Wall clock time and date at job start Tue Mar 31 2020 11:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30517 * 126.34693 * 2 1 4 4 N 1.28600 * 109.67096 * 179.97438 * 3 2 1 5 5 C 1.30516 * 109.67644 * 0.02562 * 4 3 2 6 6 C 1.50694 * 126.34964 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.46864 * 90.02709 * 6 5 4 8 8 C 1.34781 * 119.99821 * 180.02562 * 7 6 5 9 9 O 1.21580 * 119.99982 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99740 * 180.02562 * 8 7 6 11 11 C 1.39465 * 119.99978 * 184.49473 * 10 8 7 12 12 C 1.38640 * 119.64853 * 174.66041 * 11 10 8 13 13 C 1.40826 * 118.67163 * 179.97438 * 12 11 10 14 14 C 1.41540 * 120.99441 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99931 * 149.67079 * 14 13 12 16 16 C 1.40035 * 120.00074 * 329.66421 * 14 13 12 17 17 N 1.30743 * 119.99704 * 167.49222 * 16 14 13 18 18 Si 1.86800 * 119.99979 * 347.49265 * 16 14 13 19 19 H 1.48506 * 109.46901 * 92.50693 * 18 16 14 20 20 H 1.48503 * 109.46993 * 212.50263 * 18 16 14 21 21 H 1.48495 * 109.47225 * 332.50655 * 18 16 14 22 22 C 1.41155 * 118.00561 * 359.97438 * 13 12 11 23 23 C 1.36596 * 119.12986 * 0.02562 * 22 13 12 24 24 N 1.32072 * 121.25595 * 359.74042 * 23 22 13 25 25 N 1.35497 * 126.34295 * 180.27231 * 2 1 3 26 26 C 1.46494 * 126.98297 * 0.02562 * 25 2 1 27 27 H 1.08998 * 109.46756 * 89.97013 * 1 2 3 28 28 H 1.09002 * 109.47201 * 209.97132 * 1 2 3 29 29 H 1.08996 * 109.47016 * 329.97578 * 1 2 3 30 30 H 1.08998 * 109.47291 * 330.02656 * 6 5 4 31 31 H 1.09002 * 109.47618 * 210.02646 * 6 5 4 32 32 H 0.96999 * 120.00108 * 359.97438 * 7 6 5 33 33 H 0.96999 * 120.00087 * 4.76573 * 10 8 7 34 34 H 1.08000 * 120.66261 * 359.97438 * 12 11 10 35 35 H 0.97001 * 119.99411 * 180.02562 * 17 16 14 36 36 H 1.08000 * 120.44181 * 179.97438 * 22 13 12 37 37 H 1.08005 * 119.37090 * 179.97438 * 23 22 13 38 38 H 1.08996 * 109.47251 * 270.15298 * 26 25 2 39 39 H 1.08993 * 109.47229 * 30.15524 * 26 25 2 40 40 H 1.09002 * 109.47052 * 150.15502 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2806 1.0512 0.0000 4 7 3.5125 0.6822 0.0005 5 6 3.5808 -0.6212 0.0004 6 6 4.8396 -1.4496 0.0003 7 7 5.2471 -1.7187 1.3815 8 6 6.3542 -2.4469 1.6278 9 8 7.0144 -2.8807 0.7036 10 7 6.7287 -2.6950 2.8985 11 6 7.9234 -3.3674 3.1547 12 6 8.3570 -3.5211 4.4625 13 6 9.5660 -4.2040 4.6977 14 6 10.0549 -4.3886 6.0131 15 1 10.6460 -5.2603 6.2521 16 6 9.7722 -3.4409 7.0045 17 7 10.0058 -3.7193 8.2605 18 14 9.0614 -1.7791 6.5327 19 1 7.5788 -1.8399 6.5925 20 1 9.5529 -0.7442 7.4775 21 1 9.4873 -1.4323 5.1531 22 6 10.2754 -4.6989 3.5823 23 6 9.7687 -4.4987 2.3297 24 7 8.6289 -3.8573 2.1460 25 7 2.3100 -1.0914 -0.0052 26 6 1.8897 -2.4947 -0.0124 27 1 -0.3633 0.0005 -1.0277 28 1 -0.3634 -0.8903 0.5134 29 1 -0.3633 0.8897 0.5142 30 1 5.6325 -0.9056 -0.5130 31 1 4.6541 -2.3925 -0.5141 32 1 4.7205 -1.3723 2.1188 33 1 6.1655 -2.4093 3.6347 34 1 7.7792 -3.1251 5.2845 35 1 9.8096 -3.0630 8.9472 36 1 11.2071 -5.2282 3.7172 37 1 10.3086 -4.8754 1.4734 38 1 1.7824 -2.8472 1.0134 39 1 0.9344 -2.5852 -0.5294 40 1 2.6395 -3.0960 -0.5266 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365518519.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:55 Heat of formation + Delta-G solvation = 98.234751 kcal Electronic energy + Delta-G solvation = -25173.928233 eV Core-core repulsion = 21411.906266 eV Total energy + Delta-G solvation = -3762.021966 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.53603 -40.08525 -38.38401 -35.69778 -35.14133 -34.34167 -33.82684 -32.60121 -31.31388 -29.62930 -28.51873 -27.84211 -26.34707 -25.92613 -22.40090 -22.15555 -21.54594 -21.18854 -20.23389 -18.59364 -17.80633 -17.26845 -16.96687 -16.41986 -15.65373 -15.52672 -15.00069 -14.86930 -14.70617 -14.42439 -14.11388 -14.06665 -13.68554 -13.41893 -13.36950 -13.11947 -13.07684 -12.93509 -12.88950 -12.51484 -11.83219 -11.63652 -10.99460 -10.86210 -10.70457 -10.67328 -10.59485 -10.11683 -10.03292 -9.79800 -9.46422 -9.37485 -9.15187 -8.24481 -7.91392 -7.29908 -7.06651 -4.76227 1.25010 1.98869 2.36296 2.37870 2.60863 2.93178 2.99677 3.12298 3.24331 3.58665 3.79480 3.87193 3.95471 4.10905 4.29190 4.43662 4.53045 4.57070 4.78132 4.83041 4.92946 5.22467 5.27220 5.38800 5.45789 5.56679 5.66879 5.75741 6.19330 6.25174 6.32981 6.37870 6.40280 6.53493 6.86666 6.98023 7.13649 7.25046 7.61524 7.88367 8.08607 8.19285 8.38020 8.41123 8.63300 8.86157 9.43750 9.94748 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.019841 B = 0.002881 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.903981 B = 9716.067629 C =10523.698507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.176 3.824 3 N -0.293 5.293 4 N -0.270 5.270 5 C 0.156 3.844 6 C 0.234 3.766 7 N -0.751 5.751 8 C 0.698 3.302 9 O -0.524 6.524 10 N -0.670 5.670 11 C 0.386 3.614 12 C -0.322 4.322 13 C 0.129 3.871 14 C -0.436 4.436 15 H 0.096 0.904 16 C 0.084 3.916 17 N -0.803 5.803 18 Si 0.918 3.082 19 H -0.272 1.272 20 H -0.291 1.291 21 H -0.244 1.244 22 C -0.270 4.270 23 C 0.129 3.871 24 N -0.553 5.553 25 N -0.467 5.467 26 C 0.068 3.932 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.394 0.606 33 H 0.405 0.595 34 H 0.108 0.892 35 H 0.288 0.712 36 H 0.110 0.890 37 H 0.130 0.870 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.459 3.283 -11.364 22.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.091 4.091 3 N -0.135 5.135 4 N -0.111 5.111 5 C -0.111 4.111 6 C 0.108 3.892 7 N -0.411 5.411 8 C 0.397 3.603 9 O -0.394 6.394 10 N -0.318 5.318 11 C 0.158 3.842 12 C -0.348 4.348 13 C 0.120 3.880 14 C -0.467 4.467 15 H 0.114 0.886 16 C -0.136 4.136 17 N -0.428 5.428 18 Si 0.746 3.254 19 H -0.199 1.199 20 H -0.219 1.219 21 H -0.167 1.167 22 C -0.293 4.293 23 C -0.022 4.022 24 N -0.272 5.272 25 N -0.159 5.159 26 C -0.075 4.075 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.103 0.897 32 H 0.227 0.773 33 H 0.239 0.761 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.147 0.853 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.692 4.439 -12.892 23.137 hybrid contribution -1.019 -0.451 1.733 2.061 sum -19.711 3.989 -11.159 22.999 Atomic orbital electron populations 1.20239 0.83552 1.04711 1.04110 1.24932 0.97180 0.82835 1.04182 1.74331 0.96333 1.23841 1.18990 1.74330 1.12172 1.07859 1.16711 1.24725 0.86750 0.92711 1.06906 1.19187 0.88882 0.97078 0.84099 1.45121 1.29305 1.59080 1.07558 1.15916 0.80764 0.79678 0.83942 1.91047 1.53036 1.53255 1.42083 1.42593 1.22863 1.59588 1.06719 1.17725 0.85241 0.91556 0.89728 1.21198 1.01797 1.18034 0.93794 1.17696 0.88903 0.87669 0.93694 1.19508 1.28493 1.07826 0.90839 0.88624 1.26191 0.92172 1.01168 0.94051 1.69613 1.35921 1.36166 1.01073 0.86218 0.78885 0.80107 0.80233 1.19850 1.21878 1.16720 1.21689 1.02558 1.11939 0.93130 1.21632 0.91007 0.93926 0.95656 1.67299 1.09373 1.18050 1.32519 1.46057 1.06585 1.09053 1.54157 1.22204 1.02985 0.77619 1.04698 0.89501 0.90322 0.88484 0.87859 0.89667 0.77252 0.76107 0.87458 0.90187 0.87159 0.85296 0.89527 0.88781 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.06 36.01 0.36 0.06 16 2 C 0.18 1.63 8.03 -154.98 -1.24 0.38 16 3 N -0.29 -3.91 12.21 32.80 0.40 -3.51 16 4 N -0.27 -3.84 12.21 32.80 0.40 -3.44 16 5 C 0.16 1.75 7.40 -154.98 -1.15 0.60 16 6 C 0.23 2.63 6.02 -5.20 -0.03 2.60 16 7 N -0.75 -9.42 5.55 -66.42 -0.37 -9.79 16 8 C 0.70 12.17 8.52 -86.91 -0.74 11.43 16 9 O -0.52 -11.24 14.60 5.30 0.08 -11.16 16 10 N -0.67 -12.16 5.40 -15.86 -0.09 -12.25 16 11 C 0.39 8.73 7.42 -154.68 -1.15 7.58 16 12 C -0.32 -7.56 6.96 -38.45 -0.27 -7.83 16 13 C 0.13 3.21 5.17 -106.55 -0.55 2.65 16 14 C -0.44 -11.38 9.67 -37.65 -0.36 -11.75 16 15 H 0.10 2.59 8.06 -52.49 -0.42 2.17 16 16 C 0.08 2.13 5.48 -17.34 -0.10 2.04 16 17 N -0.80 -20.61 13.92 55.55 0.77 -19.84 16 18 Si 0.92 20.23 24.43 -169.99 -4.15 16.08 16 19 H -0.27 -5.61 6.67 56.52 0.38 -5.23 16 20 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 21 H -0.24 -5.67 6.66 56.52 0.38 -5.30 16 22 C -0.27 -6.21 9.85 -39.07 -0.38 -6.59 16 23 C 0.13 2.89 11.10 -18.04 -0.20 2.68 16 24 N -0.55 -13.21 7.86 -12.75 -0.10 -13.31 16 25 N -0.47 -3.91 3.15 -118.01 -0.37 -4.28 16 26 C 0.07 0.28 10.71 59.84 0.64 0.92 16 27 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.08 0.18 7.87 -51.93 -0.41 -0.23 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.09 0.84 7.21 -51.93 -0.37 0.46 16 32 H 0.39 4.18 8.48 -40.82 -0.35 3.84 16 33 H 0.40 5.90 8.71 -40.82 -0.36 5.55 16 34 H 0.11 2.41 4.42 -52.49 -0.23 2.18 16 35 H 0.29 6.67 8.29 -40.82 -0.34 6.33 16 36 H 0.11 2.33 8.06 -52.49 -0.42 1.91 16 37 H 0.13 2.47 8.06 -52.48 -0.42 2.05 16 38 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.09 0.16 7.82 -51.93 -0.41 -0.24 16 40 H 0.10 0.37 7.19 -51.93 -0.37 0.00 16 LS Contribution 342.90 15.07 5.17 5.17 Total: -1.00 -35.24 342.90 -8.07 -43.31 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -4.64 Total: 8.24 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: -5.17 Total: 4.78 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: 0.65 Total: -66.41 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.15 Total: 16.08 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.24 -8.07 -43.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365518519.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.548 kcal (2) G-P(sol) polarization free energy of solvation -35.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds