 23 23 H 1.48507 * 109.47202 * 210.00125 * 21 19 17 24 24 H 1.48501 * 109.47543 * 329.99991 * 21 19 17 25 25 H 1.09007 * 109.46598 * 59.99948 * 1 2 3 26 26 H 1.08996 * 109.47560 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46712 * 300.00495 * 1 2 3 28 28 H 1.09007 * 109.47088 * 239.99891 * 2 1 3 29 29 H 1.09005 * 109.47036 * 119.99779 * 2 1 3 30 30 H 1.08007 * 125.98599 * 179.72328 * 5 4 3 31 31 H 1.07999 * 126.59843 * 179.97438 * 6 5 4 32 32 H 1.08994 * 109.47038 * 324.71435 * 8 7 3 33 33 H 1.08998 * 109.46953 * 204.71458 * 8 7 3 34 34 H 1.08994 * 109.47251 * 60.00071 * 9 8 7 35 35 H 1.08998 * 109.47216 * 299.99803 * 9 8 7 36 36 H 0.96999 * 119.99675 * 344.43646 * 10 9 8 37 37 H 1.09004 * 109.47363 * 89.99891 * 15 14 11 38 38 H 1.09000 * 109.47313 * 209.99964 * 15 14 11 39 39 H 1.08997 * 109.47066 * 329.99809 * 15 14 11 40 40 H 1.08994 * 109.46859 * 215.56629 * 16 14 11 41 41 H 1.09001 * 109.46824 * 335.57238 * 16 14 11 42 42 H 0.96996 * 119.99979 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2830 2.1389 -1.0605 5 6 2.7190 3.3495 -0.6819 6 6 2.7338 3.3849 0.6642 7 7 2.2948 2.1628 1.0973 8 6 2.1437 1.7373 2.4910 9 6 3.4029 0.9907 2.9356 10 7 3.2516 0.5646 4.3291 11 16 4.2678 -0.5808 4.9598 12 8 3.9251 -0.7088 6.3330 13 8 4.2551 -1.6728 4.0506 14 7 5.8000 0.0459 4.9166 15 6 6.6204 -0.1075 3.7126 16 6 6.3350 0.7537 6.0823 17 6 7.1491 -0.1996 6.9188 18 1 7.3205 -1.2088 6.5746 19 6 7.6748 0.2167 8.1235 20 7 7.4655 1.4455 8.5428 21 14 8.6832 -0.9651 9.1606 22 1 10.1151 -0.8580 8.7820 23 1 8.5241 -0.6229 10.5969 24 1 8.2122 -2.3540 8.9277 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0078 4.1548 -1.3412 31 1 3.0346 4.2172 1.2831 32 1 1.2804 1.0776 2.5779 33 1 1.9975 2.6124 3.1242 34 1 4.2662 1.6503 2.8487 35 1 3.5491 0.1156 2.3024 36 1 2.5562 0.9536 4.8824 37 1 6.4516 0.7394 3.0475 38 1 7.6731 -0.1453 3.9926 39 1 6.3470 -1.0308 3.2018 40 1 6.9679 1.5761 5.7490 41 1 5.5113 1.1474 6.6779 42 1 7.8357 1.7385 9.3901 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364063407.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:04 Heat of formation + Delta-G solvation = -18.998914 kcal Electronic energy + Delta-G solvation = -24889.516761 eV Core-core repulsion = 21225.562362 eV Total energy + Delta-G solvation = -3663.954399 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.31459 -36.86216 -36.38862 -35.57910 -35.28668 -34.01976 -33.41285 -32.49504 -28.99094 -28.22879 -27.84704 -25.15940 -24.25490 -23.31992 -22.36620 -21.56185 -19.96754 -19.03829 -17.58213 -17.01067 -16.88101 -16.64111 -16.09806 -15.56453 -15.35497 -14.90758 -14.64554 -14.34032 -14.27828 -13.69275 -13.58329 -13.45972 -13.35883 -12.94630 -12.48004 -12.39781 -12.23667 -12.15957 -11.79275 -11.72115 -11.66762 -11.49267 -11.37125 -11.23046 -11.13051 -10.76343 -10.58289 -10.12976 -10.09934 -9.85788 -9.83296 -9.56938 -8.53125 -8.50005 -8.16563 -6.12100 -4.16565 1.04797 1.84858 2.48194 2.99568 3.27974 3.34608 3.38761 3.42193 3.98203 4.19279 4.28327 4.35669 4.40195 4.56937 4.82252 4.88513 4.91188 5.00542 5.13901 5.18191 5.23151 5.30858 5.38963 5.49537 5.54602 5.60509 5.72405 5.75992 5.89376 5.90611 6.12125 6.20337 6.46925 6.59582 6.86443 6.98218 7.16036 7.31418 7.52607 7.85181 7.94730 8.13716 8.85996 9.49251 10.96589 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.024670 B = 0.003185 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.715706 B = 8788.980861 C = 9242.361705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.045 4.045 3 C 0.212 3.788 4 N -0.491 5.491 5 C -0.029 4.029 6 C -0.056 4.056 7 N -0.453 5.453 8 C 0.097 3.903 9 C 0.108 3.892 10 N -1.134 6.134 11 S 2.782 3.218 12 O -0.959 6.959 13 O -0.995 6.995 14 N -0.994 5.994 15 C 0.093 3.907 16 C 0.256 3.744 17 C -0.533 4.533 18 H 0.061 0.939 19 C 0.063 3.937 20 N -0.895 5.895 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.284 1.284 24 H -0.272 1.272 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.169 0.831 31 H 0.175 0.825 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.414 0.586 37 H 0.037 0.963 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.032 0.968 41 H 0.043 0.957 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.871 3.205 -14.964 19.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 C -0.051 4.051 4 N -0.210 5.210 5 C -0.177 4.177 6 C -0.188 4.188 7 N -0.137 5.137 8 C -0.027 4.027 9 C -0.020 4.020 10 N -0.892 5.892 11 S 2.789 3.211 12 O -0.942 6.942 13 O -0.978 6.978 14 N -0.837 5.837 15 C -0.054 4.054 16 C 0.134 3.866 17 C -0.572 4.572 18 H 0.079 0.921 19 C -0.140 4.140 20 N -0.534 5.534 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.210 1.210 24 H -0.197 1.197 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.115 0.885 29 H 0.101 0.899 30 H 0.186 0.814 31 H 0.192 0.808 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.247 0.753 37 H 0.056 0.944 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.042 2.106 -15.274 19.563 hybrid contribution 0.655 0.575 1.682 1.894 sum -11.387 2.681 -13.592 17.933 Atomic orbital electron populations 1.21735 0.93946 1.02401 1.02317 1.20053 0.96451 0.87370 1.04566 1.23323 1.03864 0.96584 0.81285 1.70252 1.18229 1.04266 1.28223 1.22283 1.06302 0.96349 0.92781 1.22766 1.09085 0.89986 0.96976 1.45309 1.49344 1.12038 1.06964 1.22069 0.99387 1.01549 0.79717 1.21462 0.97650 1.00033 0.82890 1.56290 1.50719 1.63133 1.19102 1.02004 0.72880 0.73277 0.72917 1.93659 1.83270 1.85197 1.32094 1.93533 1.86951 1.50441 1.66871 1.57588 1.29620 1.73701 1.22791 1.21395 0.98078 0.99841 0.86073 1.19089 0.95131 0.91977 0.80365 1.21490 1.32587 0.98841 1.04299 0.92094 1.24939 0.96375 0.95380 0.97275 1.69913 1.45155 1.16600 1.21686 0.86496 0.80118 0.81399 0.79449 1.20562 1.21004 1.19674 0.91921 0.91446 0.92950 0.88511 0.89946 0.81364 0.80772 0.88145 0.87965 0.90911 0.89908 0.75345 0.94432 0.90181 0.91540 0.94971 0.93943 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 37.16 0.37 -0.72 16 2 C -0.05 -0.40 6.09 -27.88 -0.17 -0.57 16 3 C 0.21 2.37 7.16 -155.41 -1.11 1.25 16 4 N -0.49 -6.33 11.25 -10.82 -0.12 -6.45 16 5 C -0.03 -0.32 11.87 -17.82 -0.21 -0.53 16 6 C -0.06 -0.54 11.58 -16.56 -0.19 -0.73 16 7 N -0.45 -4.47 2.75 -113.91 -0.31 -4.78 16 8 C 0.10 0.79 5.82 -4.04 -0.02 0.76 16 9 C 0.11 1.13 6.58 -4.04 -0.03 1.11 16 10 N -1.13 -14.24 6.05 -10.61 -0.06 -14.30 16 11 S 2.78 51.28 6.09 -107.50 -0.65 50.63 16 12 O -0.96 -21.75 16.99 -57.17 -0.97 -22.72 16 13 O -0.99 -19.45 16.34 -57.17 -0.93 -20.38 16 14 N -0.99 -19.61 3.23 -123.05 -0.40 -20.00 16 15 C 0.09 1.52 10.69 59.85 0.64 2.16 16 16 C 0.26 6.22 5.10 -5.19 -0.03 6.19 16 17 C -0.53 -14.69 9.38 -34.44 -0.32 -15.01 16 18 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 21 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.69 7.33 -51.93 -0.38 0.31 16 30 H 0.17 1.43 8.06 -52.48 -0.42 1.00 16 31 H 0.18 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.10 0.69 7.94 -51.93 -0.41 0.27 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.77 8.05 -51.93 -0.42 0.36 16 35 H 0.08 0.92 7.29 -51.93 -0.38 0.54 16 36 H 0.41 4.24 8.66 -34.48 -0.30 3.94 16 37 H 0.04 0.50 8.05 -51.93 -0.42 0.09 16 38 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 39 H 0.07 1.03 7.05 -51.93 -0.37 0.67 16 40 H 0.03 0.79 8.11 -51.93 -0.42 0.37 16 41 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 367.46 15.07 5.54 5.54 Total: -1.00 -35.44 367.46 -9.78 -45.22 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.41 Total: 0.14 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -1.17 Total: -4.43 kcal Atomic # 7 Polarization: -70.37 SS G_CDS: -0.16 Total: -70.53 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -1.91 Total: -43.10 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 51.28 SS G_CDS: -0.65 Total: 50.63 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.44 -9.78 -45.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364063407.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.224 kcal (2) G-P(sol) polarization free energy of solvation -35.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds