Wall clock time and date at job start Tue Mar 31 2020 11:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.47217 * 2 1 4 4 N 1.30509 * 125.64548 * 305.02111 * 3 2 1 5 5 C 1.34128 * 109.25089 * 179.73463 * 4 3 2 6 6 C 1.34666 * 108.02317 * 0.40151 * 5 4 3 7 7 C 1.50700 * 126.59171 * 179.87268 * 6 5 4 8 8 N 1.46500 * 109.47412 * 264.68567 * 7 6 5 9 9 S 1.65593 * 119.99925 * 164.99847 * 8 7 6 10 10 O 1.42096 * 106.40460 * 311.46213 * 9 8 7 11 11 O 1.42108 * 106.40218 * 178.54273 * 9 8 7 12 12 N 1.65606 * 107.21842 * 65.00539 * 9 8 7 13 13 C 1.46497 * 119.99739 * 269.99739 * 12 9 8 14 14 C 1.46497 * 120.00188 * 89.99816 * 12 9 8 15 15 H 1.09007 * 109.47078 * 359.97438 * 14 12 9 16 16 C 1.53000 * 109.47021 * 240.00233 * 14 12 9 17 17 C 1.50694 * 109.47115 * 120.00014 * 14 12 9 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 12 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 N 1.35040 * 125.65336 * 125.00191 * 3 2 1 26 26 H 0.97000 * 126.39534 * 0.02562 * 25 3 2 27 27 H 1.09004 * 109.47140 * 300.00061 * 1 2 3 28 28 H 1.09004 * 109.47573 * 60.00156 * 1 2 3 29 29 H 1.09000 * 109.47343 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47140 * 239.99939 * 2 1 3 31 31 H 1.08995 * 109.47302 * 119.99778 * 2 1 3 32 32 H 1.08001 * 125.98920 * 180.25160 * 5 4 3 33 33 H 1.09006 * 109.46596 * 144.68478 * 7 6 5 34 34 H 1.09004 * 109.47086 * 24.68779 * 7 6 5 35 35 H 0.97005 * 119.99538 * 345.00608 * 8 7 6 36 36 H 1.09001 * 109.46905 * 270.00036 * 13 12 9 37 37 H 1.09005 * 109.47144 * 29.99977 * 13 12 9 38 38 H 1.08993 * 109.47302 * 150.00165 * 13 12 9 39 39 H 1.08998 * 109.47089 * 59.99825 * 16 14 12 40 40 H 1.08995 * 109.47131 * 179.97438 * 16 14 12 41 41 H 1.09002 * 109.47106 * 299.99878 * 16 14 12 42 42 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.7120 2.3408 -0.8685 5 6 2.3413 3.4831 -0.5551 6 6 3.0864 3.2603 0.5443 7 6 3.9646 4.2597 1.2520 8 7 5.3425 4.1245 0.7732 9 16 6.4485 5.3166 1.0859 10 8 5.8273 6.5438 0.7293 11 8 7.6798 4.8779 0.5283 12 7 6.6684 5.3631 2.7266 13 6 5.8253 6.2293 3.5543 14 6 7.7059 4.5381 3.3503 15 1 8.2256 3.9656 2.5819 16 6 7.0606 3.5781 4.3518 17 6 8.6898 5.4259 4.0677 18 1 8.5560 6.4975 4.0596 19 6 9.7616 4.8700 4.7337 20 7 9.9249 3.5651 4.7433 21 14 10.9816 5.9706 5.6224 22 1 12.0751 6.3500 4.6920 23 1 10.2888 7.1951 6.0977 24 1 11.5509 5.2414 6.7841 25 7 2.8881 1.9531 0.8988 26 1 3.2878 1.4947 1.6545 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.2657 4.4172 -1.0920 33 1 3.9332 4.0747 2.3258 34 1 3.6059 5.2683 1.0465 35 1 5.6069 3.3366 0.2728 36 1 6.2926 7.2097 3.6472 37 1 4.8459 6.3363 3.0879 38 1 5.7102 5.7865 4.5436 39 1 6.3489 2.9361 3.8329 40 1 7.8325 2.9640 4.8155 41 1 6.5406 4.1503 5.1202 42 1 10.6791 3.1741 5.2115 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364967075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:51 Heat of formation + Delta-G solvation = -51.686540 kcal Electronic energy + Delta-G solvation = -24969.326942 eV Core-core repulsion = 21303.955101 eV Total energy + Delta-G solvation = -3665.371841 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.12305 -38.34944 -37.90541 -36.89352 -36.58832 -34.53241 -34.45217 -33.44707 -30.90983 -30.25414 -27.28264 -27.00132 -26.41005 -24.47776 -22.61698 -22.13470 -21.25202 -20.30916 -18.96759 -18.70166 -18.53097 -17.92728 -17.29638 -16.77189 -16.25245 -15.92275 -15.51007 -15.20308 -15.12681 -14.79475 -14.65313 -14.34561 -14.27155 -14.09981 -13.74443 -13.40384 -13.31910 -13.17691 -13.14209 -12.98704 -12.87206 -12.80427 -12.58857 -12.40229 -12.22391 -12.13437 -12.01240 -11.88666 -11.17724 -11.09849 -11.01558 -10.54516 -10.48561 -9.69298 -9.33240 -8.12417 -6.25176 -0.38383 0.94818 1.41705 1.44468 1.52735 1.99001 2.10363 2.18975 2.43391 2.65605 3.16450 3.39292 3.49455 3.75004 4.01784 4.06776 4.19935 4.35071 4.39925 4.42703 4.67653 4.70188 4.73988 4.79358 4.85648 4.99402 5.03977 5.06169 5.14969 5.15922 5.21971 5.24002 5.40943 5.62157 5.69568 5.73290 5.88251 5.97566 6.17031 6.31274 6.46090 6.82669 7.06860 7.43872 8.91554 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.021891 B = 0.003341 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.773646 B = 8377.692111 C = 9068.395962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.038 4.038 3 C 0.216 3.784 4 N -0.522 5.522 5 C -0.020 4.020 6 C -0.035 4.035 7 C 0.195 3.805 8 N -1.118 6.118 9 S 2.799 3.201 10 O -1.005 7.005 11 O -1.018 7.018 12 N -0.995 5.995 13 C 0.100 3.900 14 C 0.273 3.727 15 H 0.024 0.976 16 C -0.134 4.134 17 C -0.538 4.538 18 H 0.056 0.944 19 C 0.018 3.982 20 N -0.913 5.913 21 Si 0.952 3.048 22 H -0.284 1.284 23 H -0.267 1.267 24 H -0.279 1.279 25 N -0.551 5.551 26 H 0.432 0.568 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.178 0.822 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.419 0.581 36 H 0.040 0.960 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.092 -6.669 -3.571 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 C -0.049 4.049 4 N -0.243 5.243 5 C -0.170 4.170 6 C -0.152 4.152 7 C 0.069 3.931 8 N -0.880 5.880 9 S 2.808 3.192 10 O -0.988 6.988 11 O -1.002 7.002 12 N -0.837 5.837 13 C -0.046 4.046 14 C 0.168 3.832 15 H 0.042 0.958 16 C -0.194 4.194 17 C -0.577 4.577 18 H 0.074 0.926 19 C -0.182 4.182 20 N -0.553 5.553 21 Si 0.778 3.222 22 H -0.210 1.210 23 H -0.191 1.191 24 H -0.204 1.204 25 N -0.155 5.155 26 H 0.273 0.727 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.195 0.805 33 H 0.110 0.890 34 H 0.125 0.875 35 H 0.253 0.747 36 H 0.058 0.942 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.145 -6.124 -4.715 19.722 hybrid contribution 1.800 0.016 1.374 2.264 sum -16.345 -6.107 -3.341 17.766 Atomic orbital electron populations 1.21636 0.93161 1.02944 1.01935 1.20159 0.97270 0.85209 1.05074 1.23923 0.94137 0.98456 0.88399 1.70232 1.26524 1.00508 1.27011 1.22491 0.99165 0.98301 0.97026 1.21000 1.06145 0.86482 1.01614 1.19711 0.77729 0.97729 0.97901 1.55956 1.21598 1.39359 1.71082 1.01183 0.72038 0.73176 0.72830 1.93522 1.78075 1.44339 1.82882 1.93558 1.45019 1.83101 1.78536 1.57560 1.45751 1.55286 1.25101 1.21413 0.92829 0.93374 0.96970 1.18399 0.83978 0.88675 0.92111 0.95809 1.21902 0.99415 0.98792 0.99281 1.21675 1.09556 0.93754 1.32757 0.92595 1.25604 0.99145 0.96308 0.97103 1.69964 1.30672 1.10799 1.43829 0.85646 0.79175 0.79225 0.78125 1.21031 1.19112 1.20439 1.43176 1.36697 1.09894 1.25755 0.72723 0.93148 0.93077 0.89864 0.88584 0.87892 0.80497 0.88964 0.87461 0.74671 0.94161 0.89745 0.90133 0.94263 0.91698 0.93626 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.87 71.98 0.71 -0.89 16 2 C -0.04 -0.45 6.56 29.85 0.20 -0.25 16 3 C 0.22 4.10 7.43 138.13 1.03 5.13 16 4 N -0.52 -12.89 11.21 -188.13 -2.11 -15.00 16 5 C -0.02 -0.47 11.79 83.52 0.98 0.51 16 6 C -0.04 -0.72 6.63 40.95 0.27 -0.45 16 7 C 0.20 4.00 6.80 85.63 0.58 4.59 16 8 N -1.12 -29.37 6.05 -190.78 -1.15 -30.53 16 9 S 2.80 102.70 6.09 -56.49 -0.34 102.36 16 10 O -1.01 -38.71 16.68 -128.00 -2.14 -40.84 16 11 O -1.02 -47.15 16.70 -128.00 -2.14 -49.28 16 12 N -0.99 -37.99 3.12 -520.46 -1.62 -39.61 16 13 C 0.10 3.11 9.53 127.77 1.22 4.33 16 14 C 0.27 12.78 2.62 44.24 0.12 12.89 16 15 H 0.02 1.29 6.91 -2.38 -0.02 1.27 16 16 C -0.13 -5.58 8.95 71.98 0.64 -4.93 16 17 C -0.54 -28.41 8.37 25.60 0.21 -28.20 16 18 H 0.06 2.95 7.65 -2.91 -0.02 2.93 16 19 C 0.02 0.97 5.30 84.66 0.45 1.42 16 20 N -0.91 -50.20 11.32 21.45 0.24 -49.96 16 21 Si 0.95 42.67 29.54 68.60 2.03 44.69 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 25 N -0.55 -9.39 6.15 -174.60 -1.07 -10.47 16 26 H 0.43 5.09 8.96 -92.71 -0.83 4.26 16 27 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.18 3.70 8.06 -2.91 -0.02 3.68 16 33 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.11 2.09 7.75 -2.38 -0.02 2.07 16 35 H 0.42 10.36 8.64 -96.74 -0.84 9.53 16 36 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 2.00 7.79 -2.38 -0.02 1.98 16 38 H 0.08 2.37 6.43 -2.39 -0.02 2.36 16 39 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 41 H 0.04 1.75 6.66 -2.39 -0.02 1.73 16 42 H 0.26 13.83 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -72.56 360.42 -2.51 -75.08 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -0.62 Total: 19.41 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 6.41 Total: -5.85 kcal Atomic # 7 Polarization: -139.84 SS G_CDS: -5.72 Total: -145.56 kcal Atomic # 8 Polarization: -85.85 SS G_CDS: -4.27 Total: -90.13 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 102.70 SS G_CDS: -0.34 Total: 102.36 kcal Total: -72.56 -2.51 -75.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364967075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.392 kcal (2) G-P(sol) polarization free energy of solvation -72.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds