Wall clock time and date at job start Tue Mar 31 2020 11:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46731 * 2 1 4 4 N 1.30492 * 125.65031 * 305.02219 * 3 2 1 5 5 C 1.34126 * 109.25632 * 179.73744 * 4 3 2 6 6 C 1.34673 * 108.02024 * 0.39768 * 5 4 3 7 7 C 1.50694 * 126.59144 * 179.87176 * 6 5 4 8 8 N 1.46496 * 109.47433 * 264.68951 * 7 6 5 9 9 S 1.65599 * 120.00176 * 164.99923 * 8 7 6 10 10 O 1.42096 * 106.40271 * 311.46484 * 9 8 7 11 11 O 1.42104 * 106.40293 * 178.54053 * 9 8 7 12 12 N 1.65603 * 107.21785 * 65.00401 * 9 8 7 13 13 C 1.46500 * 120.00003 * 270.00182 * 12 9 8 14 14 C 1.46496 * 120.00062 * 89.99674 * 12 9 8 15 15 H 1.09001 * 109.47464 * 0.02562 * 14 12 9 16 16 C 1.53006 * 109.46995 * 120.00453 * 14 12 9 17 17 C 1.50699 * 109.47248 * 240.00138 * 14 12 9 18 18 H 1.07999 * 120.00019 * 0.02562 * 17 14 12 19 19 C 1.37879 * 119.99908 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99546 * 180.02562 * 19 17 14 21 21 Si 1.86797 * 120.00061 * 359.97438 * 19 17 14 22 22 H 1.48496 * 109.47023 * 90.00536 * 21 19 17 23 23 H 1.48503 * 109.47041 * 210.00292 * 21 19 17 24 24 H 1.48500 * 109.47388 * 329.99951 * 21 19 17 25 25 N 1.35044 * 125.64680 * 125.00547 * 3 2 1 26 26 H 0.96997 * 126.39603 * 0.02562 * 25 3 2 27 27 H 1.09003 * 109.47342 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47622 * 299.99726 * 1 2 3 29 29 H 1.08994 * 109.47472 * 59.99981 * 1 2 3 30 30 H 1.08998 * 109.46885 * 239.99936 * 2 1 3 31 31 H 1.09003 * 109.47195 * 119.99990 * 2 1 3 32 32 H 1.08002 * 125.99446 * 180.25429 * 5 4 3 33 33 H 1.08999 * 109.46964 * 144.68814 * 7 6 5 34 34 H 1.09004 * 109.47039 * 24.69307 * 7 6 5 35 35 H 0.97005 * 120.00284 * 345.00455 * 8 7 6 36 36 H 1.08998 * 109.46877 * 269.99776 * 13 12 9 37 37 H 1.09004 * 109.46845 * 29.99796 * 13 12 9 38 38 H 1.08994 * 109.47249 * 150.00027 * 13 12 9 39 39 H 1.09001 * 109.47002 * 299.99701 * 16 14 12 40 40 H 1.08993 * 109.46955 * 60.00138 * 16 14 12 41 41 H 1.09000 * 109.47050 * 179.97438 * 16 14 12 42 42 H 0.97005 * 119.99945 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 1.7120 2.3408 -0.8684 5 6 2.3411 3.4831 -0.5550 6 6 3.0862 3.2603 0.5444 7 6 3.9644 4.2597 1.2521 8 7 5.3423 4.1245 0.7733 9 16 6.4483 5.3167 1.0860 10 8 5.8271 6.5439 0.7295 11 8 7.6796 4.8780 0.5284 12 7 6.6683 5.3632 2.7267 13 6 5.8252 6.2293 3.5545 14 6 7.7058 4.5381 3.3503 15 1 8.2261 3.9663 2.5819 16 6 8.7048 5.4395 4.0788 17 6 7.0703 3.5926 4.3368 18 1 6.0004 3.6047 4.4841 19 6 7.8546 2.7120 5.0512 20 7 7.2999 1.8865 5.9117 21 14 9.7049 2.6905 4.7959 22 1 10.3460 3.6402 5.7404 23 1 10.2229 1.3209 5.0432 24 1 10.0169 3.0932 3.4009 25 7 2.8881 1.9531 0.8989 26 1 3.2877 1.4947 1.6545 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.2655 4.4173 -1.0918 33 1 3.9331 4.0747 2.3259 34 1 3.6056 5.2683 1.0467 35 1 5.6068 3.3367 0.2729 36 1 6.2924 7.2097 3.6474 37 1 4.8458 6.3363 3.0881 38 1 5.7102 5.7865 4.5437 39 1 9.1645 6.1233 3.3653 40 1 8.1848 6.0114 4.8472 41 1 9.4765 4.8255 4.5432 42 1 7.8517 1.2672 6.4147 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364967164.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:55 Heat of formation + Delta-G solvation = -45.601505 kcal Electronic energy + Delta-G solvation = -25210.562083 eV Core-core repulsion = 21545.454109 eV Total energy + Delta-G solvation = -3665.107974 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.12602 -38.41908 -38.08395 -36.95169 -36.58505 -34.51868 -34.46747 -33.43502 -31.80035 -30.26569 -27.29557 -26.96519 -26.42303 -24.48193 -22.72895 -22.12825 -21.25267 -20.36967 -19.08615 -18.91737 -18.40037 -18.12833 -17.41736 -16.91624 -16.32588 -15.94917 -15.49682 -15.30901 -15.15793 -14.91213 -14.60820 -14.39771 -14.29563 -14.14354 -14.10906 -13.84834 -13.52144 -13.34431 -13.22953 -13.13573 -12.96601 -12.89659 -12.72879 -12.41435 -12.23960 -12.02723 -12.00603 -11.48271 -11.35932 -11.13930 -11.02366 -10.75209 -10.50888 -9.78375 -9.33531 -8.30086 -6.32514 -0.40009 0.94015 1.30542 1.39814 1.46104 1.92003 2.10766 2.14536 2.31118 2.58464 3.05587 3.35659 3.46733 3.73357 3.95673 4.02203 4.19100 4.34241 4.38213 4.40070 4.47003 4.62359 4.66349 4.68195 4.74094 4.78177 4.85421 4.91763 5.02769 5.13519 5.14157 5.24344 5.26027 5.39459 5.47026 5.53384 5.73520 5.77977 6.01249 6.33657 6.42349 6.71966 7.05331 7.32839 8.84496 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.013598 B = 0.004427 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.648603 B = 6323.100443 C = 7688.372577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.039 4.039 3 C 0.214 3.786 4 N -0.519 5.519 5 C -0.017 4.017 6 C -0.038 4.038 7 C 0.198 3.802 8 N -1.118 6.118 9 S 2.802 3.198 10 O -0.996 6.996 11 O -1.013 7.013 12 N -0.989 5.989 13 C 0.094 3.906 14 C 0.240 3.760 15 H 0.043 0.957 16 C -0.161 4.161 17 C -0.513 4.513 18 H 0.063 0.937 19 C 0.030 3.970 20 N -0.935 5.935 21 Si 0.920 3.080 22 H -0.264 1.264 23 H -0.299 1.299 24 H -0.256 1.256 25 N -0.554 5.554 26 H 0.430 0.570 27 H 0.083 0.917 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.183 0.817 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.418 0.582 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.040 0.960 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.809 0.271 -7.946 12.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.078 4.078 3 C -0.050 4.050 4 N -0.239 5.239 5 C -0.167 4.167 6 C -0.155 4.155 7 C 0.072 3.928 8 N -0.879 5.879 9 S 2.811 3.189 10 O -0.980 6.980 11 O -0.998 6.998 12 N -0.830 5.830 13 C -0.051 4.051 14 C 0.134 3.866 15 H 0.061 0.939 16 C -0.220 4.220 17 C -0.552 4.552 18 H 0.081 0.919 19 C -0.169 4.169 20 N -0.574 5.574 21 Si 0.749 3.251 22 H -0.190 1.190 23 H -0.227 1.227 24 H -0.181 1.181 25 N -0.158 5.158 26 H 0.270 0.730 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.200 0.800 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.252 0.748 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.951 0.826 -9.039 13.469 hybrid contribution 1.676 -0.906 1.371 2.348 sum -8.274 -0.080 -7.668 11.281 Atomic orbital electron populations 1.21630 0.92974 1.02982 1.01966 1.20160 0.97435 0.85296 1.04936 1.23912 0.94168 0.98518 0.88444 1.70222 1.26414 1.00437 1.26858 1.22509 0.98963 0.98367 0.96833 1.21056 1.06356 0.86396 1.01692 1.19637 0.78008 0.97764 0.97433 1.55882 1.21696 1.39439 1.70914 1.01126 0.72186 0.73064 0.72510 1.93550 1.77894 1.43963 1.82559 1.93547 1.44787 1.83144 1.78294 1.57420 1.45656 1.54733 1.25209 1.21498 0.93369 0.93188 0.97042 1.18851 0.85655 0.88717 0.93352 0.93931 1.22386 0.98845 0.99820 1.00908 1.21368 0.95309 1.17206 1.21349 0.91877 1.25481 1.01792 0.95018 0.94619 1.69970 1.37233 1.23337 1.26895 0.86298 0.82481 0.76285 0.80074 1.18992 1.22687 1.18074 1.43280 1.36641 1.10185 1.25686 0.73045 0.89814 0.93337 0.92761 0.88357 0.88424 0.79982 0.90217 0.86983 0.74755 0.92059 0.90296 0.90758 0.92750 0.91167 0.94136 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.87 71.98 0.71 -1.28 16 2 C -0.04 -0.61 6.56 29.85 0.20 -0.41 16 3 C 0.21 4.87 7.43 138.13 1.03 5.90 16 4 N -0.52 -14.04 11.21 -188.13 -2.11 -16.15 16 5 C -0.02 -0.43 11.79 83.52 0.98 0.55 16 6 C -0.04 -0.92 6.63 40.95 0.27 -0.65 16 7 C 0.20 4.77 6.80 85.63 0.58 5.36 16 8 N -1.12 -31.39 6.05 -190.80 -1.15 -32.55 16 9 S 2.80 95.88 6.10 -56.49 -0.34 95.54 16 10 O -1.00 -35.15 16.68 -128.00 -2.14 -37.28 16 11 O -1.01 -41.56 16.70 -128.00 -2.14 -43.70 16 12 N -0.99 -35.36 3.12 -520.45 -1.62 -36.98 16 13 C 0.09 2.81 9.28 127.77 1.19 4.00 16 14 C 0.24 10.26 2.21 44.25 0.10 10.36 16 15 H 0.04 1.96 5.97 -2.39 -0.01 1.95 16 16 C -0.16 -6.33 8.67 71.98 0.62 -5.71 16 17 C -0.51 -25.17 8.57 25.60 0.22 -24.95 16 18 H 0.06 3.28 7.58 -2.91 -0.02 3.26 16 19 C 0.03 1.58 5.45 84.65 0.46 2.04 16 20 N -0.93 -52.51 13.96 21.45 0.30 -52.21 16 21 Si 0.92 41.69 24.37 68.60 1.67 43.37 16 22 H -0.26 -11.38 6.87 99.48 0.68 -10.70 16 23 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.26 -11.30 6.53 99.48 0.65 -10.66 16 25 N -0.55 -12.34 6.15 -174.61 -1.07 -13.42 16 26 H 0.43 8.30 8.96 -92.71 -0.83 7.47 16 27 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.18 3.98 8.06 -2.91 -0.02 3.96 16 33 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.11 2.40 7.75 -2.39 -0.02 2.38 16 35 H 0.42 11.23 8.65 -96.74 -0.84 10.39 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.08 1.93 7.79 -2.38 -0.02 1.91 16 38 H 0.07 2.39 7.02 -2.39 -0.02 2.37 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.07 2.57 7.67 -2.39 -0.02 2.56 16 41 H 0.04 1.66 3.27 -2.39 -0.01 1.65 16 42 H 0.27 14.24 8.31 -92.70 -0.77 13.47 16 Total: -1.00 -67.81 354.27 -2.94 -70.75 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: -0.69 Total: 27.43 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 6.36 Total: -4.80 kcal Atomic # 7 Polarization: -145.65 SS G_CDS: -5.66 Total: -151.31 kcal Atomic # 8 Polarization: -76.71 SS G_CDS: -4.27 Total: -80.98 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 1.67 Total: 43.37 kcal Atomic # 16 Polarization: 95.88 SS G_CDS: -0.34 Total: 95.54 kcal Total: -67.81 -2.94 -70.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364967164.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.153 kcal (2) G-P(sol) polarization free energy of solvation -67.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds