Wall clock time and date at job start Tue Mar 31 2020 11:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30840 * 125.89745 * 2 1 4 4 N 1.40081 * 108.20651 * 180.02562 * 3 2 1 5 5 H 0.97008 * 126.03602 * 180.02562 * 4 3 2 6 6 C 1.34950 * 107.92720 * 359.75700 * 4 3 2 7 7 C 1.50696 * 126.12974 * 180.23834 * 6 4 3 8 8 C 1.35318 * 107.74337 * 0.39145 * 6 4 3 9 9 C 1.50697 * 126.03830 * 179.87235 * 8 6 4 10 10 N 1.46504 * 109.46947 * 269.71220 * 9 8 6 11 11 S 1.65604 * 119.99687 * 165.00011 * 10 9 8 12 12 O 1.42099 * 106.40020 * 311.46268 * 11 10 9 13 13 O 1.42107 * 106.39868 * 178.54243 * 11 10 9 14 14 N 1.65602 * 107.21736 * 65.00410 * 11 10 9 15 15 C 1.46505 * 119.99670 * 269.99702 * 14 11 10 16 16 C 1.46496 * 120.00030 * 89.99816 * 14 11 10 17 17 H 1.08993 * 109.47272 * 359.97438 * 16 14 11 18 18 C 1.52997 * 109.47161 * 240.00007 * 16 14 11 19 19 C 1.50696 * 109.46880 * 119.99921 * 16 14 11 20 20 H 1.07991 * 120.00403 * 5.37934 * 19 16 14 21 21 C 1.37882 * 119.99857 * 185.37666 * 19 16 14 22 22 N 1.31514 * 120.00102 * 184.89785 * 21 19 16 23 23 Si 1.86804 * 120.00107 * 5.17501 * 21 19 16 24 24 H 1.48493 * 109.47271 * 269.72415 * 23 21 19 25 25 H 1.48501 * 109.46725 * 29.72337 * 23 21 19 26 26 H 1.48499 * 109.47261 * 149.72095 * 23 21 19 27 27 H 1.09003 * 109.46730 * 269.96829 * 1 2 3 28 28 H 1.08998 * 109.47708 * 29.97013 * 1 2 3 29 29 H 1.09002 * 109.47255 * 149.97653 * 1 2 3 30 30 H 1.08995 * 109.47473 * 270.18125 * 7 6 4 31 31 H 1.09002 * 109.47017 * 30.17936 * 7 6 4 32 32 H 1.08996 * 109.47043 * 150.17542 * 7 6 4 33 33 H 1.08999 * 109.46899 * 149.71999 * 9 8 6 34 34 H 1.08998 * 109.47166 * 29.71505 * 9 8 6 35 35 H 0.97000 * 120.00238 * 345.00671 * 10 9 8 36 36 H 1.08993 * 109.46971 * 269.99890 * 15 14 11 37 37 H 1.08998 * 109.47119 * 30.00593 * 15 14 11 38 38 H 1.08996 * 109.46769 * 150.00377 * 15 14 11 39 39 H 1.08997 * 109.47518 * 174.90733 * 18 16 14 40 40 H 1.09004 * 109.47390 * 294.90389 * 18 16 14 41 41 H 1.08998 * 109.47541 * 54.90089 * 18 16 14 42 42 H 0.97000 * 119.99849 * 355.27532 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0006 5 1 4.3907 1.2081 -0.0004 6 6 3.6142 -0.7153 0.0045 7 6 4.8350 -1.5987 0.0109 8 6 2.3272 -1.1330 -0.0006 9 6 1.8600 -2.5657 -0.0004 10 7 1.7083 -3.0301 -1.3816 11 16 1.5707 -4.6493 -1.7003 12 8 2.6174 -5.2897 -0.9836 13 8 1.4053 -4.7688 -3.1066 14 7 0.1529 -5.1646 -1.0172 15 6 0.1411 -5.6570 0.3626 16 6 -1.0895 -5.1282 -1.7926 17 1 -0.8850 -4.7347 -2.7882 18 6 -2.1047 -4.2267 -1.0872 19 6 -1.6505 -6.5220 -1.9082 20 1 -1.1823 -7.3383 -1.3784 21 6 -2.7617 -6.7552 -2.6905 22 7 -3.3090 -7.9508 -2.7158 23 14 -3.4853 -5.3749 -3.7204 24 1 -4.5103 -4.6503 -2.9270 25 1 -2.4066 -4.4330 -4.1136 26 1 -4.1141 -5.9441 -4.9394 27 1 -0.3633 -0.0006 1.0277 28 1 -0.3634 0.8902 -0.5133 29 1 -0.3634 -0.8898 -0.5142 30 1 5.1339 -1.8130 -1.0152 31 1 5.6489 -1.0901 0.5276 32 1 4.6054 -2.5321 0.5249 33 1 0.9014 -2.6352 0.5136 34 1 2.5937 -3.1870 0.5133 35 1 1.6885 -2.3891 -2.1094 36 1 0.3214 -6.7319 0.3663 37 1 0.9221 -5.1555 0.9340 38 1 -0.8292 -5.4498 0.8140 39 1 -2.9951 -4.1269 -1.7079 40 1 -2.3778 -4.6676 -0.1285 41 1 -1.6646 -3.2432 -0.9225 42 1 -2.8919 -8.6853 -2.2389 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364078049.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:08 Heat of formation + Delta-G solvation = -38.719153 kcal Electronic energy + Delta-G solvation = -25730.787307 eV Core-core repulsion = 22065.977774 eV Total energy + Delta-G solvation = -3664.809533 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.35602 -38.34540 -38.01571 -36.87271 -36.43571 -34.56840 -34.32670 -32.33065 -31.58367 -29.15582 -28.24114 -27.23155 -26.54447 -25.81931 -22.44764 -21.19176 -20.56809 -20.21120 -19.55824 -18.78897 -18.53648 -18.03597 -17.27114 -16.44385 -16.00286 -15.71758 -15.24918 -15.22661 -14.94224 -14.66137 -14.46951 -14.25320 -14.11581 -13.94998 -13.59944 -13.51761 -13.37936 -13.29068 -13.24249 -13.19362 -13.12453 -12.94018 -12.87090 -12.66465 -12.44784 -12.08959 -11.74601 -11.56009 -11.46076 -10.94371 -10.59774 -10.42356 -10.21435 -9.83233 -9.49489 -8.64257 -6.34332 -0.34830 0.85880 1.45613 1.58589 1.59825 1.72652 1.93966 2.15908 2.51135 2.69585 3.14810 3.44022 3.66984 3.71297 3.99881 4.14855 4.21658 4.29078 4.52521 4.57679 4.65990 4.69220 4.71614 4.80174 4.84096 4.86708 4.92512 5.01223 5.07091 5.10436 5.14682 5.17562 5.24937 5.34156 5.64517 5.69558 5.81145 6.01533 6.08797 6.18265 6.40338 6.64481 6.71282 7.45141 8.70825 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.019034 B = 0.004440 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.687188 B = 6304.801575 C = 7057.567112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.090 3.910 3 N -0.329 5.329 4 N -0.470 5.470 5 H 0.450 0.550 6 C 0.118 3.882 7 C -0.102 4.102 8 C -0.266 4.266 9 C 0.197 3.803 10 N -1.110 6.110 11 S 2.796 3.204 12 O -1.006 7.006 13 O -1.019 7.019 14 N -0.992 5.992 15 C 0.104 3.896 16 C 0.238 3.762 17 H 0.045 0.955 18 C -0.154 4.154 19 C -0.594 4.594 20 H 0.026 0.974 21 C -0.024 4.024 22 N -0.946 5.946 23 Si 1.079 2.921 24 H -0.247 1.247 25 H -0.253 1.253 26 H -0.297 1.297 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.420 0.580 36 H 0.026 0.974 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.098 19.478 9.314 25.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.077 4.077 3 N -0.152 5.152 4 N -0.179 5.179 5 H 0.296 0.704 6 C -0.014 4.014 7 C -0.160 4.160 8 C -0.280 4.280 9 C 0.071 3.929 10 N -0.873 5.873 11 S 2.805 3.195 12 O -0.990 6.990 13 O -1.003 7.003 14 N -0.833 5.833 15 C -0.041 4.041 16 C 0.132 3.868 17 H 0.062 0.938 18 C -0.213 4.213 19 C -0.634 4.634 20 H 0.045 0.955 21 C -0.221 4.221 22 N -0.583 5.583 23 Si 0.901 3.099 24 H -0.172 1.172 25 H -0.177 1.177 26 H -0.224 1.224 27 H 0.110 0.890 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.255 0.745 36 H 0.044 0.956 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.535 20.440 8.013 25.281 hybrid contribution 1.360 -1.346 0.769 2.062 sum 13.895 19.094 8.782 25.195 Atomic orbital electron populations 1.20362 0.85347 1.04124 1.04198 1.22631 0.98000 0.89916 0.97194 1.77277 0.87438 1.23021 1.27486 1.46223 1.07314 1.05022 1.59342 0.70361 1.21359 0.97574 0.85162 0.97292 1.20689 0.92380 0.98353 1.04581 1.19660 0.91967 0.95389 1.20934 1.19543 1.01840 0.90509 0.80980 1.55879 1.90432 1.25693 1.15345 1.01253 0.72729 0.73684 0.71849 1.93515 1.55353 1.75201 1.74890 1.93547 1.86926 1.86605 1.33220 1.57405 1.24319 1.77937 1.23613 1.21347 1.03684 0.98323 0.80790 1.18972 0.81834 0.95242 0.90728 0.93779 1.22301 0.98633 0.99138 1.01231 1.22526 1.15140 0.94718 1.30982 0.95542 1.27100 0.95293 1.02536 0.97175 1.70937 1.40520 1.02099 1.44740 0.83648 0.77383 0.73398 0.75491 1.17185 1.17737 1.22386 0.88978 0.90578 0.89454 0.89359 0.88390 0.89061 0.89531 0.89655 0.74501 0.95551 0.89300 0.89992 0.93445 0.92191 0.90592 0.94021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.32 10.12 71.23 0.72 -0.60 16 2 C 0.09 1.83 7.22 43.10 0.31 2.14 16 3 N -0.33 -7.16 12.70 -47.39 -0.60 -7.76 16 4 N -0.47 -7.60 7.36 -48.00 -0.35 -7.95 16 5 H 0.45 4.34 8.96 -213.32 -1.91 2.43 16 6 C 0.12 1.93 7.21 41.40 0.30 2.23 16 7 C -0.10 -1.14 10.22 71.23 0.73 -0.41 16 8 C -0.27 -5.15 5.50 -20.14 -0.11 -5.26 16 9 C 0.20 3.89 6.18 85.63 0.53 4.42 16 10 N -1.11 -27.08 6.05 -190.79 -1.15 -28.23 16 11 S 2.80 98.73 6.09 -56.49 -0.34 98.38 16 12 O -1.01 -37.72 16.68 -128.00 -2.14 -39.85 16 13 O -1.02 -44.95 16.70 -128.00 -2.14 -47.09 16 14 N -0.99 -37.23 3.12 -520.48 -1.62 -38.86 16 15 C 0.10 3.34 9.48 127.77 1.21 4.55 16 16 C 0.24 10.49 2.20 44.24 0.10 10.59 16 17 H 0.04 2.07 5.41 -2.39 -0.01 2.06 16 18 C -0.15 -5.48 8.65 71.98 0.62 -4.86 16 19 C -0.59 -32.90 8.77 25.60 0.22 -32.68 16 20 H 0.03 1.62 7.74 -2.92 -0.02 1.59 16 21 C -0.02 -1.35 5.43 84.66 0.46 -0.89 16 22 N -0.95 -59.30 13.70 21.45 0.29 -59.00 16 23 Si 1.08 49.29 25.28 68.60 1.73 51.03 16 24 H -0.25 -9.88 6.82 99.48 0.68 -9.20 16 25 H -0.25 -10.57 6.35 99.48 0.63 -9.94 16 26 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 27 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 1.35 7.92 -2.39 -0.02 1.33 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 1.10 7.14 -2.39 -0.02 1.09 16 33 H 0.09 1.48 7.92 -2.39 -0.02 1.46 16 34 H 0.09 1.60 6.75 -2.39 -0.02 1.58 16 35 H 0.42 9.40 8.64 -96.74 -0.84 8.57 16 36 H 0.03 0.95 8.09 -2.39 -0.02 0.93 16 37 H 0.09 2.14 7.79 -2.39 -0.02 2.12 16 38 H 0.08 2.45 6.53 -2.39 -0.02 2.43 16 39 H 0.05 1.73 4.41 -2.39 -0.01 1.72 16 40 H 0.06 2.08 6.88 -2.38 -0.02 2.06 16 41 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.25 16.00 8.72 -92.71 -0.81 15.19 16 Total: -1.00 -78.92 352.55 -3.05 -81.98 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -1.82 Total: 18.12 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 5.09 Total: -20.77 kcal Atomic # 7 Polarization: -138.36 SS G_CDS: -3.44 Total: -141.80 kcal Atomic # 8 Polarization: -82.67 SS G_CDS: -4.27 Total: -86.94 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 1.73 Total: 51.03 kcal Atomic # 16 Polarization: 98.73 SS G_CDS: -0.34 Total: 98.38 kcal Total: -78.92 -3.05 -81.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364078049.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.259 kcal (2) G-P(sol) polarization free energy of solvation -78.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds