Wall clock time and date at job start Tue Mar 31 2020 11:05:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 N 1.30840 * 125.89745 * 2 1
4 4 N 1.40081 * 108.20651 * 180.02562 * 3 2 1
5 5 H 0.97008 * 126.03602 * 180.02562 * 4 3 2
6 6 C 1.34950 * 107.92720 * 359.75700 * 4 3 2
7 7 C 1.50696 * 126.12974 * 180.23834 * 6 4 3
8 8 C 1.35318 * 107.74337 * 0.39145 * 6 4 3
9 9 C 1.50697 * 126.03830 * 179.87235 * 8 6 4
10 10 N 1.46504 * 109.46947 * 269.71220 * 9 8 6
11 11 S 1.65604 * 119.99687 * 165.00011 * 10 9 8
12 12 O 1.42099 * 106.40020 * 311.46268 * 11 10 9
13 13 O 1.42107 * 106.39868 * 178.54243 * 11 10 9
14 14 N 1.65602 * 107.21736 * 65.00410 * 11 10 9
15 15 C 1.46505 * 119.99670 * 269.99702 * 14 11 10
16 16 C 1.46496 * 120.00030 * 89.99816 * 14 11 10
17 17 H 1.08993 * 109.47272 * 359.97438 * 16 14 11
18 18 C 1.52997 * 109.47161 * 240.00007 * 16 14 11
19 19 C 1.50696 * 109.46880 * 119.99921 * 16 14 11
20 20 H 1.07991 * 120.00403 * 5.37934 * 19 16 14
21 21 C 1.37882 * 119.99857 * 185.37666 * 19 16 14
22 22 N 1.31514 * 120.00102 * 184.89785 * 21 19 16
23 23 Si 1.86804 * 120.00107 * 5.17501 * 21 19 16
24 24 H 1.48493 * 109.47271 * 269.72415 * 23 21 19
25 25 H 1.48501 * 109.46725 * 29.72337 * 23 21 19
26 26 H 1.48499 * 109.47261 * 149.72095 * 23 21 19
27 27 H 1.09003 * 109.46730 * 269.96829 * 1 2 3
28 28 H 1.08998 * 109.47708 * 29.97013 * 1 2 3
29 29 H 1.09002 * 109.47255 * 149.97653 * 1 2 3
30 30 H 1.08995 * 109.47473 * 270.18125 * 7 6 4
31 31 H 1.09002 * 109.47017 * 30.17936 * 7 6 4
32 32 H 1.08996 * 109.47043 * 150.17542 * 7 6 4
33 33 H 1.08999 * 109.46899 * 149.71999 * 9 8 6
34 34 H 1.08998 * 109.47166 * 29.71505 * 9 8 6
35 35 H 0.97000 * 120.00238 * 345.00671 * 10 9 8
36 36 H 1.08993 * 109.46971 * 269.99890 * 15 14 11
37 37 H 1.08998 * 109.47119 * 30.00593 * 15 14 11
38 38 H 1.08996 * 109.46769 * 150.00377 * 15 14 11
39 39 H 1.08997 * 109.47518 * 174.90733 * 18 16 14
40 40 H 1.09004 * 109.47390 * 294.90389 * 18 16 14
41 41 H 1.08998 * 109.47541 * 54.90089 * 18 16 14
42 42 H 0.97000 * 119.99849 * 355.27532 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.2741 1.0599 0.0000
4 7 3.6087 0.6342 -0.0006
5 1 4.3907 1.2081 -0.0004
6 6 3.6142 -0.7153 0.0045
7 6 4.8350 -1.5987 0.0109
8 6 2.3272 -1.1330 -0.0006
9 6 1.8600 -2.5657 -0.0004
10 7 1.7083 -3.0301 -1.3816
11 16 1.5707 -4.6493 -1.7003
12 8 2.6174 -5.2897 -0.9836
13 8 1.4053 -4.7688 -3.1066
14 7 0.1529 -5.1646 -1.0172
15 6 0.1411 -5.6570 0.3626
16 6 -1.0895 -5.1282 -1.7926
17 1 -0.8850 -4.7347 -2.7882
18 6 -2.1047 -4.2267 -1.0872
19 6 -1.6505 -6.5220 -1.9082
20 1 -1.1823 -7.3383 -1.3784
21 6 -2.7617 -6.7552 -2.6905
22 7 -3.3090 -7.9508 -2.7158
23 14 -3.4853 -5.3749 -3.7204
24 1 -4.5103 -4.6503 -2.9270
25 1 -2.4066 -4.4330 -4.1136
26 1 -4.1141 -5.9441 -4.9394
27 1 -0.3633 -0.0006 1.0277
28 1 -0.3634 0.8902 -0.5133
29 1 -0.3634 -0.8898 -0.5142
30 1 5.1339 -1.8130 -1.0152
31 1 5.6489 -1.0901 0.5276
32 1 4.6054 -2.5321 0.5249
33 1 0.9014 -2.6352 0.5136
34 1 2.5937 -3.1870 0.5133
35 1 1.6885 -2.3891 -2.1094
36 1 0.3214 -6.7319 0.3663
37 1 0.9221 -5.1555 0.9340
38 1 -0.8292 -5.4498 0.8140
39 1 -2.9951 -4.1269 -1.7079
40 1 -2.3778 -4.6676 -0.1285
41 1 -1.6646 -3.2432 -0.9225
42 1 -2.8919 -8.6853 -2.2389
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001364078049.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:05:09
Heat of formation + Delta-G solvation = -9.276919 kcal
Electronic energy + Delta-G solvation = -25729.510596 eV
Core-core repulsion = 22065.977774 eV
Total energy + Delta-G solvation = -3663.532822 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 316.136 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.59814 -36.77264 -36.38444 -35.41609 -35.29303 -33.61397 -32.53416 -31.51571
-29.88353 -28.42171 -27.51576 -25.78168 -24.96065 -24.58627 -20.72288 -20.42317
-19.73454 -18.79889 -17.67408 -17.54129 -17.30998 -16.65858 -16.01008 -15.31421
-14.84151 -14.45225 -14.08793 -13.77312 -13.61497 -13.52101 -13.41276 -13.22487
-13.05314 -12.69309 -12.55002 -12.48199 -12.16570 -12.10192 -12.05562 -11.73430
-11.60769 -11.54994 -11.53228 -11.26340 -10.86101 -10.67529 -10.43441 -10.02721
-9.73746 -9.46294 -9.35637 -8.98773 -8.72557 -8.47650 -8.12003 -6.42984
-4.10941 1.08532 1.61736 2.43870 2.59619 3.34435 3.46360 3.51645
3.58223 4.07347 4.37052 4.42867 4.46644 4.76555 4.84121 5.04336
5.08094 5.19396 5.25643 5.28654 5.41964 5.50569 5.52647 5.61920
5.78554 5.81180 5.97249 5.99959 6.03689 6.22007 6.29673 6.36338
6.44644 6.53906 6.55913 6.87058 7.02471 7.12657 7.32690 7.46376
7.51734 7.95152 8.37874 8.89216 9.59534 10.95309
Molecular weight = 316.14amu
Principal moments of inertia in cm(-1)
A = 0.019034 B = 0.004440 C = 0.003966
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1470.687188 B = 6304.801575 C = 7057.567112
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 C 0.097 3.903
3 N -0.299 5.299
4 N -0.478 5.478
5 H 0.437 0.563
6 C 0.110 3.890
7 C -0.100 4.100
8 C -0.247 4.247
9 C 0.201 3.799
10 N -1.130 6.130
11 S 2.779 3.221
12 O -0.993 6.993
13 O -0.976 6.976
14 N -0.984 5.984
15 C 0.110 3.890
16 C 0.239 3.761
17 H 0.056 0.944
18 C -0.159 4.159
19 C -0.596 4.596
20 H 0.064 0.936
21 C 0.030 3.970
22 N -0.910 5.910
23 Si 1.048 2.952
24 H -0.282 1.282
25 H -0.275 1.275
26 H -0.287 1.287
27 H 0.079 0.921
28 H 0.073 0.927
29 H 0.085 0.915
30 H 0.085 0.915
31 H 0.071 0.929
32 H 0.093 0.907
33 H 0.072 0.928
34 H 0.079 0.921
35 H 0.412 0.588
36 H 0.049 0.951
37 H 0.050 0.950
38 H 0.072 0.928
39 H 0.051 0.949
40 H 0.056 0.944
41 H 0.032 0.968
42 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.347 16.516 8.321 22.236
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.070 4.070
3 N -0.122 5.122
4 N -0.185 5.185
5 H 0.281 0.719
6 C -0.020 4.020
7 C -0.158 4.158
8 C -0.260 4.260
9 C 0.074 3.926
10 N -0.889 5.889
11 S 2.787 3.213
12 O -0.977 6.977
13 O -0.960 6.960
14 N -0.826 5.826
15 C -0.036 4.036
16 C 0.134 3.866
17 H 0.073 0.927
18 C -0.219 4.219
19 C -0.635 4.635
20 H 0.082 0.918
21 C -0.175 4.175
22 N -0.544 5.544
23 Si 0.877 3.123
24 H -0.209 1.209
25 H -0.201 1.201
26 H -0.214 1.214
27 H 0.098 0.902
28 H 0.092 0.908
29 H 0.103 0.897
30 H 0.103 0.897
31 H 0.090 0.910
32 H 0.111 0.889
33 H 0.090 0.910
34 H 0.097 0.903
35 H 0.245 0.755
36 H 0.068 0.932
37 H 0.069 0.931
38 H 0.090 0.910
39 H 0.070 0.930
40 H 0.075 0.925
41 H 0.051 0.949
42 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 11.757 17.462 6.984 22.179
hybrid contribution 1.400 -0.425 0.993 1.769
sum 13.157 17.036 7.977 22.956
Atomic orbital electron populations
1.20286 0.86360 1.03953 1.03337 1.22303 0.97107 0.89938 0.97647
1.77321 0.86351 1.22241 1.26258 1.46187 1.07438 1.04779 1.60135
0.71891 1.20987 0.97072 0.84906 0.99084 1.20572 0.92574 0.98654
1.04026 1.19659 0.91343 0.95847 1.19145 1.19336 1.00665 0.90064
0.82536 1.56327 1.91021 1.27754 1.13817 1.01983 0.73287 0.72801
0.73194 1.93536 1.55130 1.74058 1.74934 1.93610 1.86505 1.85464
1.30383 1.57475 1.25215 1.76945 1.22944 1.21170 1.01680 0.99242
0.81558 1.19177 0.79899 0.97613 0.89923 0.92680 1.22437 0.99869
0.97744 1.01806 1.22255 1.15755 0.92942 1.32570 0.91772 1.25708
0.94277 1.01340 0.96166 1.70806 1.39297 1.01374 1.42958 0.83981
0.76400 0.75116 0.76795 1.20912 1.20080 1.21401 0.90204 0.90763
0.89664 0.89689 0.90980 0.88857 0.91026 0.90302 0.75480 0.93183
0.93109 0.90980 0.93035 0.92492 0.94946 0.92200
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.77 10.12 36.00 0.36 -0.40 16
2 C 0.10 1.12 7.22 -82.41 -0.59 0.53 16
3 N -0.30 -3.57 12.70 33.67 0.43 -3.15 16
4 N -0.48 -4.46 7.36 33.48 0.25 -4.21 16
5 H 0.44 2.65 8.96 -182.60 -1.64 1.01 16
6 C 0.11 1.06 7.21 -82.26 -0.59 0.46 16
7 C -0.10 -0.71 10.22 36.00 0.37 -0.34 16
8 C -0.25 -2.74 5.50 -105.05 -0.58 -3.32 16
9 C 0.20 2.30 6.18 -5.19 -0.03 2.27 16
10 N -1.13 -15.26 6.05 -11.66 -0.07 -15.33 16
11 S 2.78 51.01 6.09 -107.50 -0.66 50.35 16
12 O -0.99 -19.31 16.68 -57.17 -0.95 -20.26 16
13 O -0.98 -21.75 16.70 -57.17 -0.95 -22.71 16
14 N -0.98 -19.13 3.12 -115.86 -0.36 -19.50 16
15 C 0.11 1.84 9.48 59.85 0.57 2.41 16
16 C 0.24 5.41 2.20 -69.09 -0.15 5.26 16
17 H 0.06 1.33 5.41 -51.93 -0.28 1.05 16
18 C -0.16 -3.09 8.65 37.16 0.32 -2.77 16
19 C -0.60 -16.22 8.77 -34.44 -0.30 -16.52 16
20 H 0.06 1.88 7.74 -52.49 -0.41 1.47 16
21 C 0.03 0.86 5.43 -17.82 -0.10 0.76 16
22 N -0.91 -27.60 13.70 55.43 0.76 -26.84 16
23 Si 1.05 24.98 25.28 -169.99 -4.30 20.69 16
24 H -0.28 -6.21 6.82 56.52 0.39 -5.82 16
25 H -0.27 -6.17 6.35 56.52 0.36 -5.81 16
26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
27 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16
28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
29 H 0.08 0.81 7.92 -51.93 -0.41 0.40 16
30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16
31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
32 H 0.09 0.70 7.14 -51.93 -0.37 0.33 16
33 H 0.07 0.76 7.92 -51.93 -0.41 0.35 16
34 H 0.08 0.87 6.75 -51.93 -0.35 0.52 16
35 H 0.41 5.14 8.64 -34.47 -0.30 4.85 16
36 H 0.05 0.90 8.09 -51.93 -0.42 0.48 16
37 H 0.05 0.68 7.79 -51.93 -0.40 0.28 16
38 H 0.07 1.15 6.53 -51.93 -0.34 0.81 16
39 H 0.05 1.03 4.41 -51.93 -0.23 0.80 16
40 H 0.06 1.07 6.88 -51.93 -0.36 0.71 16
41 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16
42 H 0.27 8.11 8.72 -40.82 -0.36 7.75 16
LS Contribution 352.55 15.07 5.31 5.31
Total: -1.00 -35.52 352.55 -8.52 -44.03
By element:
Atomic # 1 Polarization: 10.52 SS G_CDS: -7.24 Total: 3.28 kcal
Atomic # 6 Polarization: -10.94 SS G_CDS: -0.73 Total: -11.67 kcal
Atomic # 7 Polarization: -70.03 SS G_CDS: 1.00 Total: -69.03 kcal
Atomic # 8 Polarization: -41.06 SS G_CDS: -1.91 Total: -42.97 kcal
Atomic # 14 Polarization: 24.98 SS G_CDS: -4.30 Total: 20.69 kcal
Atomic # 16 Polarization: 51.01 SS G_CDS: -0.66 Total: 50.35 kcal
Total LS contribution 5.31 Total: 5.31 kcal
Total: -35.52 -8.52 -44.03 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001364078049.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.755 kcal
(2) G-P(sol) polarization free energy of solvation -35.516 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.762 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.032 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.277 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds