Wall clock time and date at job start Tue Mar 31 2020 11:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30517 * 126.34693 * 2 1 4 4 N 1.28600 * 109.67096 * 179.97438 * 3 2 1 5 5 C 1.30516 * 109.67644 * 0.02562 * 4 3 2 6 6 C 1.50694 * 126.34964 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.46864 * 90.02709 * 6 5 4 8 8 C 1.34781 * 119.99821 * 180.02562 * 7 6 5 9 9 O 1.21580 * 119.99982 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99740 * 180.02562 * 8 7 6 11 11 C 1.39465 * 119.99978 * 184.49473 * 10 8 7 12 12 C 1.38640 * 119.64853 * 174.66041 * 11 10 8 13 13 C 1.40826 * 118.67163 * 179.97438 * 12 11 10 14 14 C 1.41540 * 120.99441 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99931 * 149.67079 * 14 13 12 16 16 C 1.40035 * 120.00074 * 329.66421 * 14 13 12 17 17 N 1.30743 * 119.99704 * 167.49222 * 16 14 13 18 18 Si 1.86800 * 119.99979 * 347.49265 * 16 14 13 19 19 H 1.48506 * 109.46901 * 92.50693 * 18 16 14 20 20 H 1.48503 * 109.46993 * 212.50263 * 18 16 14 21 21 H 1.48495 * 109.47225 * 332.50655 * 18 16 14 22 22 C 1.41155 * 118.00561 * 359.97438 * 13 12 11 23 23 C 1.36596 * 119.12986 * 0.02562 * 22 13 12 24 24 N 1.32072 * 121.25595 * 359.74042 * 23 22 13 25 25 N 1.35497 * 126.34295 * 180.27231 * 2 1 3 26 26 C 1.46494 * 126.98297 * 0.02562 * 25 2 1 27 27 H 1.08998 * 109.46756 * 89.97013 * 1 2 3 28 28 H 1.09002 * 109.47201 * 209.97132 * 1 2 3 29 29 H 1.08996 * 109.47016 * 329.97578 * 1 2 3 30 30 H 1.08998 * 109.47291 * 330.02656 * 6 5 4 31 31 H 1.09002 * 109.47618 * 210.02646 * 6 5 4 32 32 H 0.96999 * 120.00108 * 359.97438 * 7 6 5 33 33 H 0.96999 * 120.00087 * 4.76573 * 10 8 7 34 34 H 1.08000 * 120.66261 * 359.97438 * 12 11 10 35 35 H 0.97001 * 119.99411 * 180.02562 * 17 16 14 36 36 H 1.08000 * 120.44181 * 179.97438 * 22 13 12 37 37 H 1.08005 * 119.37090 * 179.97438 * 23 22 13 38 38 H 1.08996 * 109.47251 * 270.15298 * 26 25 2 39 39 H 1.08993 * 109.47229 * 30.15524 * 26 25 2 40 40 H 1.09002 * 109.47052 * 150.15502 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2806 1.0512 0.0000 4 7 3.5125 0.6822 0.0005 5 6 3.5808 -0.6212 0.0004 6 6 4.8396 -1.4496 0.0003 7 7 5.2471 -1.7187 1.3815 8 6 6.3542 -2.4469 1.6278 9 8 7.0144 -2.8807 0.7036 10 7 6.7287 -2.6950 2.8985 11 6 7.9234 -3.3674 3.1547 12 6 8.3570 -3.5211 4.4625 13 6 9.5660 -4.2040 4.6977 14 6 10.0549 -4.3886 6.0131 15 1 10.6460 -5.2603 6.2521 16 6 9.7722 -3.4409 7.0045 17 7 10.0058 -3.7193 8.2605 18 14 9.0614 -1.7791 6.5327 19 1 7.5788 -1.8399 6.5925 20 1 9.5529 -0.7442 7.4775 21 1 9.4873 -1.4323 5.1531 22 6 10.2754 -4.6989 3.5823 23 6 9.7687 -4.4987 2.3297 24 7 8.6289 -3.8573 2.1460 25 7 2.3100 -1.0914 -0.0052 26 6 1.8897 -2.4947 -0.0124 27 1 -0.3633 0.0005 -1.0277 28 1 -0.3634 -0.8903 0.5134 29 1 -0.3633 0.8897 0.5142 30 1 5.6325 -0.9056 -0.5130 31 1 4.6541 -2.3925 -0.5141 32 1 4.7205 -1.3723 2.1188 33 1 6.1655 -2.4093 3.6347 34 1 7.7792 -3.1251 5.2845 35 1 9.8096 -3.0630 8.9472 36 1 11.2071 -5.2282 3.7172 37 1 10.3086 -4.8754 1.4734 38 1 1.7824 -2.8472 1.0134 39 1 0.9344 -2.5852 -0.5294 40 1 2.6395 -3.0960 -0.5266 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365518519.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:54 Heat of formation + Delta-G solvation = 73.290809 kcal Electronic energy + Delta-G solvation = -25175.009883 eV Core-core repulsion = 21411.906266 eV Total energy + Delta-G solvation = -3763.103617 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.29680 -41.58784 -40.03766 -36.67371 -36.15626 -35.84411 -35.57873 -33.40191 -33.15502 -30.94878 -29.53942 -28.32400 -27.93216 -27.16799 -24.19327 -23.60390 -22.34317 -21.94605 -21.80076 -20.01018 -19.48662 -18.31000 -17.71792 -17.70274 -17.29019 -16.75935 -16.50064 -16.26855 -15.99052 -15.54167 -15.47097 -14.85328 -14.82568 -14.70119 -14.64843 -14.44178 -13.95252 -13.76741 -13.45341 -13.44266 -13.32340 -12.77071 -12.66772 -12.63707 -12.60470 -11.85482 -11.63699 -11.45944 -11.45222 -11.21999 -11.17413 -10.32448 -10.27303 -10.12075 -9.69753 -9.00153 -8.95454 -6.72865 0.48091 0.60358 0.76559 1.22561 1.31446 1.38861 1.47020 1.48606 1.82628 2.07986 2.13805 2.70005 2.96094 3.08435 3.44006 3.54226 3.72170 3.79694 3.98068 4.18600 4.31182 4.40691 4.47810 4.60673 4.61860 4.65222 4.67953 4.74936 4.76448 4.90333 4.93789 5.11135 5.12530 5.18300 5.28960 5.51250 5.62233 5.77250 5.81580 6.10293 6.27022 6.52017 6.68971 6.77425 7.43222 7.58377 7.72097 8.10623 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.019841 B = 0.002881 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.903981 B = 9716.067629 C =10523.698507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.188 3.812 3 N -0.344 5.344 4 N -0.314 5.314 5 C 0.154 3.846 6 C 0.240 3.760 7 N -0.728 5.728 8 C 0.701 3.299 9 O -0.564 6.564 10 N -0.663 5.663 11 C 0.385 3.615 12 C -0.328 4.328 13 C 0.114 3.886 14 C -0.466 4.466 15 H 0.068 0.932 16 C 0.052 3.948 17 N -0.837 5.837 18 Si 0.967 3.033 19 H -0.245 1.245 20 H -0.280 1.280 21 H -0.263 1.263 22 C -0.280 4.280 23 C 0.130 3.870 24 N -0.569 5.569 25 N -0.460 5.460 26 C 0.057 3.943 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.407 0.593 33 H 0.421 0.579 34 H 0.117 0.883 35 H 0.298 0.702 36 H 0.122 0.878 37 H 0.161 0.839 38 H 0.099 0.901 39 H 0.124 0.876 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.353 3.532 -12.331 25.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.080 4.080 3 N -0.185 5.185 4 N -0.155 5.155 5 C -0.115 4.115 6 C 0.113 3.887 7 N -0.387 5.387 8 C 0.400 3.600 9 O -0.437 6.437 10 N -0.312 5.312 11 C 0.155 3.845 12 C -0.353 4.353 13 C 0.105 3.895 14 C -0.497 4.497 15 H 0.086 0.914 16 C -0.164 4.164 17 N -0.462 5.462 18 Si 0.791 3.209 19 H -0.170 1.170 20 H -0.207 1.207 21 H -0.188 1.188 22 C -0.303 4.303 23 C -0.021 4.021 24 N -0.289 5.289 25 N -0.151 5.151 26 C -0.083 4.083 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.242 0.758 33 H 0.259 0.741 34 H 0.135 0.865 35 H 0.109 0.891 36 H 0.140 0.860 37 H 0.178 0.822 38 H 0.117 0.883 39 H 0.142 0.858 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -21.663 4.697 -13.830 26.127 hybrid contribution -0.201 -0.590 1.900 2.000 sum -21.864 4.107 -11.930 25.244 Atomic orbital electron populations 1.20502 0.80116 1.06204 1.05684 1.25751 0.98798 0.82136 1.01327 1.74236 0.96551 1.26069 1.21625 1.74214 1.13322 1.09642 1.18340 1.24483 0.87707 0.92037 1.07247 1.19175 0.88709 0.97772 0.82998 1.44858 1.27696 1.57359 1.08790 1.15951 0.81317 0.79671 0.83060 1.91023 1.54645 1.54987 1.43091 1.42469 1.21832 1.58992 1.07911 1.17900 0.86238 0.91112 0.89245 1.21279 1.01485 1.17951 0.94633 1.17897 0.89672 0.88257 0.93634 1.19486 1.29943 1.08044 0.92226 0.91401 1.26805 0.92297 1.03565 0.93783 1.69629 1.37160 1.37588 1.01853 0.85479 0.79915 0.76663 0.78834 1.16956 1.20690 1.18783 1.21886 1.03134 1.12153 0.93160 1.22116 0.90694 0.92950 0.96367 1.67446 1.09961 1.18318 1.33144 1.46249 1.05347 1.10519 1.52935 1.22602 1.04565 0.75095 1.06074 0.87716 0.87397 0.88405 0.89307 0.87803 0.75753 0.74097 0.86515 0.89149 0.86043 0.82231 0.88279 0.85759 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.06 71.24 0.72 0.35 16 2 C 0.19 3.06 8.03 137.98 1.11 4.17 16 3 N -0.34 -8.94 12.21 -50.15 -0.61 -9.56 16 4 N -0.31 -8.85 12.21 -50.16 -0.61 -9.46 16 5 C 0.15 3.23 7.40 137.97 1.02 4.25 16 6 C 0.24 5.02 6.02 85.63 0.52 5.54 16 7 N -0.73 -16.79 5.55 -482.31 -2.68 -19.46 16 8 C 0.70 23.16 8.52 179.05 1.53 24.69 16 9 O -0.56 -23.45 14.60 -3.97 -0.06 -23.51 16 10 N -0.66 -22.69 5.40 -322.36 -1.74 -24.43 16 11 C 0.39 16.86 7.42 132.76 0.98 17.84 16 12 C -0.33 -15.06 6.96 23.00 0.16 -14.90 16 13 C 0.11 5.68 5.17 -21.12 -0.11 5.58 16 14 C -0.47 -24.97 9.67 23.52 0.23 -24.74 16 15 H 0.07 3.88 8.06 -2.91 -0.02 3.85 16 16 C 0.05 2.67 5.48 85.29 0.47 3.14 16 17 N -0.84 -43.42 13.92 21.84 0.30 -43.12 16 18 Si 0.97 40.81 24.43 68.60 1.68 42.48 16 19 H -0.24 -9.17 6.67 99.48 0.66 -8.51 16 20 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.26 -11.91 6.66 99.48 0.66 -11.24 16 22 C -0.28 -12.84 9.85 22.60 0.22 -12.61 16 23 C 0.13 5.66 11.10 84.27 0.94 6.59 16 24 N -0.57 -26.44 7.86 -194.26 -1.53 -27.97 16 25 N -0.46 -6.50 3.15 -527.27 -1.66 -8.16 16 26 C 0.06 0.26 10.71 127.77 1.37 1.63 16 27 H 0.10 0.26 8.14 -2.39 -0.02 0.25 16 28 H 0.11 -0.02 7.87 -2.39 -0.02 -0.04 16 29 H 0.10 0.57 8.14 -2.39 -0.02 0.56 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 31 H 0.10 1.82 7.21 -2.39 -0.02 1.80 16 32 H 0.41 7.63 8.48 -92.71 -0.79 6.84 16 33 H 0.42 11.16 8.71 -92.71 -0.81 10.35 16 34 H 0.12 5.04 4.42 -2.91 -0.01 5.03 16 35 H 0.30 13.80 8.29 -92.71 -0.77 13.03 16 36 H 0.12 5.16 8.06 -2.91 -0.02 5.13 16 37 H 0.16 5.80 8.06 -2.91 -0.02 5.78 16 38 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.12 -0.17 7.82 -2.39 -0.02 -0.18 16 40 H 0.10 0.43 7.19 -2.39 -0.02 0.41 16 Total: -1.00 -78.40 342.90 1.67 -76.72 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -0.56 Total: 24.94 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 9.14 Total: 21.52 kcal Atomic # 7 Polarization: -133.63 SS G_CDS: -8.52 Total: -142.16 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.06 Total: -23.51 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.68 Total: 42.48 kcal Total: -78.40 1.67 -76.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365518519.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.015 kcal (2) G-P(sol) polarization free energy of solvation -78.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds