Wall clock time and date at job start Tue Mar 31 2020 11:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30836 * 125.95797 * 2 1 4 4 C 1.33238 * 109.82503 * 180.02562 * 3 2 1 5 5 C 1.50705 * 125.52284 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46845 * 90.00329 * 5 4 3 7 7 N 1.46501 * 109.46703 * 179.97438 * 6 5 4 8 8 C 1.34784 * 119.99925 * 179.97438 * 7 6 5 9 9 O 1.21577 * 119.99799 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00112 * 179.97438 * 8 7 6 11 11 C 1.39454 * 120.00224 * 184.82373 * 10 8 7 12 12 C 1.38644 * 119.64992 * 185.83266 * 11 10 8 13 13 C 1.40826 * 118.67290 * 179.72967 * 12 11 10 14 14 C 1.41542 * 120.99716 * 180.25442 * 13 12 11 15 15 H 1.08004 * 119.99848 * 146.64534 * 14 13 12 16 16 C 1.40029 * 119.99933 * 326.65259 * 14 13 12 17 17 N 1.30748 * 120.00210 * 168.30852 * 16 14 13 18 18 Si 1.86807 * 119.99973 * 348.30810 * 16 14 13 19 19 H 1.48499 * 109.46661 * 92.68924 * 18 16 14 20 20 H 1.48499 * 109.46802 * 212.68768 * 18 16 14 21 21 H 1.48493 * 109.47084 * 332.68780 * 18 16 14 22 22 C 1.41161 * 118.00609 * 0.27160 * 13 12 11 23 23 C 1.36598 * 119.12605 * 0.02562 * 22 13 12 24 24 N 1.32065 * 121.25890 * 0.02562 * 23 22 13 25 25 N 1.30708 * 108.95240 * 0.26335 * 4 3 2 26 26 N 1.34427 * 125.96304 * 180.02562 * 2 1 3 27 27 H 0.96996 * 126.82520 * 359.97272 * 26 2 1 28 28 H 1.08993 * 109.47099 * 89.97163 * 1 2 3 29 29 H 1.08995 * 109.46582 * 209.97362 * 1 2 3 30 30 H 1.09002 * 109.47032 * 329.97246 * 1 2 3 31 31 H 1.08998 * 109.47335 * 329.99969 * 5 4 3 32 32 H 1.09002 * 109.46870 * 209.99997 * 5 4 3 33 33 H 1.08998 * 109.47448 * 59.99709 * 6 5 4 34 34 H 1.09002 * 109.47115 * 299.99518 * 6 5 4 35 35 H 0.97001 * 120.00447 * 0.02562 * 7 6 5 36 36 H 0.97005 * 119.99704 * 4.83053 * 10 8 7 37 37 H 1.07996 * 120.66466 * 0.02562 * 12 11 10 38 38 H 0.96995 * 119.99798 * 179.97438 * 17 16 14 39 39 H 1.07998 * 120.43763 * 179.97438 * 22 13 12 40 40 H 1.08000 * 119.36777 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0591 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7372 1.6238 -0.0002 6 6 5.1375 1.9391 1.4425 7 7 6.2869 2.8475 1.4428 8 6 6.8156 3.2650 2.6102 9 8 6.3388 2.8874 3.6629 10 7 7.8733 4.1003 2.6106 11 6 8.4832 4.4526 3.8141 12 6 9.4911 5.4046 3.8194 13 6 10.0888 5.7491 5.0471 14 6 11.1182 6.7185 5.1101 15 1 11.2047 7.3588 5.9755 16 6 12.0243 6.8474 4.0503 17 7 12.8259 7.8790 3.9973 18 14 12.0879 5.5454 2.7122 19 1 11.1942 5.9408 1.5941 20 1 13.4802 5.4177 2.2117 21 1 11.6400 4.2430 3.2672 22 6 9.6308 5.0982 6.2130 23 6 8.6359 4.1682 6.1080 24 7 8.0983 3.8688 4.9395 25 7 3.6195 -0.6167 -0.0066 26 7 2.2965 -1.0880 -0.0005 27 1 2.0095 -2.0146 -0.0005 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3632 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5143 31 1 4.4700 2.5475 -0.5133 32 1 5.5742 1.1515 -0.5146 33 1 5.4048 1.0153 1.9556 34 1 4.3006 2.4114 1.9569 35 1 6.6671 3.1490 0.6029 36 1 8.2102 4.4564 1.7736 37 1 9.8082 5.8761 2.9010 38 1 13.4538 7.9680 3.2633 39 1 10.0619 5.3320 7.1752 40 1 8.2828 3.6676 6.9974 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365252158.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:38 Heat of formation + Delta-G solvation = 93.683154 kcal Electronic energy + Delta-G solvation = -24507.244258 eV Core-core repulsion = 20745.024919 eV Total energy + Delta-G solvation = -3762.219338 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -42.52675 -39.97081 -38.32772 -35.78441 -34.29797 -33.76711 -33.50165 -32.75596 -31.26659 -30.61289 -28.78954 -28.09882 -25.97431 -24.26021 -22.31651 -21.82659 -21.59295 -20.77384 -20.01794 -18.41448 -18.07787 -17.71433 -16.52181 -16.02944 -15.63407 -15.57987 -15.06733 -14.73122 -14.60500 -14.19108 -14.00269 -13.80722 -13.70338 -13.43082 -13.18439 -12.98675 -12.91965 -12.67545 -12.26079 -12.22809 -11.69312 -11.52039 -10.97056 -10.80640 -10.64386 -10.44387 -10.38814 -10.04816 -9.88459 -9.84411 -9.68451 -9.35092 -8.90638 -8.15950 -7.87777 -7.22214 -6.99287 -4.70018 1.18411 2.21247 2.41877 2.43104 2.65923 2.90279 3.03059 3.14967 3.26935 3.59585 3.74025 3.91971 4.15113 4.33899 4.52818 4.63620 4.74966 4.76828 4.87526 5.12162 5.22080 5.29048 5.42316 5.68552 5.77060 5.85634 5.88646 6.03993 6.27616 6.38351 6.44275 6.57150 6.59005 6.63558 6.96939 7.06980 7.21995 7.32209 7.68867 7.71548 7.97072 8.22328 8.26035 8.47369 8.69514 9.02069 9.50149 10.02548 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.028251 B = 0.002294 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.874666 B =12202.273221 C =12804.208420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.283 3.717 3 N -0.535 5.535 4 C 0.238 3.762 5 C -0.038 4.038 6 C 0.152 3.848 7 N -0.752 5.752 8 C 0.695 3.305 9 O -0.528 6.528 10 N -0.672 5.672 11 C 0.386 3.614 12 C -0.317 4.317 13 C 0.130 3.870 14 C -0.441 4.441 15 H 0.095 0.905 16 C 0.085 3.915 17 N -0.808 5.808 18 Si 0.916 3.084 19 H -0.271 1.271 20 H -0.291 1.291 21 H -0.245 1.245 22 C -0.269 4.269 23 C 0.129 3.871 24 N -0.552 5.552 25 N -0.309 5.309 26 N -0.483 5.483 27 H 0.440 0.560 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.393 0.607 36 H 0.404 0.596 37 H 0.109 0.891 38 H 0.286 0.714 39 H 0.110 0.890 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.532 -13.926 -13.222 26.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.005 3.995 3 N -0.264 5.264 4 C -0.046 4.046 5 C -0.078 4.078 6 C 0.026 3.974 7 N -0.411 5.411 8 C 0.394 3.606 9 O -0.398 6.398 10 N -0.320 5.320 11 C 0.157 3.843 12 C -0.343 4.343 13 C 0.122 3.878 14 C -0.472 4.472 15 H 0.113 0.887 16 C -0.135 4.135 17 N -0.433 5.433 18 Si 0.742 3.258 19 H -0.197 1.197 20 H -0.219 1.219 21 H -0.168 1.168 22 C -0.293 4.293 23 C -0.023 4.023 24 N -0.271 5.271 25 N -0.138 5.138 26 N -0.202 5.202 27 H 0.286 0.714 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.226 0.774 36 H 0.239 0.761 37 H 0.126 0.874 38 H 0.097 0.903 39 H 0.128 0.872 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.911 -14.818 -12.346 27.012 hybrid contribution 0.854 -0.105 -1.523 1.749 sum -18.057 -14.923 -13.869 27.223 Atomic orbital electron populations 1.20417 0.83500 1.05237 1.04600 1.24450 0.96722 0.82797 0.95562 1.70391 1.01354 1.29500 1.25178 1.23886 0.93090 0.89939 0.97647 1.20091 0.92104 0.97317 0.98294 1.20930 0.88198 0.93764 0.94555 1.45075 1.35664 1.52946 1.07397 1.15981 0.80539 0.79956 0.84120 1.91026 1.61142 1.58403 1.29279 1.42622 1.32088 1.48857 1.08436 1.17761 0.90091 0.91328 0.85082 1.21233 1.05245 1.08227 0.99630 1.17718 0.90754 0.89201 0.90156 1.19468 1.09086 1.14431 1.04207 0.88659 1.26149 0.94063 0.95446 0.97815 1.69612 1.17217 1.25796 1.30646 0.86241 0.76407 0.83091 0.80014 1.19686 1.21865 1.16848 1.21730 1.04771 1.03650 0.99120 1.21637 0.92301 0.94557 0.93792 1.67285 1.32249 1.30454 0.97125 1.78054 0.96663 1.12361 1.26713 1.47996 1.04313 1.10108 1.57762 0.71413 0.88924 0.89782 0.88141 0.88150 0.88662 0.91363 0.91047 0.77356 0.76127 0.87356 0.90316 0.87156 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 10.51 36.01 0.38 0.13 16 2 C 0.28 2.26 8.24 -155.69 -1.28 0.98 16 3 N -0.53 -6.00 11.19 -8.16 -0.09 -6.09 16 4 C 0.24 2.70 7.39 -156.86 -1.16 1.54 16 5 C -0.04 -0.35 5.96 -27.88 -0.17 -0.52 16 6 C 0.15 1.88 5.66 -4.04 -0.02 1.85 16 7 N -0.75 -9.82 5.56 -65.22 -0.36 -10.19 16 8 C 0.69 13.01 8.51 -86.91 -0.74 12.27 16 9 O -0.53 -12.33 14.64 5.30 0.08 -12.25 16 10 N -0.67 -12.69 5.40 -15.86 -0.09 -12.77 16 11 C 0.39 9.02 7.40 -154.68 -1.15 7.88 16 12 C -0.32 -7.60 6.96 -38.45 -0.27 -7.87 16 13 C 0.13 3.31 5.09 -106.55 -0.54 2.76 16 14 C -0.44 -11.72 9.66 -37.65 -0.36 -12.08 16 15 H 0.10 2.64 8.06 -52.48 -0.42 2.22 16 16 C 0.08 2.17 5.48 -17.34 -0.10 2.07 16 17 N -0.81 -21.02 13.92 55.55 0.77 -20.25 16 18 Si 0.92 20.23 24.49 -169.99 -4.16 16.07 16 19 H -0.27 -5.58 6.71 56.52 0.38 -5.20 16 20 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 21 H -0.25 -5.69 6.70 56.52 0.38 -5.31 16 22 C -0.27 -6.36 9.85 -39.07 -0.38 -6.74 16 23 C 0.13 2.98 11.10 -18.04 -0.20 2.78 16 24 N -0.55 -13.71 7.90 -12.76 -0.10 -13.81 16 25 N -0.31 -3.51 12.80 32.42 0.41 -3.09 16 26 N -0.48 -3.78 7.45 32.62 0.24 -3.53 16 27 H 0.44 1.75 8.96 -182.33 -1.63 0.12 16 28 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.39 3.66 8.49 -40.82 -0.35 3.32 16 36 H 0.40 6.02 8.72 -40.82 -0.36 5.66 16 37 H 0.11 2.47 4.79 -52.49 -0.25 2.22 16 38 H 0.29 6.73 8.29 -40.82 -0.34 6.39 16 39 H 0.11 2.39 8.06 -52.49 -0.42 1.97 16 40 H 0.13 2.57 8.06 -52.49 -0.42 2.14 16 LS Contribution 346.09 15.07 5.22 5.22 Total: -1.00 -36.77 346.09 -10.07 -46.83 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -6.00 Total: 8.84 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: -5.99 Total: 5.04 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: 0.79 Total: -69.74 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.08 Total: -12.25 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.16 Total: 16.07 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.77 -10.07 -46.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365252158.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.516 kcal (2) G-P(sol) polarization free energy of solvation -36.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds