Wall clock time and date at job start Tue Mar 31 2020 11:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30841 * 125.96088 * 2 1 4 4 C 1.33234 * 109.82814 * 180.12210 * 3 2 1 5 5 C 1.50701 * 125.52935 * 179.85491 * 4 3 2 6 6 H 1.09007 * 109.46489 * 344.72312 * 5 4 3 7 7 C 1.52994 * 109.47268 * 104.71473 * 5 4 3 8 8 N 1.46497 * 109.47447 * 224.72301 * 5 4 3 9 9 C 1.34773 * 120.00217 * 154.99769 * 8 5 4 10 10 O 1.21589 * 119.99780 * 359.97438 * 9 8 5 11 11 N 1.34775 * 120.00113 * 179.97438 * 9 8 5 12 12 C 1.39462 * 120.00076 * 184.45926 * 11 9 8 13 13 C 1.38639 * 119.64806 * 173.77784 * 12 11 9 14 14 C 1.40827 * 118.67470 * 180.27726 * 13 12 11 15 15 C 1.41539 * 120.99826 * 179.70348 * 14 13 12 16 16 H 1.08006 * 119.99740 * 20.94207 * 15 14 13 17 17 C 1.40025 * 120.00397 * 200.93982 * 15 14 13 18 18 N 1.30749 * 119.99583 * 13.39152 * 17 15 14 19 19 Si 1.86801 * 120.00286 * 193.39773 * 17 15 14 20 20 H 1.48503 * 109.47085 * 59.99890 * 19 17 15 21 21 H 1.48504 * 109.47106 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46924 * 299.99622 * 19 17 15 23 23 C 1.41165 * 118.00127 * 359.46891 * 14 13 12 24 24 C 1.36587 * 119.12700 * 0.55729 * 23 14 13 25 25 N 1.32068 * 121.26206 * 359.70485 * 24 23 14 26 26 N 1.30721 * 108.94887 * 359.59179 * 4 3 2 27 27 N 1.34426 * 125.96242 * 179.67054 * 2 1 3 28 28 H 0.97000 * 126.82531 * 359.97438 * 27 2 1 29 29 H 1.09005 * 109.47575 * 270.30208 * 1 2 3 30 30 H 1.08999 * 109.47439 * 30.30685 * 1 2 3 31 31 H 1.09000 * 109.47192 * 150.30229 * 1 2 3 32 32 H 1.09005 * 109.46985 * 60.00512 * 7 5 4 33 33 H 1.09005 * 109.47502 * 180.02562 * 7 5 4 34 34 H 1.09002 * 109.47684 * 300.00742 * 7 5 4 35 35 H 0.97000 * 119.99715 * 334.99119 * 8 5 4 36 36 H 0.97000 * 119.99777 * 4.45951 * 11 9 8 37 37 H 1.07998 * 120.66248 * 0.02562 * 13 12 11 38 38 H 0.97004 * 120.00031 * 179.97438 * 18 17 15 39 39 H 1.07998 * 120.43184 * 180.28039 * 23 14 13 40 40 H 1.08004 * 119.36861 * 179.71804 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2753 1.0591 0.0000 4 6 3.5552 0.6888 -0.0027 5 6 4.7372 1.6236 -0.0066 6 1 4.4065 2.6263 -0.2778 7 6 5.3679 1.6543 1.3869 8 7 5.7266 1.1557 -0.9804 9 6 6.5930 2.0277 -1.5330 10 8 6.5531 3.2029 -1.2236 11 7 7.5036 1.5972 -2.4284 12 6 8.4597 2.4799 -2.9302 13 6 9.4710 2.0023 -3.7495 14 6 10.4289 2.9106 -4.2400 15 6 11.4857 2.4754 -5.0750 16 1 11.3973 1.5458 -5.6176 17 6 12.6457 3.2501 -5.1976 18 7 12.8714 4.2265 -4.3579 19 14 13.8705 2.8886 -6.5608 20 1 13.2015 3.0335 -7.8787 21 1 15.0040 3.8441 -6.4740 22 1 14.3796 1.5013 -6.4139 23 6 10.3006 4.2690 -3.8779 24 6 9.2699 4.6458 -3.0647 25 7 8.3922 3.7658 -2.6183 26 7 3.6194 -0.6168 0.0044 27 7 2.2964 -1.0880 0.0063 28 1 2.0093 -2.0146 0.0119 29 1 -0.3634 0.0054 1.0277 30 1 -0.3634 0.8872 -0.5186 31 1 -0.3633 -0.8927 -0.5091 32 1 5.6986 0.6516 1.6582 33 1 6.2226 2.3308 1.3842 34 1 4.6317 2.0024 2.1114 35 1 5.7583 0.2182 -1.2274 36 1 7.4940 0.6733 -2.7239 37 1 9.5254 0.9540 -4.0033 38 1 13.6751 4.7630 -4.4425 39 1 11.0107 4.9999 -4.2356 40 1 9.1707 5.6833 -2.7816 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365518200.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:42 Heat of formation + Delta-G solvation = 97.085558 kcal Electronic energy + Delta-G solvation = -24862.172497 eV Core-core repulsion = 21100.100698 eV Total energy + Delta-G solvation = -3762.071799 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.50886 -39.82472 -38.08244 -35.80571 -34.33856 -33.53639 -32.81011 -32.71891 -30.59853 -30.36216 -28.32996 -28.10290 -25.96269 -24.60660 -22.34036 -21.68135 -21.36940 -20.36416 -19.99431 -18.48106 -17.86430 -17.63745 -16.29353 -16.03269 -15.48769 -15.01586 -14.78307 -14.54584 -14.34111 -14.11017 -13.84002 -13.60845 -13.37171 -13.26233 -12.99917 -12.92151 -12.34036 -12.27789 -12.15357 -11.99660 -11.45060 -11.37670 -11.20329 -10.91948 -10.43155 -10.37310 -10.34704 -9.99252 -9.83959 -9.69063 -9.49586 -9.33800 -8.89399 -7.98685 -7.65057 -6.95915 -6.72141 -4.58638 1.21887 2.25533 2.43194 2.78325 2.83801 3.00089 3.03194 3.05876 3.29202 3.63444 3.86020 3.91304 4.21087 4.40969 4.58528 4.74323 4.90391 4.95838 5.21702 5.30815 5.34384 5.63631 5.78056 5.85413 5.89118 6.00830 6.06502 6.26540 6.58237 6.60219 6.66984 6.71416 6.84370 6.95396 7.19837 7.30568 7.50109 7.62414 7.76095 7.95228 8.13991 8.37269 8.54999 8.78522 8.80349 9.17885 9.81723 10.10088 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.034002 B = 0.002268 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.281965 B =12344.288313 C =12730.026234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.283 3.717 3 N -0.529 5.529 4 C 0.231 3.769 5 C 0.260 3.740 6 H 0.116 0.884 7 C -0.157 4.157 8 N -0.747 5.747 9 C 0.695 3.305 10 O -0.526 6.526 11 N -0.669 5.669 12 C 0.368 3.632 13 C -0.309 4.309 14 C 0.144 3.856 15 C -0.451 4.451 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.786 5.786 19 Si 0.915 3.085 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.265 1.265 23 C -0.230 4.230 24 C 0.105 3.895 25 N -0.553 5.553 26 N -0.307 5.307 27 N -0.483 5.483 28 H 0.440 0.560 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.395 0.605 36 H 0.402 0.598 37 H 0.100 0.900 38 H 0.283 0.717 39 H 0.136 0.864 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.703 -11.003 7.200 22.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.004 3.996 3 N -0.259 5.259 4 C -0.053 4.053 5 C 0.152 3.848 6 H 0.134 0.866 7 C -0.216 4.216 8 N -0.406 5.406 9 C 0.395 3.605 10 O -0.396 6.396 11 N -0.317 5.317 12 C 0.139 3.861 13 C -0.336 4.336 14 C 0.135 3.865 15 C -0.482 4.482 16 H 0.098 0.902 17 C -0.144 4.144 18 N -0.411 5.411 19 Si 0.740 3.260 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.189 1.189 23 C -0.253 4.253 24 C -0.046 4.046 25 N -0.272 5.272 26 N -0.136 5.136 27 N -0.201 5.201 28 H 0.286 0.714 29 H 0.111 0.889 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.229 0.771 36 H 0.236 0.764 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.153 0.847 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -18.694 -9.392 8.151 22.453 hybrid contribution 0.927 -2.223 -1.350 2.761 sum -17.767 -11.615 6.801 22.290 Atomic orbital electron populations 1.20411 0.83446 1.05166 1.04660 1.24459 0.96719 0.82740 0.95662 1.70370 1.01106 1.29482 1.24908 1.24335 0.93401 0.90075 0.97472 1.18773 0.81217 0.95096 0.89743 0.86577 1.22179 1.01926 1.02984 0.94526 1.45180 1.36751 1.11304 1.47380 1.15980 0.79551 0.85188 0.79811 1.91034 1.71121 1.14284 1.63208 1.42547 1.31628 1.13110 1.44369 1.17738 0.87257 0.88261 0.92887 1.21121 1.02253 0.99058 1.11149 1.17587 0.89901 0.90778 0.88209 1.19549 0.98880 1.06364 1.23413 0.90221 1.25995 0.99002 0.93713 0.95707 1.69758 1.25096 1.15366 1.30875 0.86252 0.79106 0.79292 0.81396 1.18736 1.20203 1.18926 1.22178 1.00971 0.97441 1.04752 1.21638 0.91030 0.96902 0.95007 1.67209 1.29848 1.00368 1.29796 1.77958 0.96743 1.12254 1.26650 1.47994 1.04284 1.10070 1.57784 0.71428 0.88876 0.88147 0.89812 0.92168 0.90192 0.91525 0.77141 0.76381 0.88197 0.90580 0.84684 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.51 36.00 0.38 0.11 16 2 C 0.28 2.41 8.24 -155.69 -1.28 1.13 16 3 N -0.53 -6.59 11.19 -8.16 -0.09 -6.68 16 4 C 0.23 3.01 6.95 -156.85 -1.09 1.92 16 5 C 0.26 3.68 3.12 -69.09 -0.22 3.46 16 6 H 0.12 1.85 7.58 -51.92 -0.39 1.46 16 7 C -0.16 -2.01 9.47 37.15 0.35 -1.66 16 8 N -0.75 -11.16 5.07 -59.82 -0.30 -11.46 16 9 C 0.70 13.61 8.49 -86.92 -0.74 12.87 16 10 O -0.53 -12.52 14.27 5.29 0.08 -12.45 16 11 N -0.67 -13.08 5.39 -15.86 -0.09 -13.16 16 12 C 0.37 8.94 7.42 -154.68 -1.15 7.79 16 13 C -0.31 -7.62 9.74 -38.45 -0.37 -8.00 16 14 C 0.14 3.85 5.64 -106.55 -0.60 3.25 16 15 C -0.45 -11.72 9.14 -37.65 -0.34 -12.07 16 16 H 0.08 1.96 7.88 -52.48 -0.41 1.55 16 17 C 0.08 1.84 5.29 -17.34 -0.09 1.75 16 18 N -0.79 -19.88 10.56 55.55 0.59 -19.30 16 19 Si 0.92 18.17 29.58 -169.99 -5.03 13.15 16 20 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 21 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 23 C -0.23 -6.12 8.78 -39.07 -0.34 -6.46 16 24 C 0.10 2.69 11.10 -18.05 -0.20 2.49 16 25 N -0.55 -14.63 7.86 -12.76 -0.10 -14.73 16 26 N -0.31 -3.60 12.46 32.42 0.40 -3.20 16 27 N -0.48 -3.89 7.45 32.62 0.24 -3.65 16 28 H 0.44 1.80 8.96 -182.33 -1.63 0.17 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.39 5.05 8.34 -40.82 -0.34 4.71 16 36 H 0.40 6.21 8.72 -40.82 -0.36 5.85 16 37 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 38 H 0.28 6.50 8.29 -40.82 -0.34 6.16 16 39 H 0.14 3.62 5.86 -52.49 -0.31 3.32 16 40 H 0.12 2.82 8.06 -52.48 -0.42 2.40 16 LS Contribution 349.63 15.07 5.27 5.27 Total: -1.00 -35.26 349.63 -10.69 -45.95 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -5.96 Total: 13.66 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: -5.70 Total: 6.59 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: 0.65 Total: -72.17 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.08 Total: -12.45 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.26 -10.69 -45.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365518200.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.039 kcal (2) G-P(sol) polarization free energy of solvation -35.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds