Wall clock time and date at job start Tue Mar 31 2020 11:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38201 * 120.83359 * 2 1 4 4 N 1.32504 * 119.18982 * 180.29365 * 3 2 1 5 5 C 1.31791 * 120.99018 * 359.72003 * 4 3 2 6 6 C 1.50702 * 119.08858 * 179.97438 * 5 4 3 7 7 N 1.31752 * 121.83005 * 0.02562 * 5 4 3 8 8 C 1.32927 * 120.69802 * 359.97438 * 7 5 4 9 9 N 1.39004 * 120.52012 * 180.02562 * 8 7 5 10 10 C 1.34774 * 120.00030 * 359.97438 * 9 8 7 11 11 O 1.21574 * 119.99893 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99964 * 180.02562 * 10 9 8 13 13 C 1.40187 * 120.00063 * 180.02562 * 12 10 9 14 14 C 1.40397 * 125.97282 * 0.02562 * 13 12 10 15 15 C 1.35243 * 107.86884 * 179.97438 * 14 13 12 16 16 N 1.34970 * 107.85602 * 0.24303 * 15 14 13 17 17 C 1.46501 * 125.97312 * 179.73678 * 16 15 14 18 18 C 1.50694 * 109.46826 * 124.99847 * 17 16 15 19 19 H 1.07995 * 120.00282 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99510 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00647 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99729 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47496 * 90.00207 * 22 20 18 24 24 H 1.48509 * 109.47182 * 210.00320 * 22 20 18 25 25 H 1.48503 * 109.47091 * 329.99700 * 22 20 18 26 26 N 1.31213 * 125.97042 * 179.97438 * 13 12 10 27 27 H 1.09002 * 109.47302 * 270.24880 * 1 2 3 28 28 H 1.08997 * 109.47212 * 30.24711 * 1 2 3 29 29 H 1.08998 * 109.47326 * 150.24982 * 1 2 3 30 30 H 1.08010 * 120.40613 * 359.97438 * 3 2 1 31 31 H 1.09004 * 109.47217 * 270.02080 * 6 5 4 32 32 H 1.08998 * 109.47159 * 30.02270 * 6 5 4 33 33 H 1.09003 * 109.47171 * 150.02197 * 6 5 4 34 34 H 0.96998 * 119.99960 * 179.97438 * 9 8 7 35 35 H 0.97007 * 119.99776 * 0.02562 * 12 10 9 36 36 H 1.08003 * 126.06783 * 359.92885 * 14 13 12 37 37 H 1.08002 * 126.06857 * 179.97438 * 15 14 13 38 38 H 1.09001 * 109.47097 * 245.00442 * 17 16 15 39 39 H 1.09002 * 109.46874 * 4.99797 * 17 16 15 40 40 H 0.96998 * 120.00291 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2153 1.1867 0.0000 4 7 3.5398 1.1487 -0.0059 5 6 4.1857 -0.0001 -0.0063 6 6 5.6927 0.0067 -0.0137 7 7 3.5505 -1.1544 -0.0013 8 6 2.2220 -1.1979 0.0048 9 7 1.5556 -2.4178 0.0106 10 6 2.2569 -3.5687 0.0095 11 8 3.4723 -3.5399 0.0040 12 7 1.6108 -4.7515 0.0146 13 6 2.3402 -5.9487 0.0140 14 6 3.7396 -6.0617 0.0090 15 6 4.0496 -7.3782 0.0108 16 7 2.8939 -8.0755 0.0113 17 6 2.7696 -9.5352 0.0076 18 6 1.9175 -9.9696 1.1721 19 1 1.5089 -9.2321 1.8471 20 6 1.6585 -11.3085 1.3751 21 7 2.1555 -12.2066 0.5529 22 14 0.6015 -11.8469 2.8181 23 1 -0.8227 -11.8898 2.3998 24 1 1.0266 -13.1974 3.2664 25 1 0.7605 -10.8818 3.9355 26 7 1.8344 -7.1594 0.0191 27 1 -0.3634 0.0045 1.0277 28 1 -0.3633 0.8877 -0.5176 29 1 -0.3634 -0.8922 -0.5099 30 1 1.6956 2.1335 -0.0004 31 1 6.0509 0.0062 -1.0432 32 1 6.0545 0.8993 0.4965 33 1 6.0626 -0.8806 0.5002 34 1 0.5859 -2.4407 0.0154 35 1 0.6410 -4.7744 0.0187 36 1 4.4437 -5.2428 0.0038 37 1 5.0451 -7.7970 0.0075 38 1 2.3042 -9.8579 -0.9237 39 1 3.7591 -9.9843 0.0940 40 1 1.9730 -13.1485 0.6956 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365504768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:04 Heat of formation + Delta-G solvation = 119.670891 kcal Electronic energy + Delta-G solvation = -24981.443807 eV Core-core repulsion = 21220.351381 eV Total energy + Delta-G solvation = -3761.092426 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.67993 -40.67725 -39.58891 -36.14507 -34.85036 -34.24321 -33.42891 -32.35822 -30.80697 -30.41131 -29.32852 -26.80362 -26.14671 -25.00891 -23.11721 -22.33443 -21.81046 -20.59325 -20.01050 -18.66246 -17.99992 -17.08790 -16.59970 -16.45390 -16.13885 -15.25795 -15.14066 -14.88275 -14.67483 -14.49690 -14.19701 -13.91443 -13.76838 -13.39587 -12.87549 -12.83196 -12.67679 -12.46703 -12.36815 -12.27167 -11.94362 -11.63505 -11.07824 -11.01584 -10.90383 -10.47387 -10.28994 -10.23143 -10.07077 -9.83297 -9.51972 -9.11375 -8.87592 -8.64808 -8.15708 -7.48019 -6.25765 -4.30895 0.65560 0.95032 1.94057 2.58944 3.01731 3.22399 3.26358 3.28306 3.34288 3.56553 3.79938 3.81160 3.93357 4.15896 4.28221 4.32966 4.50235 4.66568 5.08298 5.09344 5.10874 5.34484 5.41429 5.43748 5.45673 5.55083 5.68816 5.75704 5.88110 6.10218 6.28459 6.37996 6.49424 6.66367 6.85526 6.98482 7.06339 7.38568 7.63797 7.71072 7.87895 8.02696 8.04711 8.40080 8.60520 8.78533 9.34773 10.82962 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.025579 B = 0.002454 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.386551 B =11408.242506 C =12112.509296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.242 4.242 3 C 0.171 3.829 4 N -0.544 5.544 5 C 0.342 3.658 6 C -0.084 4.084 7 N -0.503 5.503 8 C 0.431 3.569 9 N -0.660 5.660 10 C 0.700 3.300 11 O -0.498 6.498 12 N -0.638 5.638 13 C 0.273 3.727 14 C -0.285 4.285 15 C 0.053 3.947 16 N -0.319 5.319 17 C 0.258 3.742 18 C -0.529 4.529 19 H 0.069 0.931 20 C 0.062 3.938 21 N -0.895 5.895 22 Si 0.908 3.092 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 N -0.304 5.304 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.169 0.831 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.416 0.584 35 H 0.407 0.593 36 H 0.162 0.838 37 H 0.169 0.831 38 H 0.045 0.955 39 H 0.058 0.942 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.431 25.252 -2.135 25.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.250 4.250 3 C 0.007 3.993 4 N -0.261 5.261 5 C 0.074 3.926 6 C -0.142 4.142 7 N -0.223 5.223 8 C 0.189 3.811 9 N -0.310 5.310 10 C 0.399 3.601 11 O -0.365 6.365 12 N -0.289 5.289 13 C 0.019 3.981 14 C -0.316 4.316 15 C -0.097 4.097 16 N -0.101 5.101 17 C 0.141 3.859 18 C -0.567 4.567 19 H 0.087 0.913 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.735 3.265 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 N -0.135 5.135 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.186 0.814 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.254 0.746 35 H 0.242 0.758 36 H 0.179 0.821 37 H 0.186 0.814 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.371 24.093 -2.178 24.194 hybrid contribution -1.948 -0.130 0.722 2.081 sum -2.319 23.963 -1.457 24.119 Atomic orbital electron populations 1.20565 0.89196 1.03320 1.02852 1.21004 0.98658 0.93307 1.12065 1.22871 0.89387 0.97257 0.89795 1.68266 1.09600 1.30467 1.17798 1.23230 0.98207 0.82308 0.88808 1.20567 0.85482 1.04220 1.03947 1.68328 1.06779 1.29859 1.17373 1.18126 0.88903 0.84263 0.89818 1.42652 1.10344 1.02831 1.75132 1.15668 0.85688 0.79493 0.79286 1.91008 1.10135 1.84333 1.50979 1.41315 1.09470 1.01782 1.76327 1.18713 0.90698 0.85033 1.03656 1.21521 0.93789 0.96495 1.19828 1.22565 0.92823 0.91997 1.02324 1.49082 1.01444 1.07771 1.51774 1.19754 0.99472 0.67411 0.99278 1.21253 1.31894 0.92506 1.11045 0.91307 1.24946 0.95972 0.96136 0.97037 1.69915 1.44553 1.01741 1.37127 0.86327 0.80337 0.77845 0.81978 1.20354 1.20969 1.19725 1.77323 1.12392 0.95637 1.28197 0.90616 0.90418 0.91726 0.81385 0.89586 0.89704 0.89216 0.74573 0.75808 0.82069 0.81404 0.93706 0.92467 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.46 9.64 36.00 0.35 -0.11 16 2 C -0.24 -2.05 5.93 -104.17 -0.62 -2.67 16 3 C 0.17 1.46 11.00 -17.27 -0.19 1.27 16 4 N -0.54 -6.05 10.33 -10.79 -0.11 -6.16 16 5 C 0.34 4.21 7.64 -157.23 -1.20 3.01 16 6 C -0.08 -0.79 10.32 36.01 0.37 -0.42 16 7 N -0.50 -7.18 7.93 -9.89 -0.08 -7.25 16 8 C 0.43 5.10 7.44 -154.43 -1.15 3.96 16 9 N -0.66 -7.08 5.31 -15.67 -0.08 -7.16 16 10 C 0.70 10.42 8.50 -86.92 -0.74 9.68 16 11 O -0.50 -9.14 11.76 5.30 0.06 -9.08 16 12 N -0.64 -9.60 5.45 -15.51 -0.08 -9.69 16 13 C 0.27 5.40 8.11 -154.37 -1.25 4.15 16 14 C -0.28 -5.65 9.61 -39.84 -0.38 -6.03 16 15 C 0.05 1.05 11.44 -17.24 -0.20 0.86 16 16 N -0.32 -7.35 3.67 -62.56 -0.23 -7.58 16 17 C 0.26 6.51 6.26 -5.20 -0.03 6.48 16 18 C -0.53 -14.60 9.23 -34.44 -0.32 -14.92 16 19 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 22 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 N -0.30 -6.89 12.42 31.44 0.39 -6.50 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.24 8.10 -51.93 -0.42 -0.18 16 29 H 0.06 0.24 6.68 -51.93 -0.35 -0.11 16 30 H 0.17 0.81 8.06 -52.48 -0.42 0.39 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.42 2.75 6.85 -40.82 -0.28 2.47 16 35 H 0.41 4.71 8.84 -40.82 -0.36 4.35 16 36 H 0.16 3.16 5.91 -52.48 -0.31 2.85 16 37 H 0.17 2.73 8.06 -52.49 -0.42 2.30 16 38 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 40 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 348.97 15.07 5.26 5.26 Total: -1.00 -35.37 348.97 -9.26 -44.63 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -4.64 Total: 4.93 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: -5.46 Total: 6.85 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: 0.54 Total: -68.81 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.06 Total: -9.08 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.37 -9.26 -44.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365504768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.303 kcal (2) G-P(sol) polarization free energy of solvation -35.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds