Wall clock time and date at job start Tue Mar 31 2020 11:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47478 * 2 1 4 4 N 1.30507 * 125.64921 * 270.17418 * 3 2 1 5 5 C 1.34125 * 109.25185 * 180.28818 * 4 3 2 6 6 C 1.34660 * 108.02559 * 359.72975 * 5 4 3 7 7 N 1.35039 * 125.64978 * 89.99821 * 3 2 1 8 8 C 1.46500 * 126.39910 * 359.97438 * 7 3 2 9 9 C 1.52997 * 109.47044 * 84.71494 * 8 7 3 10 10 N 1.46504 * 109.46903 * 180.02562 * 9 8 7 11 11 S 1.65604 * 119.99916 * 164.44545 * 10 9 8 12 12 O 1.42105 * 106.39920 * 176.31299 * 11 10 9 13 13 O 1.42099 * 106.40133 * 309.23046 * 11 10 9 14 14 N 1.65600 * 107.22022 * 62.77188 * 11 10 9 15 15 C 1.46500 * 119.99824 * 273.11343 * 14 11 10 16 16 C 1.46499 * 120.00015 * 93.11091 * 14 11 10 17 17 C 1.50703 * 109.46925 * 95.57164 * 16 14 11 18 18 H 1.08003 * 119.99714 * 4.71238 * 17 16 14 19 19 C 1.37876 * 119.99974 * 184.71387 * 17 16 14 20 20 N 1.31518 * 119.99830 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99916 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47084 * 90.00488 * 21 19 17 23 23 H 1.48507 * 109.47202 * 210.00125 * 21 19 17 24 24 H 1.48501 * 109.47543 * 329.99991 * 21 19 17 25 25 H 1.09007 * 109.46598 * 59.99948 * 1 2 3 26 26 H 1.08996 * 109.47560 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46712 * 300.00495 * 1 2 3 28 28 H 1.09007 * 109.47088 * 239.99891 * 2 1 3 29 29 H 1.09005 * 109.47036 * 119.99779 * 2 1 3 30 30 H 1.08007 * 125.98599 * 179.72328 * 5 4 3 31 31 H 1.07999 * 126.59843 * 179.97438 * 6 5 4 32 32 H 1.08994 * 109.47038 * 324.71435 * 8 7 3 33 33 H 1.08998 * 109.46953 * 204.71458 * 8 7 3 34 34 H 1.08994 * 109.47251 * 60.00071 * 9 8 7 35 35 H 1.08998 * 109.47216 * 299.99803 * 9 8 7 36 36 H 0.96999 * 119.99675 * 344.43646 * 10 9 8 37 37 H 1.09004 * 109.47363 * 89.99891 * 15 14 11 38 38 H 1.09000 * 109.47313 * 209.99964 * 15 14 11 39 39 H 1.08997 * 109.47066 * 329.99809 * 15 14 11 40 40 H 1.08994 * 109.46859 * 215.56629 * 16 14 11 41 41 H 1.09001 * 109.46824 * 335.57238 * 16 14 11 42 42 H 0.96996 * 119.99979 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2830 2.1389 -1.0605 5 6 2.7190 3.3495 -0.6819 6 6 2.7338 3.3849 0.6642 7 7 2.2948 2.1628 1.0973 8 6 2.1437 1.7373 2.4910 9 6 3.4029 0.9907 2.9356 10 7 3.2516 0.5646 4.3291 11 16 4.2678 -0.5808 4.9598 12 8 3.9251 -0.7088 6.3330 13 8 4.2551 -1.6728 4.0506 14 7 5.8000 0.0459 4.9166 15 6 6.6204 -0.1075 3.7126 16 6 6.3350 0.7537 6.0823 17 6 7.1491 -0.1996 6.9188 18 1 7.3205 -1.2088 6.5746 19 6 7.6748 0.2167 8.1235 20 7 7.4655 1.4455 8.5428 21 14 8.6832 -0.9651 9.1606 22 1 10.1151 -0.8580 8.7820 23 1 8.5241 -0.6229 10.5969 24 1 8.2122 -2.3540 8.9277 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0078 4.1548 -1.3412 31 1 3.0346 4.2172 1.2831 32 1 1.2804 1.0776 2.5779 33 1 1.9975 2.6124 3.1242 34 1 4.2662 1.6503 2.8487 35 1 3.5491 0.1156 2.3024 36 1 2.5562 0.9536 4.8824 37 1 6.4516 0.7394 3.0475 38 1 7.6731 -0.1453 3.9926 39 1 6.3470 -1.0308 3.2018 40 1 6.9679 1.5761 5.7490 41 1 5.5113 1.1474 6.6779 42 1 7.8357 1.7385 9.3901 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364063407.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:03 Heat of formation + Delta-G solvation = -44.716977 kcal Electronic energy + Delta-G solvation = -24890.631980 eV Core-core repulsion = 21225.562362 eV Total energy + Delta-G solvation = -3665.069618 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.06824 -38.35592 -37.42663 -37.19674 -36.88659 -34.69799 -34.52253 -34.28526 -29.75640 -29.68273 -29.03335 -26.81713 -24.98243 -24.24574 -24.06386 -22.31030 -20.88096 -20.22358 -19.03149 -18.48126 -18.34413 -17.83672 -17.41756 -16.86295 -16.34865 -16.20356 -15.74870 -15.39145 -15.11445 -14.99071 -14.94758 -14.37180 -14.29212 -14.09923 -13.93688 -13.73982 -13.35894 -13.20738 -13.18194 -13.05545 -13.01767 -12.93650 -12.76503 -12.49204 -12.40463 -12.37055 -12.01581 -11.98461 -11.76994 -10.94261 -10.73735 -10.61548 -10.54660 -9.82456 -9.28172 -8.21959 -6.33721 -0.39484 1.09190 1.38767 1.40973 1.51190 1.68006 2.10708 2.20175 2.39734 2.62531 3.09613 3.39133 3.51033 3.59785 3.68680 3.88434 4.04942 4.17315 4.24810 4.35763 4.37150 4.44119 4.52628 4.67631 4.70752 4.76876 4.80405 4.85329 5.02002 5.04866 5.10229 5.18638 5.30058 5.39238 5.42285 5.68182 5.82440 5.87039 6.05060 6.10692 6.25032 6.74955 7.17553 7.35601 8.85622 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.024670 B = 0.003185 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.715706 B = 8788.980861 C = 9242.361705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.047 4.047 3 C 0.199 3.801 4 N -0.528 5.528 5 C -0.054 4.054 6 C -0.050 4.050 7 N -0.453 5.453 8 C 0.100 3.900 9 C 0.103 3.897 10 N -1.114 6.114 11 S 2.801 3.199 12 O -1.006 7.006 13 O -1.007 7.007 14 N -1.002 6.002 15 C 0.087 3.913 16 C 0.271 3.729 17 C -0.553 4.553 18 H 0.053 0.947 19 C 0.013 3.987 20 N -0.923 5.923 21 Si 0.955 3.045 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.274 1.274 25 H 0.051 0.949 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.183 0.817 31 H 0.203 0.797 32 H 0.116 0.884 33 H 0.126 0.874 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.427 0.573 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.027 0.973 41 H 0.023 0.977 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.230 3.423 -15.217 19.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 C -0.063 4.063 4 N -0.248 5.248 5 C -0.201 4.201 6 C -0.183 4.183 7 N -0.136 5.136 8 C -0.024 4.024 9 C -0.024 4.024 10 N -0.878 5.878 11 S 2.808 3.192 12 O -0.990 6.990 13 O -0.990 6.990 14 N -0.844 5.844 15 C -0.059 4.059 16 C 0.147 3.853 17 C -0.593 4.593 18 H 0.071 0.929 19 C -0.187 4.187 20 N -0.562 5.562 21 Si 0.780 3.220 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.199 1.199 25 H 0.070 0.930 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.200 0.800 31 H 0.220 0.780 32 H 0.134 0.866 33 H 0.144 0.856 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.264 0.736 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.045 0.955 41 H 0.041 0.959 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.397 2.320 -15.544 20.017 hybrid contribution 0.723 0.538 1.650 1.880 sum -11.674 2.857 -13.894 18.371 Atomic orbital electron populations 1.21698 0.92915 1.03246 1.02002 1.20142 0.97317 0.86375 1.04733 1.23678 1.03889 0.97284 0.81467 1.70213 1.19478 1.05450 1.29616 1.22676 1.07043 0.96396 0.93981 1.23225 1.07718 0.90436 0.96896 1.45399 1.49013 1.11974 1.07238 1.22149 0.98431 1.02665 0.79112 1.21627 0.99357 1.00299 0.81106 1.55648 1.49648 1.62260 1.20223 1.01173 0.72698 0.73546 0.71766 1.93594 1.83933 1.86234 1.35194 1.93515 1.87131 1.51587 1.66748 1.57469 1.30843 1.73438 1.22654 1.21595 0.97208 1.01765 0.85300 1.18633 0.93921 0.91419 0.81283 1.21867 1.33151 0.99070 1.05176 0.92881 1.25733 0.97491 0.96945 0.98514 1.69996 1.46077 1.17948 1.22215 0.85601 0.79249 0.79129 0.78021 1.19124 1.20411 1.19854 0.92967 0.90016 0.92484 0.88783 0.89310 0.80027 0.78041 0.86551 0.85593 0.90551 0.90327 0.73619 0.91129 0.91074 0.90688 0.95467 0.95904 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.89 71.98 0.71 -1.17 16 2 C -0.05 -0.77 6.09 29.85 0.18 -0.59 16 3 C 0.20 4.19 7.16 138.13 0.99 5.18 16 4 N -0.53 -13.29 11.25 -188.13 -2.12 -15.41 16 5 C -0.05 -1.12 11.87 83.52 0.99 -0.13 16 6 C -0.05 -0.85 11.58 83.08 0.96 0.11 16 7 N -0.45 -7.86 2.75 -514.30 -1.42 -9.27 16 8 C 0.10 1.31 5.82 86.38 0.50 1.81 16 9 C 0.10 1.90 6.58 86.38 0.57 2.47 16 10 N -1.11 -25.70 6.05 -187.50 -1.13 -26.83 16 11 S 2.80 100.94 6.09 -56.49 -0.34 100.59 16 12 O -1.01 -45.81 16.99 -128.00 -2.17 -47.99 16 13 O -1.01 -38.19 16.34 -128.00 -2.09 -40.28 16 14 N -1.00 -38.88 3.23 -543.23 -1.75 -40.64 16 15 C 0.09 2.72 10.69 127.77 1.37 4.09 16 16 C 0.27 13.22 5.10 85.63 0.44 13.65 16 17 C -0.55 -30.70 9.38 25.60 0.24 -30.46 16 18 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 19 C 0.01 0.72 5.46 84.65 0.46 1.18 16 20 N -0.92 -53.21 13.29 21.45 0.28 -52.92 16 21 Si 0.96 43.97 29.54 68.60 2.03 45.99 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 25 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.09 1.32 7.33 -2.38 -0.02 1.30 16 30 H 0.18 2.93 8.06 -2.91 -0.02 2.90 16 31 H 0.20 2.10 8.06 -2.91 -0.02 2.07 16 32 H 0.12 1.19 7.94 -2.39 -0.02 1.17 16 33 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.40 8.05 -2.39 -0.02 1.38 16 35 H 0.08 1.56 7.29 -2.39 -0.02 1.55 16 36 H 0.43 7.77 8.66 -96.74 -0.84 6.93 16 37 H 0.07 1.73 8.05 -2.38 -0.02 1.71 16 38 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 39 H 0.07 2.22 7.05 -2.39 -0.02 2.20 16 40 H 0.03 1.34 8.11 -2.39 -0.02 1.32 16 41 H 0.02 1.20 7.50 -2.39 -0.02 1.18 16 42 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -76.38 367.46 -1.13 -77.50 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.18 Total: 13.10 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 7.41 Total: -3.85 kcal Atomic # 7 Polarization: -138.94 SS G_CDS: -6.13 Total: -145.07 kcal Atomic # 8 Polarization: -84.00 SS G_CDS: -4.27 Total: -88.27 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 100.94 SS G_CDS: -0.34 Total: 100.59 kcal Total: -76.38 -1.13 -77.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364063407.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.787 kcal (2) G-P(sol) polarization free energy of solvation -76.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds