Wall clock time and date at job start Tue Mar 31 2020 11:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38201 * 120.83359 * 2 1 4 4 N 1.32504 * 119.18982 * 180.29365 * 3 2 1 5 5 C 1.31791 * 120.99018 * 359.72003 * 4 3 2 6 6 C 1.50702 * 119.08858 * 179.97438 * 5 4 3 7 7 N 1.31752 * 121.83005 * 0.02562 * 5 4 3 8 8 C 1.32927 * 120.69802 * 359.97438 * 7 5 4 9 9 N 1.39004 * 120.52012 * 180.02562 * 8 7 5 10 10 C 1.34774 * 120.00030 * 359.97438 * 9 8 7 11 11 O 1.21574 * 119.99893 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99964 * 180.02562 * 10 9 8 13 13 C 1.40187 * 120.00063 * 180.02562 * 12 10 9 14 14 C 1.40397 * 125.97282 * 0.02562 * 13 12 10 15 15 C 1.35243 * 107.86884 * 179.97438 * 14 13 12 16 16 N 1.34970 * 107.85602 * 0.24303 * 15 14 13 17 17 C 1.46501 * 125.97312 * 179.73678 * 16 15 14 18 18 C 1.50694 * 109.46826 * 124.99847 * 17 16 15 19 19 H 1.07995 * 120.00282 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99510 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00647 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99729 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47496 * 90.00207 * 22 20 18 24 24 H 1.48509 * 109.47182 * 210.00320 * 22 20 18 25 25 H 1.48503 * 109.47091 * 329.99700 * 22 20 18 26 26 N 1.31213 * 125.97042 * 179.97438 * 13 12 10 27 27 H 1.09002 * 109.47302 * 270.24880 * 1 2 3 28 28 H 1.08997 * 109.47212 * 30.24711 * 1 2 3 29 29 H 1.08998 * 109.47326 * 150.24982 * 1 2 3 30 30 H 1.08010 * 120.40613 * 359.97438 * 3 2 1 31 31 H 1.09004 * 109.47217 * 270.02080 * 6 5 4 32 32 H 1.08998 * 109.47159 * 30.02270 * 6 5 4 33 33 H 1.09003 * 109.47171 * 150.02197 * 6 5 4 34 34 H 0.96998 * 119.99960 * 179.97438 * 9 8 7 35 35 H 0.97007 * 119.99776 * 0.02562 * 12 10 9 36 36 H 1.08003 * 126.06783 * 359.92885 * 14 13 12 37 37 H 1.08002 * 126.06857 * 179.97438 * 15 14 13 38 38 H 1.09001 * 109.47097 * 245.00442 * 17 16 15 39 39 H 1.09002 * 109.46874 * 4.99797 * 17 16 15 40 40 H 0.96998 * 120.00291 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2153 1.1867 0.0000 4 7 3.5398 1.1487 -0.0059 5 6 4.1857 -0.0001 -0.0063 6 6 5.6927 0.0067 -0.0137 7 7 3.5505 -1.1544 -0.0013 8 6 2.2220 -1.1979 0.0048 9 7 1.5556 -2.4178 0.0106 10 6 2.2569 -3.5687 0.0095 11 8 3.4723 -3.5399 0.0040 12 7 1.6108 -4.7515 0.0146 13 6 2.3402 -5.9487 0.0140 14 6 3.7396 -6.0617 0.0090 15 6 4.0496 -7.3782 0.0108 16 7 2.8939 -8.0755 0.0113 17 6 2.7696 -9.5352 0.0076 18 6 1.9175 -9.9696 1.1721 19 1 1.5089 -9.2321 1.8471 20 6 1.6585 -11.3085 1.3751 21 7 2.1555 -12.2066 0.5529 22 14 0.6015 -11.8469 2.8181 23 1 -0.8227 -11.8898 2.3998 24 1 1.0266 -13.1974 3.2664 25 1 0.7605 -10.8818 3.9355 26 7 1.8344 -7.1594 0.0191 27 1 -0.3634 0.0045 1.0277 28 1 -0.3633 0.8877 -0.5176 29 1 -0.3634 -0.8922 -0.5099 30 1 1.6956 2.1335 -0.0004 31 1 6.0509 0.0062 -1.0432 32 1 6.0545 0.8993 0.4965 33 1 6.0626 -0.8806 0.5002 34 1 0.5859 -2.4407 0.0154 35 1 0.6410 -4.7744 0.0187 36 1 4.4437 -5.2428 0.0038 37 1 5.0451 -7.7970 0.0075 38 1 2.3042 -9.8579 -0.9237 39 1 3.7591 -9.9843 0.0940 40 1 1.9730 -13.1485 0.6956 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365504768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:03 Heat of formation + Delta-G solvation = 96.552221 kcal Electronic energy + Delta-G solvation = -24982.446308 eV Core-core repulsion = 21220.351381 eV Total energy + Delta-G solvation = -3762.094926 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.63000 -42.07014 -40.82037 -37.13692 -36.22002 -35.32320 -35.01856 -33.45473 -32.43498 -31.07789 -30.94513 -28.62882 -26.79282 -26.05552 -24.82492 -23.32065 -22.86496 -22.08141 -21.41179 -19.80340 -19.03526 -18.65087 -18.09293 -17.88664 -17.16882 -16.86012 -16.28017 -16.10754 -15.71574 -15.64689 -15.52199 -15.17025 -14.51326 -14.34286 -14.22460 -14.12350 -13.83585 -13.72681 -13.27294 -13.25949 -13.12977 -12.95311 -12.75495 -12.63301 -12.29203 -12.06834 -11.84238 -11.64353 -11.42235 -11.25054 -10.94412 -10.72171 -10.02528 -9.79938 -9.62433 -9.10670 -8.32911 -6.46953 -0.12766 0.16023 0.80328 1.06506 1.38558 1.38967 1.50421 1.64889 1.91104 2.29300 2.34850 2.72067 2.82501 2.98963 3.12403 3.32131 3.59140 3.93100 3.95656 4.10714 4.24898 4.41821 4.64731 4.72023 4.73814 4.80894 4.87807 4.89797 4.92689 4.96168 5.02041 5.05952 5.21461 5.26032 5.44812 5.57399 5.59758 5.80741 5.88595 6.06412 6.27095 6.53940 6.65793 7.03631 7.16826 7.22996 7.31716 8.74759 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.025579 B = 0.002454 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.386551 B =11408.242506 C =12112.509296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.221 4.221 3 C 0.165 3.835 4 N -0.552 5.552 5 C 0.319 3.681 6 C -0.080 4.080 7 N -0.544 5.544 8 C 0.399 3.601 9 N -0.640 5.640 10 C 0.702 3.298 11 O -0.535 6.535 12 N -0.628 5.628 13 C 0.283 3.717 14 C -0.292 4.292 15 C 0.058 3.942 16 N -0.343 5.343 17 C 0.272 3.728 18 C -0.547 4.547 19 H 0.053 0.947 20 C 0.018 3.982 21 N -0.921 5.921 22 Si 0.972 3.028 23 H -0.272 1.272 24 H -0.273 1.273 25 H -0.273 1.273 26 N -0.341 5.341 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.210 0.790 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.436 0.564 35 H 0.424 0.576 36 H 0.165 0.835 37 H 0.201 0.799 38 H 0.023 0.977 39 H 0.059 0.941 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.999 27.191 -1.550 27.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.229 4.229 3 C 0.001 3.999 4 N -0.270 5.270 5 C 0.051 3.949 6 C -0.139 4.139 7 N -0.265 5.265 8 C 0.158 3.842 9 N -0.293 5.293 10 C 0.401 3.599 11 O -0.404 6.404 12 N -0.281 5.281 13 C 0.028 3.972 14 C -0.323 4.323 15 C -0.090 4.090 16 N -0.125 5.125 17 C 0.154 3.846 18 C -0.585 4.585 19 H 0.071 0.929 20 C -0.182 4.182 21 N -0.560 5.560 22 Si 0.796 3.204 23 H -0.197 1.197 24 H -0.198 1.198 25 H -0.197 1.197 26 N -0.172 5.172 27 H 0.108 0.892 28 H 0.119 0.881 29 H 0.093 0.907 30 H 0.226 0.774 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.278 0.722 35 H 0.262 0.738 36 H 0.183 0.817 37 H 0.218 0.782 38 H 0.040 0.960 39 H 0.077 0.923 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.991 26.090 -1.601 26.215 hybrid contribution -1.469 -0.523 0.503 1.639 sum -3.460 25.567 -1.099 25.823 Atomic orbital electron populations 1.20733 0.86012 1.05019 1.04227 1.21401 1.00687 0.91701 1.09138 1.23631 0.88716 0.98945 0.88591 1.68314 1.11083 1.29838 1.17719 1.23578 0.99180 0.82337 0.89757 1.20591 0.84484 1.04361 1.04430 1.68228 1.08490 1.31204 1.18534 1.18526 0.88906 0.85261 0.91506 1.42325 1.11089 1.01387 1.74468 1.15806 0.85412 0.80071 0.78633 1.90981 1.11937 1.84996 1.52519 1.41245 1.10179 1.00578 1.76083 1.18979 0.91208 0.85663 1.01366 1.21668 0.94063 0.96527 1.20030 1.23144 0.93376 0.91956 1.00562 1.48843 1.02531 1.07153 1.54020 1.19352 0.98796 0.69044 0.97436 1.21398 1.32738 0.92690 1.11687 0.92880 1.25741 0.96957 0.96009 0.99522 1.69993 1.45329 1.02171 1.38458 0.85347 0.78747 0.77662 0.78649 1.19717 1.19776 1.19742 1.77245 1.13072 0.96521 1.30398 0.89187 0.88090 0.90733 0.77377 0.88905 0.88150 0.90389 0.72219 0.73841 0.81744 0.78217 0.95956 0.92350 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.52 9.64 71.23 0.69 0.17 16 2 C -0.22 -3.17 5.93 -19.57 -0.12 -3.29 16 3 C 0.17 2.37 11.00 84.58 0.93 3.30 16 4 N -0.55 -11.52 10.33 -188.06 -1.94 -13.47 16 5 C 0.32 7.82 7.64 138.76 1.06 8.88 16 6 C -0.08 -1.54 10.32 71.24 0.73 -0.81 16 7 N -0.54 -15.55 7.93 -185.21 -1.47 -17.02 16 8 C 0.40 8.99 7.44 133.00 0.99 9.98 16 9 N -0.64 -12.90 5.31 -321.76 -1.71 -14.61 16 10 C 0.70 20.57 8.50 179.05 1.52 22.09 16 11 O -0.53 -19.86 11.76 -3.95 -0.05 -19.91 16 12 N -0.63 -18.54 5.45 -321.26 -1.75 -20.29 16 13 C 0.28 11.24 8.11 133.31 1.08 12.32 16 14 C -0.29 -11.59 9.61 22.10 0.21 -11.38 16 15 C 0.06 2.31 11.44 83.52 0.96 3.27 16 16 N -0.34 -16.11 3.67 -351.84 -1.29 -17.40 16 17 C 0.27 14.10 6.26 85.63 0.54 14.63 16 18 C -0.55 -30.73 9.23 25.60 0.24 -30.49 16 19 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 20 C 0.02 0.99 5.46 84.65 0.46 1.46 16 21 N -0.92 -52.05 13.29 21.45 0.28 -51.76 16 22 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 26 N -0.34 -15.68 12.42 -54.44 -0.68 -16.35 16 27 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.10 0.12 8.10 -2.39 -0.02 0.10 16 29 H 0.07 0.27 6.68 -2.39 -0.02 0.25 16 30 H 0.21 1.13 8.06 -2.91 -0.02 1.10 16 31 H 0.09 1.57 8.14 -2.38 -0.02 1.56 16 32 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 34 H 0.44 4.78 6.85 -92.71 -0.63 4.15 16 35 H 0.42 9.35 8.84 -92.70 -0.82 8.53 16 36 H 0.17 6.50 5.91 -2.91 -0.02 6.49 16 37 H 0.20 6.32 8.06 -2.91 -0.02 6.30 16 38 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.06 2.96 8.07 -2.39 -0.02 2.94 16 40 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -78.33 348.97 2.37 -75.95 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -0.34 Total: 19.34 kcal Atomic # 6 Polarization: 20.84 SS G_CDS: 9.29 Total: 30.13 kcal Atomic # 7 Polarization: -142.36 SS G_CDS: -8.55 Total: -150.91 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.05 Total: -19.91 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -78.33 2.37 -75.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365504768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.504 kcal (2) G-P(sol) polarization free energy of solvation -78.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds