Wall clock time and date at job start Tue Mar 31 2020 11:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30520 * 126.34506 * 2 1 4 4 N 1.28599 * 109.66759 * 180.02562 * 3 2 1 5 5 C 1.30512 * 109.67682 * 359.97438 * 4 3 2 6 6 C 1.50699 * 126.34594 * 179.97438 * 5 4 3 7 7 N 1.46504 * 109.47462 * 90.02765 * 6 5 4 8 8 S 1.65590 * 120.00159 * 164.99882 * 7 6 5 9 9 O 1.42109 * 104.27696 * 181.06788 * 8 7 6 10 10 O 1.42098 * 104.28243 * 308.92825 * 8 7 6 11 11 C 1.81395 * 104.45113 * 65.00057 * 8 7 6 12 12 C 1.52998 * 109.47410 * 179.97438 * 11 8 7 13 13 C 1.52994 * 109.47287 * 299.99787 * 12 11 8 14 14 C 1.53007 * 109.46817 * 60.00009 * 12 11 8 15 15 C 1.50704 * 109.47508 * 179.97438 * 12 11 8 16 16 H 1.08005 * 119.99579 * 357.69026 * 15 12 11 17 17 C 1.37871 * 120.00280 * 177.69905 * 15 12 11 18 18 N 1.31516 * 120.00194 * 6.58043 * 17 15 12 19 19 Si 1.86804 * 120.00167 * 186.58213 * 17 15 12 20 20 H 1.48498 * 109.47308 * 84.98899 * 19 17 15 21 21 H 1.48496 * 109.47143 * 204.99668 * 19 17 15 22 22 H 1.48510 * 109.46815 * 324.99310 * 19 17 15 23 23 N 1.35492 * 107.30843 * 0.22609 * 5 4 3 24 24 C 1.46507 * 126.98239 * 179.77247 * 23 5 4 25 25 H 1.08994 * 109.47172 * 89.97202 * 1 2 3 26 26 H 1.09005 * 109.46643 * 209.97793 * 1 2 3 27 27 H 1.08999 * 109.46911 * 329.97008 * 1 2 3 28 28 H 1.09005 * 109.47312 * 210.02471 * 6 5 4 29 29 H 1.08997 * 109.47481 * 330.02377 * 6 5 4 30 30 H 0.97006 * 119.99374 * 344.99878 * 7 6 5 31 31 H 1.09000 * 109.47508 * 299.99752 * 11 8 7 32 32 H 1.09000 * 109.47736 * 59.99697 * 11 8 7 33 33 H 1.09007 * 109.46966 * 66.66880 * 13 12 11 34 34 H 1.09002 * 109.47346 * 186.66244 * 13 12 11 35 35 H 1.08992 * 109.47338 * 306.66843 * 13 12 11 36 36 H 1.09000 * 109.46957 * 60.00538 * 14 12 11 37 37 H 1.09007 * 109.46580 * 179.97438 * 14 12 11 38 38 H 1.08992 * 109.47142 * 299.99814 * 14 12 11 39 39 H 0.96994 * 120.00316 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.47035 * 90.00200 * 24 23 5 41 41 H 1.08994 * 109.46719 * 210.00362 * 24 23 5 42 42 H 1.09004 * 109.46871 * 330.00000 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2806 1.0513 0.0000 4 7 3.5125 0.6822 -0.0005 5 6 3.5808 -0.6211 -0.0004 6 6 4.8396 -1.4495 -0.0014 7 7 5.2486 -1.7183 1.3795 8 16 6.3662 -2.8980 1.6973 9 8 6.4911 -2.8903 3.1129 10 8 5.8741 -4.0411 1.0116 11 6 7.8916 -2.2976 0.9206 12 6 9.0135 -3.3128 1.1478 13 6 9.2426 -3.4921 2.6498 14 6 8.6197 -4.6551 0.5280 15 6 10.2806 -2.8142 0.5019 16 1 10.2761 -1.8861 -0.0503 17 6 11.4453 -3.5430 0.6159 18 7 11.4244 -4.7332 1.1751 19 14 13.0534 -2.8400 -0.0239 20 1 13.6625 -1.9719 1.0156 21 1 13.9843 -3.9502 -0.3494 22 1 12.7917 -2.0388 -1.2466 23 7 2.3101 -1.0913 -0.0048 24 6 1.8897 -2.4948 -0.0109 25 1 -0.3633 0.0005 -1.0276 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8897 0.5143 28 1 4.6536 -2.3926 -0.5153 29 1 5.6320 -0.9057 -0.5157 30 1 4.8645 -1.2051 2.1076 31 1 7.7284 -2.1694 -0.1495 32 1 8.1723 -1.3415 1.3623 33 1 8.3673 -3.9634 3.0971 34 1 10.1170 -4.1225 2.8113 35 1 9.4064 -2.5183 3.1112 36 1 8.4567 -4.5273 -0.5421 37 1 9.4193 -5.3783 0.6895 38 1 7.7033 -5.0159 0.9948 39 1 12.2439 -5.2458 1.2556 40 1 1.7833 -2.8467 1.0152 41 1 0.9340 -2.5855 -0.5271 42 1 2.6391 -3.0963 -0.5255 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414210638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:57 Heat of formation + Delta-G solvation = 4.425034 kcal Electronic energy + Delta-G solvation = -25156.479303 eV Core-core repulsion = 21493.540642 eV Total energy + Delta-G solvation = -3662.938661 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.41128 -36.71347 -36.32998 -35.90917 -35.41015 -35.22237 -32.41486 -31.70691 -28.79624 -27.71864 -26.70252 -26.00186 -25.76467 -25.24720 -21.57948 -21.17798 -19.73305 -18.92381 -17.69116 -17.17777 -16.78541 -16.22219 -15.89598 -15.51135 -14.89329 -14.83892 -14.65238 -14.25462 -13.93722 -13.67388 -13.34688 -13.14399 -13.04225 -12.97435 -12.85041 -12.55859 -12.12237 -11.97027 -11.68226 -11.55883 -11.22024 -11.06803 -10.99679 -10.76757 -10.58705 -10.46681 -10.42872 -10.35811 -10.15509 -9.79036 -9.69799 -9.42441 -9.32600 -8.75536 -8.40521 -6.06804 -4.18272 0.68327 1.46255 2.13302 2.55275 3.16978 3.25785 3.32744 3.34643 3.85508 4.04593 4.19365 4.25691 4.35719 4.49122 4.66001 4.67681 4.79951 4.95665 5.02557 5.12422 5.18460 5.30284 5.46280 5.51437 5.62364 5.65417 5.77068 5.87773 6.33131 6.52020 6.64621 6.73780 6.84717 6.87856 6.99938 7.26834 7.44142 7.65315 7.93952 8.06130 8.30072 8.48761 8.80370 9.47297 10.94387 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.026347 B = 0.003251 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.502297 B = 8611.076618 C = 9081.586260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.173 3.827 3 N -0.294 5.294 4 N -0.274 5.274 5 C 0.166 3.834 6 C 0.207 3.793 7 N -1.128 6.128 8 S 2.593 3.407 9 O -0.959 6.959 10 O -0.964 6.964 11 C -0.580 4.580 12 C 0.082 3.918 13 C -0.162 4.162 14 C -0.164 4.164 15 C -0.503 4.503 16 H 0.060 0.940 17 C 0.065 3.935 18 N -0.883 5.883 19 Si 0.895 3.105 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.275 1.275 23 N -0.466 5.466 24 C 0.065 3.935 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.416 0.584 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.025 0.975 34 H 0.094 0.906 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.098 0.902 38 H 0.026 0.974 39 H 0.263 0.737 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.011 3.804 -3.086 20.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.095 4.095 3 N -0.135 5.135 4 N -0.115 5.115 5 C -0.102 4.102 6 C 0.078 3.922 7 N -0.885 5.885 8 S 2.691 3.309 9 O -0.949 6.949 10 O -0.954 6.954 11 C -0.714 4.714 12 C 0.080 3.920 13 C -0.220 4.220 14 C -0.222 4.222 15 C -0.543 4.543 16 H 0.078 0.922 17 C -0.137 4.137 18 N -0.521 5.521 19 Si 0.723 3.277 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.199 1.199 23 N -0.157 5.157 24 C -0.078 4.078 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.249 0.751 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.044 0.956 34 H 0.113 0.887 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.116 0.884 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.609 4.148 -2.713 20.226 hybrid contribution 0.640 -0.238 -0.404 0.793 sum -18.969 3.910 -3.117 19.617 Atomic orbital electron populations 1.20225 0.83626 1.04633 1.04047 1.24901 0.97157 0.82876 1.04517 1.74297 0.96356 1.23855 1.19041 1.74294 1.12187 1.07788 1.17257 1.24612 0.86710 0.92610 1.06279 1.19487 0.90111 0.98145 0.84482 1.56003 1.61180 1.58698 1.12660 1.05732 0.76243 0.73705 0.75225 1.93577 1.86536 1.85915 1.28905 1.93530 1.78826 1.46860 1.76183 1.30536 1.16945 1.11898 1.12059 1.17942 0.90723 0.89295 0.94061 1.22222 1.02651 1.01241 0.95850 1.22318 1.00508 1.00328 0.99030 1.20941 0.92389 1.07375 1.33557 0.92156 1.24933 0.99010 0.94619 0.95128 1.69804 1.27725 1.10428 1.44114 0.86556 0.83214 0.78689 0.79223 1.20513 1.21217 1.19948 1.46039 1.06594 1.09095 1.53990 1.22251 1.03058 0.77589 1.04886 0.89547 0.90359 0.88567 0.88376 0.87855 0.75124 0.86246 0.85840 0.95571 0.88696 0.94467 0.94453 0.88374 0.95496 0.92691 0.89466 0.88776 0.88170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.06 36.01 0.36 0.01 16 2 C 0.17 1.79 8.03 -154.98 -1.24 0.55 16 3 N -0.29 -4.17 12.21 32.80 0.40 -3.77 16 4 N -0.27 -4.11 12.21 32.79 0.40 -3.71 16 5 C 0.17 2.06 7.43 -155.00 -1.15 0.90 16 6 C 0.21 2.37 6.48 -5.19 -0.03 2.34 16 7 N -1.13 -14.74 5.88 -11.65 -0.07 -14.81 16 8 S 2.59 44.60 4.49 -107.50 -0.48 44.12 16 9 O -0.96 -19.31 15.84 -57.54 -0.91 -20.22 16 10 O -0.96 -18.11 15.12 -57.54 -0.87 -18.98 16 11 C -0.58 -10.74 5.01 37.16 0.19 -10.55 16 12 C 0.08 1.93 0.52 -155.66 -0.08 1.85 16 13 C -0.16 -3.90 7.58 37.15 0.28 -3.61 16 14 C -0.16 -3.88 7.79 37.16 0.29 -3.59 16 15 C -0.50 -12.94 8.01 -34.44 -0.28 -13.22 16 16 H 0.06 1.51 7.75 -52.48 -0.41 1.10 16 17 C 0.07 1.70 5.09 -17.82 -0.09 1.61 16 18 N -0.88 -23.69 9.39 55.43 0.52 -23.17 16 19 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 23 N -0.47 -4.63 3.15 -118.00 -0.37 -5.00 16 24 C 0.06 0.39 10.71 59.85 0.64 1.03 16 25 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.26 7.87 -51.93 -0.41 -0.15 16 27 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.10 0.98 6.76 -51.93 -0.35 0.62 16 29 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.42 5.13 8.61 -34.47 -0.30 4.83 16 31 H 0.12 1.93 8.14 -51.92 -0.42 1.51 16 32 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 33 H 0.03 0.59 5.96 -51.93 -0.31 0.28 16 34 H 0.09 2.47 5.99 -51.93 -0.31 2.16 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 2.53 6.01 -51.93 -0.31 2.22 16 38 H 0.03 0.59 5.46 -51.93 -0.28 0.31 16 39 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.30 7.82 -51.93 -0.41 -0.11 16 42 H 0.10 0.59 7.19 -51.93 -0.37 0.21 16 LS Contribution 348.73 15.07 5.26 5.26 Total: -1.00 -34.60 348.73 -8.24 -42.84 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -5.98 Total: 4.74 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: -1.12 Total: -22.69 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.88 Total: -50.45 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -1.78 Total: -39.20 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 44.60 SS G_CDS: -0.48 Total: 44.12 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.60 -8.24 -42.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414210638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.268 kcal (2) G-P(sol) polarization free energy of solvation -34.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds