Wall clock time and date at job start Tue Mar 31 2020 11:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30841 * 125.96088 * 2 1 4 4 C 1.33234 * 109.82814 * 180.12210 * 3 2 1 5 5 C 1.50701 * 125.52935 * 179.85491 * 4 3 2 6 6 H 1.09007 * 109.46489 * 344.72312 * 5 4 3 7 7 C 1.52994 * 109.47268 * 104.71473 * 5 4 3 8 8 N 1.46497 * 109.47447 * 224.72301 * 5 4 3 9 9 C 1.34773 * 120.00217 * 154.99769 * 8 5 4 10 10 O 1.21589 * 119.99780 * 359.97438 * 9 8 5 11 11 N 1.34775 * 120.00113 * 179.97438 * 9 8 5 12 12 C 1.39462 * 120.00076 * 184.45926 * 11 9 8 13 13 C 1.38639 * 119.64806 * 173.77784 * 12 11 9 14 14 C 1.40827 * 118.67470 * 180.27726 * 13 12 11 15 15 C 1.41539 * 120.99826 * 179.70348 * 14 13 12 16 16 H 1.08006 * 119.99740 * 20.94207 * 15 14 13 17 17 C 1.40025 * 120.00397 * 200.93982 * 15 14 13 18 18 N 1.30749 * 119.99583 * 13.39152 * 17 15 14 19 19 Si 1.86801 * 120.00286 * 193.39773 * 17 15 14 20 20 H 1.48503 * 109.47085 * 59.99890 * 19 17 15 21 21 H 1.48504 * 109.47106 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46924 * 299.99622 * 19 17 15 23 23 C 1.41165 * 118.00127 * 359.46891 * 14 13 12 24 24 C 1.36587 * 119.12700 * 0.55729 * 23 14 13 25 25 N 1.32068 * 121.26206 * 359.70485 * 24 23 14 26 26 N 1.30721 * 108.94887 * 359.59179 * 4 3 2 27 27 N 1.34426 * 125.96242 * 179.67054 * 2 1 3 28 28 H 0.97000 * 126.82531 * 359.97438 * 27 2 1 29 29 H 1.09005 * 109.47575 * 270.30208 * 1 2 3 30 30 H 1.08999 * 109.47439 * 30.30685 * 1 2 3 31 31 H 1.09000 * 109.47192 * 150.30229 * 1 2 3 32 32 H 1.09005 * 109.46985 * 60.00512 * 7 5 4 33 33 H 1.09005 * 109.47502 * 180.02562 * 7 5 4 34 34 H 1.09002 * 109.47684 * 300.00742 * 7 5 4 35 35 H 0.97000 * 119.99715 * 334.99119 * 8 5 4 36 36 H 0.97000 * 119.99777 * 4.45951 * 11 9 8 37 37 H 1.07998 * 120.66248 * 0.02562 * 13 12 11 38 38 H 0.97004 * 120.00031 * 179.97438 * 18 17 15 39 39 H 1.07998 * 120.43184 * 180.28039 * 23 14 13 40 40 H 1.08004 * 119.36861 * 179.71804 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2753 1.0591 0.0000 4 6 3.5552 0.6888 -0.0027 5 6 4.7372 1.6236 -0.0066 6 1 4.4065 2.6263 -0.2778 7 6 5.3679 1.6543 1.3869 8 7 5.7266 1.1557 -0.9804 9 6 6.5930 2.0277 -1.5330 10 8 6.5531 3.2029 -1.2236 11 7 7.5036 1.5972 -2.4284 12 6 8.4597 2.4799 -2.9302 13 6 9.4710 2.0023 -3.7495 14 6 10.4289 2.9106 -4.2400 15 6 11.4857 2.4754 -5.0750 16 1 11.3973 1.5458 -5.6176 17 6 12.6457 3.2501 -5.1976 18 7 12.8714 4.2265 -4.3579 19 14 13.8705 2.8886 -6.5608 20 1 13.2015 3.0335 -7.8787 21 1 15.0040 3.8441 -6.4740 22 1 14.3796 1.5013 -6.4139 23 6 10.3006 4.2690 -3.8779 24 6 9.2699 4.6458 -3.0647 25 7 8.3922 3.7658 -2.6183 26 7 3.6194 -0.6168 0.0044 27 7 2.2964 -1.0880 0.0063 28 1 2.0093 -2.0146 0.0119 29 1 -0.3634 0.0054 1.0277 30 1 -0.3634 0.8872 -0.5186 31 1 -0.3633 -0.8927 -0.5091 32 1 5.6986 0.6516 1.6582 33 1 6.2226 2.3308 1.3842 34 1 4.6317 2.0024 2.1114 35 1 5.7583 0.2182 -1.2274 36 1 7.4940 0.6733 -2.7239 37 1 9.5254 0.9540 -4.0033 38 1 13.6751 4.7630 -4.4425 39 1 11.0107 4.9999 -4.2356 40 1 9.1707 5.6833 -2.7816 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365518200.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:41 Heat of formation + Delta-G solvation = 72.322950 kcal Electronic energy + Delta-G solvation = -24863.246284 eV Core-core repulsion = 21100.100698 eV Total energy + Delta-G solvation = -3763.145586 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.30421 -41.45567 -39.88487 -37.13379 -36.11954 -35.33870 -33.73159 -33.43182 -32.55893 -31.61185 -29.86159 -28.89967 -27.91477 -25.69670 -23.88381 -23.57832 -22.34907 -21.62976 -21.34088 -19.72537 -19.64723 -18.69729 -17.86699 -17.16213 -16.85995 -16.56561 -16.25873 -16.20242 -15.91599 -15.38924 -15.13545 -14.77850 -14.67771 -14.56738 -14.17137 -14.00847 -13.70523 -13.55126 -13.18549 -13.14121 -12.86253 -12.81918 -12.77175 -12.51809 -12.05073 -11.85758 -11.48757 -11.30291 -11.22667 -11.18444 -11.16387 -10.60546 -10.25527 -9.97117 -9.59878 -8.84265 -8.59157 -6.57020 0.45330 0.86204 1.01679 1.36307 1.42117 1.54440 1.60619 1.62546 1.81878 2.20054 2.26312 2.81088 2.85077 3.13262 3.53243 3.79668 3.80451 4.08993 4.15981 4.22391 4.56641 4.70370 4.71634 4.71990 4.82945 4.86678 4.95918 4.99234 5.05231 5.11393 5.13093 5.25388 5.28273 5.37552 5.54323 5.64876 5.83778 5.99033 6.16539 6.25697 6.56522 6.80581 6.83962 6.92956 6.99662 7.57774 7.91923 8.26782 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.034002 B = 0.002268 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.281965 B =12344.288313 C =12730.026234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.291 3.709 3 N -0.569 5.569 4 C 0.218 3.782 5 C 0.261 3.739 6 H 0.093 0.907 7 C -0.146 4.146 8 N -0.725 5.725 9 C 0.696 3.304 10 O -0.571 6.571 11 N -0.658 5.658 12 C 0.366 3.634 13 C -0.318 4.318 14 C 0.115 3.885 15 C -0.476 4.476 16 H 0.088 0.912 17 C 0.033 3.967 18 N -0.813 5.813 19 Si 0.993 3.007 20 H -0.259 1.259 21 H -0.268 1.268 22 H -0.256 1.256 23 C -0.250 4.250 24 C 0.098 3.902 25 N -0.579 5.579 26 N -0.321 5.321 27 N -0.468 5.468 28 H 0.458 0.542 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.409 0.591 36 H 0.422 0.578 37 H 0.123 0.877 38 H 0.292 0.708 39 H 0.127 0.873 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.681 -13.364 6.832 24.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.014 3.986 3 N -0.300 5.300 4 C -0.066 4.066 5 C 0.153 3.847 6 H 0.111 0.889 7 C -0.206 4.206 8 N -0.383 5.383 9 C 0.395 3.605 10 O -0.444 6.444 11 N -0.307 5.307 12 C 0.137 3.863 13 C -0.344 4.344 14 C 0.106 3.894 15 C -0.507 4.507 16 H 0.106 0.894 17 C -0.184 4.184 18 N -0.438 5.438 19 Si 0.813 3.187 20 H -0.183 1.183 21 H -0.192 1.192 22 H -0.180 1.180 23 C -0.273 4.273 24 C -0.052 4.052 25 N -0.300 5.300 26 N -0.152 5.152 27 N -0.189 5.189 28 H 0.308 0.692 29 H 0.131 0.869 30 H 0.117 0.883 31 H 0.134 0.866 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.245 0.755 36 H 0.260 0.740 37 H 0.140 0.860 38 H 0.103 0.897 39 H 0.144 0.856 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.734 -11.854 7.807 24.309 hybrid contribution 1.103 -1.555 -1.172 2.238 sum -18.631 -13.410 6.635 23.895 Atomic orbital electron populations 1.20683 0.79799 1.06642 1.06300 1.25290 0.98333 0.81735 0.93259 1.70333 1.01229 1.31662 1.26778 1.23927 0.93292 0.90287 0.99064 1.18696 0.81675 0.94560 0.89812 0.88912 1.22067 1.01368 1.02971 0.94172 1.44928 1.35563 1.11271 1.46578 1.16083 0.79760 0.85054 0.79579 1.91007 1.72399 1.16459 1.64575 1.42363 1.30715 1.13498 1.44151 1.17970 0.87838 0.88199 0.92327 1.21304 1.02007 0.99913 1.11169 1.18016 0.91067 0.91313 0.88964 1.19893 0.99514 1.07329 1.23921 0.89391 1.26960 1.00586 0.93053 0.97795 1.69815 1.26016 1.15884 1.32117 0.85080 0.76415 0.79506 0.77684 1.18295 1.19207 1.18037 1.22152 1.01488 0.97628 1.06053 1.21897 0.90801 0.97783 0.94717 1.67304 1.30403 1.01485 1.30766 1.77841 0.98948 1.11530 1.26842 1.47919 1.02999 1.11140 1.56818 0.69200 0.86937 0.88341 0.86637 0.91208 0.92370 0.90048 0.75532 0.74037 0.85956 0.89659 0.85569 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.29 10.51 71.23 0.75 0.46 16 2 C 0.29 4.33 8.24 138.22 1.14 5.47 16 3 N -0.57 -13.68 11.19 -179.73 -2.01 -15.70 16 4 C 0.22 5.54 6.95 138.63 0.96 6.50 16 5 C 0.26 7.45 3.12 44.24 0.14 7.59 16 6 H 0.09 3.10 7.58 -2.38 -0.02 3.09 16 7 C -0.15 -3.77 9.47 71.98 0.68 -3.09 16 8 N -0.72 -21.54 5.07 -461.42 -2.34 -23.88 16 9 C 0.70 27.54 8.49 179.06 1.52 29.06 16 10 O -0.57 -27.99 14.27 -4.00 -0.06 -28.05 16 11 N -0.66 -25.63 5.39 -322.36 -1.74 -27.37 16 12 C 0.37 18.03 7.42 132.76 0.98 19.01 16 13 C -0.32 -15.76 9.74 23.00 0.22 -15.53 16 14 C 0.11 6.27 5.64 -21.11 -0.12 6.15 16 15 C -0.48 -24.84 9.14 23.52 0.22 -24.63 16 16 H 0.09 4.29 7.88 -2.91 -0.02 4.27 16 17 C 0.03 1.61 5.29 85.29 0.45 2.06 16 18 N -0.81 -41.45 10.56 21.84 0.23 -41.22 16 19 Si 0.99 36.42 29.58 68.60 2.03 38.45 16 20 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 21 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 22 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 23 C -0.25 -13.70 8.78 22.60 0.20 -13.51 16 24 C 0.10 5.23 11.10 84.27 0.94 6.16 16 25 N -0.58 -31.44 7.86 -194.27 -1.53 -32.96 16 26 N -0.32 -7.03 12.46 -51.33 -0.64 -7.67 16 27 N -0.47 -6.40 7.45 -50.71 -0.38 -6.77 16 28 H 0.46 2.36 8.96 -213.10 -1.91 0.45 16 29 H 0.11 0.08 8.14 -2.38 -0.02 0.06 16 30 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16 32 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.41 10.03 8.34 -92.71 -0.77 9.26 16 36 H 0.42 12.58 8.72 -92.71 -0.81 11.77 16 37 H 0.12 5.33 8.06 -2.91 -0.02 5.31 16 38 H 0.29 13.39 8.29 -92.71 -0.77 12.62 16 39 H 0.13 7.03 5.86 -2.91 -0.02 7.02 16 40 H 0.14 6.56 8.06 -2.91 -0.02 6.53 16 Total: -1.00 -78.51 349.63 -0.71 -79.22 By element: Atomic # 1 Polarization: 42.61 SS G_CDS: -2.36 Total: 40.25 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: 8.08 Total: 25.71 kcal Atomic # 7 Polarization: -147.17 SS G_CDS: -8.40 Total: -155.58 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.06 Total: -28.05 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 2.03 Total: 38.45 kcal Total: -78.51 -0.71 -79.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365518200.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.545 kcal (2) G-P(sol) polarization free energy of solvation -78.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds