Wall clock time and date at job start Tue Mar 31 2020 11:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30840 * 125.89745 * 2 1 4 4 N 1.40081 * 108.20651 * 180.02562 * 3 2 1 5 5 H 0.97008 * 126.03602 * 180.02562 * 4 3 2 6 6 C 1.34950 * 107.92720 * 359.75700 * 4 3 2 7 7 C 1.50696 * 126.12974 * 180.23834 * 6 4 3 8 8 C 1.35318 * 107.74337 * 0.39145 * 6 4 3 9 9 C 1.50697 * 126.03830 * 179.87235 * 8 6 4 10 10 N 1.46504 * 109.46947 * 269.71220 * 9 8 6 11 11 S 1.65604 * 119.99687 * 165.00011 * 10 9 8 12 12 O 1.42099 * 106.40020 * 311.46268 * 11 10 9 13 13 O 1.42107 * 106.39868 * 178.54243 * 11 10 9 14 14 N 1.65602 * 107.21736 * 65.00410 * 11 10 9 15 15 C 1.46505 * 119.99670 * 269.99702 * 14 11 10 16 16 C 1.46496 * 120.00030 * 89.99816 * 14 11 10 17 17 H 1.08993 * 109.47272 * 359.97438 * 16 14 11 18 18 C 1.52997 * 109.47161 * 240.00007 * 16 14 11 19 19 C 1.50696 * 109.46880 * 119.99921 * 16 14 11 20 20 H 1.07991 * 120.00403 * 5.37934 * 19 16 14 21 21 C 1.37882 * 119.99857 * 185.37666 * 19 16 14 22 22 N 1.31514 * 120.00102 * 184.89785 * 21 19 16 23 23 Si 1.86804 * 120.00107 * 5.17501 * 21 19 16 24 24 H 1.48493 * 109.47271 * 269.72415 * 23 21 19 25 25 H 1.48501 * 109.46725 * 29.72337 * 23 21 19 26 26 H 1.48499 * 109.47261 * 149.72095 * 23 21 19 27 27 H 1.09003 * 109.46730 * 269.96829 * 1 2 3 28 28 H 1.08998 * 109.47708 * 29.97013 * 1 2 3 29 29 H 1.09002 * 109.47255 * 149.97653 * 1 2 3 30 30 H 1.08995 * 109.47473 * 270.18125 * 7 6 4 31 31 H 1.09002 * 109.47017 * 30.17936 * 7 6 4 32 32 H 1.08996 * 109.47043 * 150.17542 * 7 6 4 33 33 H 1.08999 * 109.46899 * 149.71999 * 9 8 6 34 34 H 1.08998 * 109.47166 * 29.71505 * 9 8 6 35 35 H 0.97000 * 120.00238 * 345.00671 * 10 9 8 36 36 H 1.08993 * 109.46971 * 269.99890 * 15 14 11 37 37 H 1.08998 * 109.47119 * 30.00593 * 15 14 11 38 38 H 1.08996 * 109.46769 * 150.00377 * 15 14 11 39 39 H 1.08997 * 109.47518 * 174.90733 * 18 16 14 40 40 H 1.09004 * 109.47390 * 294.90389 * 18 16 14 41 41 H 1.08998 * 109.47541 * 54.90089 * 18 16 14 42 42 H 0.97000 * 119.99849 * 355.27532 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0006 5 1 4.3907 1.2081 -0.0004 6 6 3.6142 -0.7153 0.0045 7 6 4.8350 -1.5987 0.0109 8 6 2.3272 -1.1330 -0.0006 9 6 1.8600 -2.5657 -0.0004 10 7 1.7083 -3.0301 -1.3816 11 16 1.5707 -4.6493 -1.7003 12 8 2.6174 -5.2897 -0.9836 13 8 1.4053 -4.7688 -3.1066 14 7 0.1529 -5.1646 -1.0172 15 6 0.1411 -5.6570 0.3626 16 6 -1.0895 -5.1282 -1.7926 17 1 -0.8850 -4.7347 -2.7882 18 6 -2.1047 -4.2267 -1.0872 19 6 -1.6505 -6.5220 -1.9082 20 1 -1.1823 -7.3383 -1.3784 21 6 -2.7617 -6.7552 -2.6905 22 7 -3.3090 -7.9508 -2.7158 23 14 -3.4853 -5.3749 -3.7204 24 1 -4.5103 -4.6503 -2.9270 25 1 -2.4066 -4.4330 -4.1136 26 1 -4.1141 -5.9441 -4.9394 27 1 -0.3633 -0.0006 1.0277 28 1 -0.3634 0.8902 -0.5133 29 1 -0.3634 -0.8898 -0.5142 30 1 5.1339 -1.8130 -1.0152 31 1 5.6489 -1.0901 0.5276 32 1 4.6054 -2.5321 0.5249 33 1 0.9014 -2.6352 0.5136 34 1 2.5937 -3.1870 0.5133 35 1 1.6885 -2.3891 -2.1094 36 1 0.3214 -6.7319 0.3663 37 1 0.9221 -5.1555 0.9340 38 1 -0.8292 -5.4498 0.8140 39 1 -2.9951 -4.1269 -1.7079 40 1 -2.3778 -4.6676 -0.1285 41 1 -1.6646 -3.2432 -0.9225 42 1 -2.8919 -8.6853 -2.2389 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364078049.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:09 Heat of formation + Delta-G solvation = -9.276919 kcal Electronic energy + Delta-G solvation = -25729.510596 eV Core-core repulsion = 22065.977774 eV Total energy + Delta-G solvation = -3663.532822 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.59814 -36.77264 -36.38444 -35.41609 -35.29303 -33.61397 -32.53416 -31.51571 -29.88353 -28.42171 -27.51576 -25.78168 -24.96065 -24.58627 -20.72288 -20.42317 -19.73454 -18.79889 -17.67408 -17.54129 -17.30998 -16.65858 -16.01008 -15.31421 -14.84151 -14.45225 -14.08793 -13.77312 -13.61497 -13.52101 -13.41276 -13.22487 -13.05314 -12.69309 -12.55002 -12.48199 -12.16570 -12.10192 -12.05562 -11.73430 -11.60769 -11.54994 -11.53228 -11.26340 -10.86101 -10.67529 -10.43441 -10.02721 -9.73746 -9.46294 -9.35637 -8.98773 -8.72557 -8.47650 -8.12003 -6.42984 -4.10941 1.08532 1.61736 2.43870 2.59619 3.34435 3.46360 3.51645 3.58223 4.07347 4.37052 4.42867 4.46644 4.76555 4.84121 5.04336 5.08094 5.19396 5.25643 5.28654 5.41964 5.50569 5.52647 5.61920 5.78554 5.81180 5.97249 5.99959 6.03689 6.22007 6.29673 6.36338 6.44644 6.53906 6.55913 6.87058 7.02471 7.12657 7.32690 7.46376 7.51734 7.95152 8.37874 8.89216 9.59534 10.95309 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.019034 B = 0.004440 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.687188 B = 6304.801575 C = 7057.567112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.097 3.903 3 N -0.299 5.299 4 N -0.478 5.478 5 H 0.437 0.563 6 C 0.110 3.890 7 C -0.100 4.100 8 C -0.247 4.247 9 C 0.201 3.799 10 N -1.130 6.130 11 S 2.779 3.221 12 O -0.993 6.993 13 O -0.976 6.976 14 N -0.984 5.984 15 C 0.110 3.890 16 C 0.239 3.761 17 H 0.056 0.944 18 C -0.159 4.159 19 C -0.596 4.596 20 H 0.064 0.936 21 C 0.030 3.970 22 N -0.910 5.910 23 Si 1.048 2.952 24 H -0.282 1.282 25 H -0.275 1.275 26 H -0.287 1.287 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.412 0.588 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.032 0.968 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.347 16.516 8.321 22.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 N -0.122 5.122 4 N -0.185 5.185 5 H 0.281 0.719 6 C -0.020 4.020 7 C -0.158 4.158 8 C -0.260 4.260 9 C 0.074 3.926 10 N -0.889 5.889 11 S 2.787 3.213 12 O -0.977 6.977 13 O -0.960 6.960 14 N -0.826 5.826 15 C -0.036 4.036 16 C 0.134 3.866 17 H 0.073 0.927 18 C -0.219 4.219 19 C -0.635 4.635 20 H 0.082 0.918 21 C -0.175 4.175 22 N -0.544 5.544 23 Si 0.877 3.123 24 H -0.209 1.209 25 H -0.201 1.201 26 H -0.214 1.214 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.245 0.755 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.757 17.462 6.984 22.179 hybrid contribution 1.400 -0.425 0.993 1.769 sum 13.157 17.036 7.977 22.956 Atomic orbital electron populations 1.20286 0.86360 1.03953 1.03337 1.22303 0.97107 0.89938 0.97647 1.77321 0.86351 1.22241 1.26258 1.46187 1.07438 1.04779 1.60135 0.71891 1.20987 0.97072 0.84906 0.99084 1.20572 0.92574 0.98654 1.04026 1.19659 0.91343 0.95847 1.19145 1.19336 1.00665 0.90064 0.82536 1.56327 1.91021 1.27754 1.13817 1.01983 0.73287 0.72801 0.73194 1.93536 1.55130 1.74058 1.74934 1.93610 1.86505 1.85464 1.30383 1.57475 1.25215 1.76945 1.22944 1.21170 1.01680 0.99242 0.81558 1.19177 0.79899 0.97613 0.89923 0.92680 1.22437 0.99869 0.97744 1.01806 1.22255 1.15755 0.92942 1.32570 0.91772 1.25708 0.94277 1.01340 0.96166 1.70806 1.39297 1.01374 1.42958 0.83981 0.76400 0.75116 0.76795 1.20912 1.20080 1.21401 0.90204 0.90763 0.89664 0.89689 0.90980 0.88857 0.91026 0.90302 0.75480 0.93183 0.93109 0.90980 0.93035 0.92492 0.94946 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.12 36.00 0.36 -0.40 16 2 C 0.10 1.12 7.22 -82.41 -0.59 0.53 16 3 N -0.30 -3.57 12.70 33.67 0.43 -3.15 16 4 N -0.48 -4.46 7.36 33.48 0.25 -4.21 16 5 H 0.44 2.65 8.96 -182.60 -1.64 1.01 16 6 C 0.11 1.06 7.21 -82.26 -0.59 0.46 16 7 C -0.10 -0.71 10.22 36.00 0.37 -0.34 16 8 C -0.25 -2.74 5.50 -105.05 -0.58 -3.32 16 9 C 0.20 2.30 6.18 -5.19 -0.03 2.27 16 10 N -1.13 -15.26 6.05 -11.66 -0.07 -15.33 16 11 S 2.78 51.01 6.09 -107.50 -0.66 50.35 16 12 O -0.99 -19.31 16.68 -57.17 -0.95 -20.26 16 13 O -0.98 -21.75 16.70 -57.17 -0.95 -22.71 16 14 N -0.98 -19.13 3.12 -115.86 -0.36 -19.50 16 15 C 0.11 1.84 9.48 59.85 0.57 2.41 16 16 C 0.24 5.41 2.20 -69.09 -0.15 5.26 16 17 H 0.06 1.33 5.41 -51.93 -0.28 1.05 16 18 C -0.16 -3.09 8.65 37.16 0.32 -2.77 16 19 C -0.60 -16.22 8.77 -34.44 -0.30 -16.52 16 20 H 0.06 1.88 7.74 -52.49 -0.41 1.47 16 21 C 0.03 0.86 5.43 -17.82 -0.10 0.76 16 22 N -0.91 -27.60 13.70 55.43 0.76 -26.84 16 23 Si 1.05 24.98 25.28 -169.99 -4.30 20.69 16 24 H -0.28 -6.21 6.82 56.52 0.39 -5.82 16 25 H -0.27 -6.17 6.35 56.52 0.36 -5.81 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.81 7.92 -51.93 -0.41 0.40 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.70 7.14 -51.93 -0.37 0.33 16 33 H 0.07 0.76 7.92 -51.93 -0.41 0.35 16 34 H 0.08 0.87 6.75 -51.93 -0.35 0.52 16 35 H 0.41 5.14 8.64 -34.47 -0.30 4.85 16 36 H 0.05 0.90 8.09 -51.93 -0.42 0.48 16 37 H 0.05 0.68 7.79 -51.93 -0.40 0.28 16 38 H 0.07 1.15 6.53 -51.93 -0.34 0.81 16 39 H 0.05 1.03 4.41 -51.93 -0.23 0.80 16 40 H 0.06 1.07 6.88 -51.93 -0.36 0.71 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.27 8.11 8.72 -40.82 -0.36 7.75 16 LS Contribution 352.55 15.07 5.31 5.31 Total: -1.00 -35.52 352.55 -8.52 -44.03 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.24 Total: 3.28 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -0.73 Total: -11.67 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: 1.00 Total: -69.03 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -1.91 Total: -42.97 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -4.30 Total: 20.69 kcal Atomic # 16 Polarization: 51.01 SS G_CDS: -0.66 Total: 50.35 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.52 -8.52 -44.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364078049.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.755 kcal (2) G-P(sol) polarization free energy of solvation -35.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds