Wall clock time and date at job start Tue Mar 31 2020 11:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46731 * 2 1 4 4 N 1.30492 * 125.65031 * 305.02219 * 3 2 1 5 5 C 1.34126 * 109.25632 * 179.73744 * 4 3 2 6 6 C 1.34673 * 108.02024 * 0.39768 * 5 4 3 7 7 C 1.50694 * 126.59144 * 179.87176 * 6 5 4 8 8 N 1.46496 * 109.47433 * 264.68951 * 7 6 5 9 9 S 1.65599 * 120.00176 * 164.99923 * 8 7 6 10 10 O 1.42096 * 106.40271 * 311.46484 * 9 8 7 11 11 O 1.42104 * 106.40293 * 178.54053 * 9 8 7 12 12 N 1.65603 * 107.21785 * 65.00401 * 9 8 7 13 13 C 1.46500 * 120.00003 * 270.00182 * 12 9 8 14 14 C 1.46496 * 120.00062 * 89.99674 * 12 9 8 15 15 H 1.09001 * 109.47464 * 0.02562 * 14 12 9 16 16 C 1.53006 * 109.46995 * 120.00453 * 14 12 9 17 17 C 1.50699 * 109.47248 * 240.00138 * 14 12 9 18 18 H 1.07999 * 120.00019 * 0.02562 * 17 14 12 19 19 C 1.37879 * 119.99908 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99546 * 180.02562 * 19 17 14 21 21 Si 1.86797 * 120.00061 * 359.97438 * 19 17 14 22 22 H 1.48496 * 109.47023 * 90.00536 * 21 19 17 23 23 H 1.48503 * 109.47041 * 210.00292 * 21 19 17 24 24 H 1.48500 * 109.47388 * 329.99951 * 21 19 17 25 25 N 1.35044 * 125.64680 * 125.00547 * 3 2 1 26 26 H 0.96997 * 126.39603 * 0.02562 * 25 3 2 27 27 H 1.09003 * 109.47342 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47622 * 299.99726 * 1 2 3 29 29 H 1.08994 * 109.47472 * 59.99981 * 1 2 3 30 30 H 1.08998 * 109.46885 * 239.99936 * 2 1 3 31 31 H 1.09003 * 109.47195 * 119.99990 * 2 1 3 32 32 H 1.08002 * 125.99446 * 180.25429 * 5 4 3 33 33 H 1.08999 * 109.46964 * 144.68814 * 7 6 5 34 34 H 1.09004 * 109.47039 * 24.69307 * 7 6 5 35 35 H 0.97005 * 120.00284 * 345.00455 * 8 7 6 36 36 H 1.08998 * 109.46877 * 269.99776 * 13 12 9 37 37 H 1.09004 * 109.46845 * 29.99796 * 13 12 9 38 38 H 1.08994 * 109.47249 * 150.00027 * 13 12 9 39 39 H 1.09001 * 109.47002 * 299.99701 * 16 14 12 40 40 H 1.08993 * 109.46955 * 60.00138 * 16 14 12 41 41 H 1.09000 * 109.47050 * 179.97438 * 16 14 12 42 42 H 0.97005 * 119.99945 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 1.7120 2.3408 -0.8684 5 6 2.3411 3.4831 -0.5550 6 6 3.0862 3.2603 0.5444 7 6 3.9644 4.2597 1.2521 8 7 5.3423 4.1245 0.7733 9 16 6.4483 5.3167 1.0860 10 8 5.8271 6.5439 0.7295 11 8 7.6796 4.8780 0.5284 12 7 6.6683 5.3632 2.7267 13 6 5.8252 6.2293 3.5545 14 6 7.7058 4.5381 3.3503 15 1 8.2261 3.9663 2.5819 16 6 8.7048 5.4395 4.0788 17 6 7.0703 3.5926 4.3368 18 1 6.0004 3.6047 4.4841 19 6 7.8546 2.7120 5.0512 20 7 7.2999 1.8865 5.9117 21 14 9.7049 2.6905 4.7959 22 1 10.3460 3.6402 5.7404 23 1 10.2229 1.3209 5.0432 24 1 10.0169 3.0932 3.4009 25 7 2.8881 1.9531 0.8989 26 1 3.2877 1.4947 1.6545 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.2655 4.4173 -1.0918 33 1 3.9331 4.0747 2.3259 34 1 3.6056 5.2683 1.0467 35 1 5.6068 3.3367 0.2729 36 1 6.2924 7.2097 3.6474 37 1 4.8458 6.3363 3.0881 38 1 5.7102 5.7865 4.5437 39 1 9.1645 6.1233 3.3653 40 1 8.1848 6.0114 4.8472 41 1 9.4765 4.8255 4.5432 42 1 7.8517 1.2672 6.4147 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364967164.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:56 Heat of formation + Delta-G solvation = -20.315825 kcal Electronic energy + Delta-G solvation = -25209.465614 eV Core-core repulsion = 21545.454109 eV Total energy + Delta-G solvation = -3664.011505 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.17356 -36.90198 -36.49503 -35.47871 -35.43126 -33.69288 -32.62728 -32.45898 -30.11969 -29.27533 -25.85379 -25.44375 -25.14095 -23.66527 -21.19312 -21.00527 -20.32635 -18.97999 -17.84070 -17.46490 -16.91864 -16.53276 -16.09441 -15.43526 -15.20051 -14.70646 -14.42542 -14.30263 -13.72876 -13.52741 -13.34613 -13.31021 -13.10425 -12.89831 -12.51166 -12.41058 -12.20846 -12.02257 -11.77868 -11.72320 -11.63434 -11.57740 -11.36339 -11.29536 -11.03929 -10.63922 -10.22486 -10.12576 -10.04246 -9.69489 -9.56740 -9.31113 -8.76165 -8.40498 -8.19425 -6.28262 -4.29629 1.00715 1.93210 3.00131 3.02728 3.15920 3.28788 3.30914 3.39993 3.97006 4.24048 4.27920 4.65857 4.77425 4.84718 5.03580 5.04610 5.08172 5.19854 5.33439 5.47998 5.49287 5.58884 5.62154 5.84333 5.87418 5.99753 6.04143 6.09750 6.18926 6.22750 6.32875 6.46102 6.57207 6.68685 6.78306 7.04017 7.21545 7.30359 7.31190 7.53559 8.00866 8.30611 8.72316 9.33223 10.83780 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.013598 B = 0.004427 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.648603 B = 6323.100443 C = 7688.372577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.038 4.038 3 C 0.213 3.787 4 N -0.490 5.490 5 C -0.006 4.006 6 C -0.031 4.031 7 C 0.198 3.802 8 N -1.125 6.125 9 S 2.785 3.215 10 O -0.991 6.991 11 O -0.982 6.982 12 N -0.985 5.985 13 C 0.101 3.899 14 C 0.239 3.761 15 H 0.057 0.943 16 C -0.159 4.159 17 C -0.528 4.528 18 H 0.082 0.918 19 C 0.076 3.924 20 N -0.894 5.894 21 Si 0.877 3.123 22 H -0.275 1.275 23 H -0.294 1.294 24 H -0.261 1.261 25 N -0.555 5.555 26 H 0.424 0.576 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.172 0.828 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.414 0.586 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.035 0.965 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.660 -0.088 -7.559 12.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.077 4.077 3 C -0.052 4.052 4 N -0.210 5.210 5 C -0.156 4.156 6 C -0.148 4.148 7 C 0.071 3.929 8 N -0.884 5.884 9 S 2.794 3.206 10 O -0.974 6.974 11 O -0.966 6.966 12 N -0.826 5.826 13 C -0.045 4.045 14 C 0.134 3.866 15 H 0.074 0.926 16 C -0.218 4.218 17 C -0.567 4.567 18 H 0.100 0.900 19 C -0.127 4.127 20 N -0.531 5.531 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.222 1.222 24 H -0.186 1.186 25 N -0.158 5.158 26 H 0.262 0.738 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.189 0.811 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.247 0.753 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.802 0.438 -8.655 13.084 hybrid contribution 1.768 -0.795 1.302 2.335 sum -8.034 -0.358 -7.353 10.897 Atomic orbital electron populations 1.21668 0.93454 1.01881 1.03018 1.19962 0.97104 0.87056 1.03570 1.23268 0.95040 0.97588 0.89271 1.70208 1.25334 0.99746 1.25695 1.22198 0.98940 0.97872 0.96552 1.21118 1.06146 0.85970 1.01566 1.19510 0.79153 0.96833 0.97381 1.56118 1.21316 1.39867 1.71091 1.01751 0.72668 0.73105 0.73081 1.93560 1.77950 1.43268 1.82615 1.93594 1.42670 1.82619 1.77694 1.57478 1.45663 1.54709 1.24795 1.21299 0.92313 0.93194 0.97675 1.19085 0.84766 0.88465 0.94292 0.92568 1.22412 0.99279 0.99780 1.00303 1.21183 0.96085 1.17508 1.21943 0.90032 1.24884 0.98469 0.94891 0.94452 1.69866 1.35996 1.21987 1.25265 0.87007 0.86140 0.76408 0.79733 1.20215 1.22175 1.18607 1.43234 1.36705 1.10407 1.25503 0.73770 0.91986 0.92690 0.91354 0.89259 0.90322 0.81109 0.90411 0.88350 0.75280 0.93537 0.92840 0.89668 0.94632 0.92233 0.93318 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.87 37.16 0.37 -0.77 16 2 C -0.04 -0.32 6.56 -27.88 -0.18 -0.51 16 3 C 0.21 2.54 7.43 -155.42 -1.15 1.38 16 4 N -0.49 -6.82 11.21 -10.81 -0.12 -6.94 16 5 C -0.01 -0.07 11.79 -17.81 -0.21 -0.28 16 6 C -0.03 -0.39 6.63 -81.60 -0.54 -0.93 16 7 C 0.20 2.54 6.80 -5.20 -0.04 2.50 16 8 N -1.12 -16.50 6.05 -11.66 -0.07 -16.58 16 9 S 2.79 49.71 6.10 -107.50 -0.66 49.06 16 10 O -0.99 -18.49 16.68 -57.17 -0.95 -19.45 16 11 O -0.98 -20.62 16.70 -57.17 -0.95 -21.58 16 12 N -0.98 -18.39 3.12 -115.85 -0.36 -18.76 16 13 C 0.10 1.62 9.28 59.85 0.56 2.17 16 14 C 0.24 5.25 2.21 -69.08 -0.15 5.10 16 15 H 0.06 1.32 5.97 -51.93 -0.31 1.01 16 16 C -0.16 -3.29 8.67 37.16 0.32 -2.97 16 17 C -0.53 -13.08 8.57 -34.44 -0.30 -13.38 16 18 H 0.08 2.12 7.58 -52.49 -0.40 1.72 16 19 C 0.08 2.01 5.45 -17.82 -0.10 1.91 16 20 N -0.89 -24.94 13.96 55.43 0.77 -24.17 16 21 Si 0.88 20.57 24.37 -169.99 -4.14 16.43 16 22 H -0.28 -6.28 6.87 56.52 0.39 -5.89 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 24 H -0.26 -6.03 6.53 56.52 0.37 -5.66 16 25 N -0.56 -6.48 6.15 -6.54 -0.04 -6.52 16 26 H 0.42 4.31 8.96 -40.82 -0.37 3.95 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.10 1.15 7.75 -51.93 -0.40 0.75 16 35 H 0.41 5.76 8.65 -34.47 -0.30 5.46 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.72 7.79 -51.93 -0.40 0.31 16 38 H 0.08 1.43 7.02 -51.93 -0.36 1.06 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 1.15 7.67 -51.93 -0.40 0.76 16 41 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 42 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 354.27 15.07 5.34 5.34 Total: -1.00 -32.49 354.27 -8.71 -41.20 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.10 Total: 7.73 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -1.43 Total: -5.78 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: 0.18 Total: -72.96 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -1.91 Total: -41.02 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.14 Total: 16.43 kcal Atomic # 16 Polarization: 49.71 SS G_CDS: -0.66 Total: 49.06 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.49 -8.71 -41.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364967164.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.889 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds