Wall clock time and date at job start Tue Mar 31 2020 11:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.47217 * 2 1 4 4 N 1.30509 * 125.64548 * 305.02111 * 3 2 1 5 5 C 1.34128 * 109.25089 * 179.73463 * 4 3 2 6 6 C 1.34666 * 108.02317 * 0.40151 * 5 4 3 7 7 C 1.50700 * 126.59171 * 179.87268 * 6 5 4 8 8 N 1.46500 * 109.47412 * 264.68567 * 7 6 5 9 9 S 1.65593 * 119.99925 * 164.99847 * 8 7 6 10 10 O 1.42096 * 106.40460 * 311.46213 * 9 8 7 11 11 O 1.42108 * 106.40218 * 178.54273 * 9 8 7 12 12 N 1.65606 * 107.21842 * 65.00539 * 9 8 7 13 13 C 1.46497 * 119.99739 * 269.99739 * 12 9 8 14 14 C 1.46497 * 120.00188 * 89.99816 * 12 9 8 15 15 H 1.09007 * 109.47078 * 359.97438 * 14 12 9 16 16 C 1.53000 * 109.47021 * 240.00233 * 14 12 9 17 17 C 1.50694 * 109.47115 * 120.00014 * 14 12 9 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 12 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 N 1.35040 * 125.65336 * 125.00191 * 3 2 1 26 26 H 0.97000 * 126.39534 * 0.02562 * 25 3 2 27 27 H 1.09004 * 109.47140 * 300.00061 * 1 2 3 28 28 H 1.09004 * 109.47573 * 60.00156 * 1 2 3 29 29 H 1.09000 * 109.47343 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47140 * 239.99939 * 2 1 3 31 31 H 1.08995 * 109.47302 * 119.99778 * 2 1 3 32 32 H 1.08001 * 125.98920 * 180.25160 * 5 4 3 33 33 H 1.09006 * 109.46596 * 144.68478 * 7 6 5 34 34 H 1.09004 * 109.47086 * 24.68779 * 7 6 5 35 35 H 0.97005 * 119.99538 * 345.00608 * 8 7 6 36 36 H 1.09001 * 109.46905 * 270.00036 * 13 12 9 37 37 H 1.09005 * 109.47144 * 29.99977 * 13 12 9 38 38 H 1.08993 * 109.47302 * 150.00165 * 13 12 9 39 39 H 1.08998 * 109.47089 * 59.99825 * 16 14 12 40 40 H 1.08995 * 109.47131 * 179.97438 * 16 14 12 41 41 H 1.09002 * 109.47106 * 299.99878 * 16 14 12 42 42 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.7120 2.3408 -0.8685 5 6 2.3413 3.4831 -0.5551 6 6 3.0864 3.2603 0.5443 7 6 3.9646 4.2597 1.2520 8 7 5.3425 4.1245 0.7732 9 16 6.4485 5.3166 1.0859 10 8 5.8273 6.5438 0.7293 11 8 7.6798 4.8779 0.5283 12 7 6.6684 5.3631 2.7266 13 6 5.8253 6.2293 3.5543 14 6 7.7059 4.5381 3.3503 15 1 8.2256 3.9656 2.5819 16 6 7.0606 3.5781 4.3518 17 6 8.6898 5.4259 4.0677 18 1 8.5560 6.4975 4.0596 19 6 9.7616 4.8700 4.7337 20 7 9.9249 3.5651 4.7433 21 14 10.9816 5.9706 5.6224 22 1 12.0751 6.3500 4.6920 23 1 10.2888 7.1951 6.0977 24 1 11.5509 5.2414 6.7841 25 7 2.8881 1.9531 0.8988 26 1 3.2878 1.4947 1.6545 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.2657 4.4172 -1.0920 33 1 3.9332 4.0747 2.3258 34 1 3.6059 5.2683 1.0465 35 1 5.6069 3.3366 0.2728 36 1 6.2926 7.2097 3.6472 37 1 4.8459 6.3363 3.0879 38 1 5.7102 5.7865 4.5436 39 1 6.3489 2.9361 3.8329 40 1 7.8325 2.9640 4.8155 41 1 6.5406 4.1503 5.1202 42 1 10.6791 3.1741 5.2115 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364967075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:51 Heat of formation + Delta-G solvation = -26.301974 kcal Electronic energy + Delta-G solvation = -24968.226185 eV Core-core repulsion = 21303.955101 eV Total energy + Delta-G solvation = -3664.271084 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -42.29998 -36.74853 -36.25671 -35.53982 -35.27435 -33.80027 -32.63403 -32.59794 -29.37121 -29.16380 -25.72884 -25.52570 -25.17713 -23.77916 -21.31452 -20.87029 -20.44771 -18.89382 -17.90670 -17.29932 -16.84470 -16.41544 -15.96569 -15.38105 -15.09220 -14.74147 -14.45484 -14.32924 -13.65029 -13.54598 -13.46900 -13.22897 -13.17679 -12.85916 -12.59959 -12.08572 -11.87374 -11.79692 -11.61500 -11.51728 -11.47314 -11.41917 -11.28372 -11.02117 -10.86553 -10.53983 -10.33221 -10.23142 -10.16961 -10.06495 -9.44793 -9.30673 -8.51282 -8.49344 -8.04154 -6.12323 -4.18712 1.07344 1.82412 2.85203 2.93075 3.26322 3.32947 3.35577 3.51360 4.06674 4.16336 4.36592 4.54662 4.66409 4.91381 4.92826 4.97475 5.07719 5.19598 5.27647 5.38642 5.46800 5.50888 5.51381 5.72943 5.83330 5.93766 6.05636 6.09028 6.30642 6.54935 6.57430 6.66301 6.70733 6.92901 7.03091 7.16439 7.40421 7.57187 7.72895 7.89339 7.97816 8.21890 8.83787 9.47439 10.93491 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.021891 B = 0.003341 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.773646 B = 8377.692111 C = 9068.395962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.037 4.037 3 C 0.213 3.787 4 N -0.488 5.488 5 C -0.002 4.002 6 C -0.033 4.033 7 C 0.199 3.801 8 N -1.132 6.132 9 S 2.779 3.221 10 O -0.993 6.993 11 O -0.971 6.971 12 N -0.990 5.990 13 C 0.108 3.892 14 C 0.268 3.732 15 H 0.059 0.941 16 C -0.147 4.147 17 C -0.520 4.520 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.891 5.891 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.274 1.274 24 H -0.286 1.286 25 N -0.558 5.558 26 H 0.420 0.580 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.173 0.827 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.413 0.587 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.008 0.992 40 H 0.093 0.907 41 H 0.034 0.966 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.686 -6.118 -4.434 18.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 C -0.051 4.051 4 N -0.208 5.208 5 C -0.152 4.152 6 C -0.150 4.150 7 C 0.072 3.928 8 N -0.891 5.891 9 S 2.788 3.212 10 O -0.976 6.976 11 O -0.955 6.955 12 N -0.833 5.833 13 C -0.039 4.039 14 C 0.165 3.835 15 H 0.076 0.924 16 C -0.207 4.207 17 C -0.559 4.559 18 H 0.081 0.919 19 C -0.139 4.139 20 N -0.530 5.530 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.199 1.199 24 H -0.212 1.212 25 N -0.162 5.162 26 H 0.258 0.742 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.190 0.810 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.245 0.755 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.027 0.973 40 H 0.111 0.889 41 H 0.053 0.947 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.731 -5.583 -5.597 18.505 hybrid contribution 1.465 -0.127 1.716 2.260 sum -15.266 -5.711 -3.882 16.755 Atomic orbital electron populations 1.21673 0.93395 1.01936 1.03065 1.19961 0.97153 0.86990 1.03535 1.23294 0.94993 0.97615 0.89242 1.70234 1.25252 0.99749 1.25562 1.22230 0.98667 0.97892 0.96432 1.21146 1.06232 0.85875 1.01740 1.19489 0.79505 0.97050 0.96800 1.56399 1.21236 1.40163 1.71278 1.01996 0.72619 0.73148 0.73428 1.93543 1.78071 1.43181 1.82846 1.93624 1.41940 1.82352 1.77622 1.57713 1.45821 1.55016 1.24760 1.21181 0.91838 0.94437 0.96434 1.18727 0.83312 0.88576 0.92860 0.92362 1.22119 0.99756 0.99212 0.99568 1.21333 1.08455 0.93620 1.32534 0.91887 1.24914 0.97584 0.95160 0.96250 1.69853 1.30218 1.09704 1.43230 0.86486 0.81299 0.80444 0.79119 1.20521 1.19852 1.21188 1.43188 1.37020 1.10415 1.25538 0.74164 0.92724 0.91275 0.91938 0.89178 0.90440 0.80995 0.90997 0.88181 0.75457 0.93089 0.93349 0.90962 0.97328 0.88861 0.94716 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.87 37.16 0.37 -0.59 16 2 C -0.04 -0.26 6.56 -27.88 -0.18 -0.45 16 3 C 0.21 2.22 7.43 -155.41 -1.16 1.06 16 4 N -0.49 -6.26 11.21 -10.81 -0.12 -6.38 16 5 C 0.00 -0.03 11.79 -17.81 -0.21 -0.24 16 6 C -0.03 -0.38 6.63 -81.60 -0.54 -0.92 16 7 C 0.20 2.29 6.80 -5.19 -0.04 2.25 16 8 N -1.13 -15.79 6.05 -11.65 -0.07 -15.86 16 9 S 2.78 51.97 6.09 -107.50 -0.66 51.31 16 10 O -0.99 -19.70 16.68 -57.17 -0.95 -20.65 16 11 O -0.97 -22.16 16.70 -57.17 -0.95 -23.12 16 12 N -0.99 -19.42 3.12 -115.86 -0.36 -19.78 16 13 C 0.11 1.79 9.53 59.85 0.57 2.36 16 14 C 0.27 6.31 2.62 -69.09 -0.18 6.12 16 15 H 0.06 1.53 6.91 -51.92 -0.36 1.17 16 16 C -0.15 -3.15 8.95 37.16 0.33 -2.81 16 17 C -0.52 -13.69 8.37 -34.44 -0.29 -13.98 16 18 H 0.06 1.66 7.65 -52.49 -0.40 1.26 16 19 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 20 N -0.89 -24.33 11.32 55.43 0.63 -23.70 16 21 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 25 N -0.56 -5.41 6.15 -6.54 -0.04 -5.45 16 26 H 0.42 3.09 8.96 -40.82 -0.37 2.72 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.17 1.85 8.06 -52.49 -0.42 1.42 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 1.10 7.75 -51.93 -0.40 0.70 16 35 H 0.41 5.39 8.64 -34.47 -0.30 5.09 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.65 7.79 -51.93 -0.40 0.24 16 38 H 0.07 1.15 6.43 -51.93 -0.33 0.82 16 39 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 40 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 41 H 0.03 0.70 6.66 -51.93 -0.35 0.35 16 42 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 360.42 15.07 5.43 5.43 Total: -1.00 -33.54 360.42 -9.70 -43.24 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.17 Total: 4.72 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -1.42 Total: -5.59 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: 0.03 Total: -71.18 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -1.91 Total: -43.77 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 51.97 SS G_CDS: -0.66 Total: 51.31 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.54 -9.70 -43.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364967075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.942 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds