Wall clock time and date at job start Tue Mar 31 2020 11:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30520 * 126.34506 * 2 1 4 4 N 1.28599 * 109.66759 * 180.02562 * 3 2 1 5 5 C 1.30512 * 109.67682 * 359.97438 * 4 3 2 6 6 C 1.50699 * 126.34594 * 179.97438 * 5 4 3 7 7 N 1.46504 * 109.47462 * 90.02765 * 6 5 4 8 8 S 1.65590 * 120.00159 * 164.99882 * 7 6 5 9 9 O 1.42109 * 104.27696 * 181.06788 * 8 7 6 10 10 O 1.42098 * 104.28243 * 308.92825 * 8 7 6 11 11 C 1.81395 * 104.45113 * 65.00057 * 8 7 6 12 12 C 1.52998 * 109.47410 * 179.97438 * 11 8 7 13 13 C 1.52994 * 109.47287 * 299.99787 * 12 11 8 14 14 C 1.53007 * 109.46817 * 60.00009 * 12 11 8 15 15 C 1.50704 * 109.47508 * 179.97438 * 12 11 8 16 16 H 1.08005 * 119.99579 * 357.69026 * 15 12 11 17 17 C 1.37871 * 120.00280 * 177.69905 * 15 12 11 18 18 N 1.31516 * 120.00194 * 6.58043 * 17 15 12 19 19 Si 1.86804 * 120.00167 * 186.58213 * 17 15 12 20 20 H 1.48498 * 109.47308 * 84.98899 * 19 17 15 21 21 H 1.48496 * 109.47143 * 204.99668 * 19 17 15 22 22 H 1.48510 * 109.46815 * 324.99310 * 19 17 15 23 23 N 1.35492 * 107.30843 * 0.22609 * 5 4 3 24 24 C 1.46507 * 126.98239 * 179.77247 * 23 5 4 25 25 H 1.08994 * 109.47172 * 89.97202 * 1 2 3 26 26 H 1.09005 * 109.46643 * 209.97793 * 1 2 3 27 27 H 1.08999 * 109.46911 * 329.97008 * 1 2 3 28 28 H 1.09005 * 109.47312 * 210.02471 * 6 5 4 29 29 H 1.08997 * 109.47481 * 330.02377 * 6 5 4 30 30 H 0.97006 * 119.99374 * 344.99878 * 7 6 5 31 31 H 1.09000 * 109.47508 * 299.99752 * 11 8 7 32 32 H 1.09000 * 109.47736 * 59.99697 * 11 8 7 33 33 H 1.09007 * 109.46966 * 66.66880 * 13 12 11 34 34 H 1.09002 * 109.47346 * 186.66244 * 13 12 11 35 35 H 1.08992 * 109.47338 * 306.66843 * 13 12 11 36 36 H 1.09000 * 109.46957 * 60.00538 * 14 12 11 37 37 H 1.09007 * 109.46580 * 179.97438 * 14 12 11 38 38 H 1.08992 * 109.47142 * 299.99814 * 14 12 11 39 39 H 0.96994 * 120.00316 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.47035 * 90.00200 * 24 23 5 41 41 H 1.08994 * 109.46719 * 210.00362 * 24 23 5 42 42 H 1.09004 * 109.46871 * 330.00000 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2806 1.0513 0.0000 4 7 3.5125 0.6822 -0.0005 5 6 3.5808 -0.6211 -0.0004 6 6 4.8396 -1.4495 -0.0014 7 7 5.2486 -1.7183 1.3795 8 16 6.3662 -2.8980 1.6973 9 8 6.4911 -2.8903 3.1129 10 8 5.8741 -4.0411 1.0116 11 6 7.8916 -2.2976 0.9206 12 6 9.0135 -3.3128 1.1478 13 6 9.2426 -3.4921 2.6498 14 6 8.6197 -4.6551 0.5280 15 6 10.2806 -2.8142 0.5019 16 1 10.2761 -1.8861 -0.0503 17 6 11.4453 -3.5430 0.6159 18 7 11.4244 -4.7332 1.1751 19 14 13.0534 -2.8400 -0.0239 20 1 13.6625 -1.9719 1.0156 21 1 13.9843 -3.9502 -0.3494 22 1 12.7917 -2.0388 -1.2466 23 7 2.3101 -1.0913 -0.0048 24 6 1.8897 -2.4948 -0.0109 25 1 -0.3633 0.0005 -1.0276 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8897 0.5143 28 1 4.6536 -2.3926 -0.5153 29 1 5.6320 -0.9057 -0.5157 30 1 4.8645 -1.2051 2.1076 31 1 7.7284 -2.1694 -0.1495 32 1 8.1723 -1.3415 1.3623 33 1 8.3673 -3.9634 3.0971 34 1 10.1170 -4.1225 2.8113 35 1 9.4064 -2.5183 3.1112 36 1 8.4567 -4.5273 -0.5421 37 1 9.4193 -5.3783 0.6895 38 1 7.7033 -5.0159 0.9948 39 1 12.2439 -5.2458 1.2556 40 1 1.7833 -2.8467 1.0152 41 1 0.9340 -2.5855 -0.5271 42 1 2.6391 -3.0963 -0.5255 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414210638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:57 Heat of formation + Delta-G solvation = -19.987952 kcal Electronic energy + Delta-G solvation = -25157.537929 eV Core-core repulsion = 21493.540642 eV Total energy + Delta-G solvation = -3663.997287 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.23952 -38.16870 -38.11246 -37.02548 -36.76751 -36.02045 -33.62777 -33.15431 -29.52561 -28.31747 -28.27541 -27.66472 -27.24351 -26.89169 -22.39251 -21.95253 -21.38983 -20.35209 -18.95238 -18.18236 -17.85274 -17.55562 -17.16261 -16.94889 -16.61784 -16.01992 -15.67400 -15.15418 -14.92178 -14.64482 -14.48140 -14.40467 -14.36449 -13.86280 -13.76528 -13.57702 -13.32802 -13.29810 -13.05926 -12.96552 -12.84500 -12.77334 -12.60059 -12.48067 -12.20754 -12.13491 -11.95080 -11.54564 -11.46564 -11.35490 -11.18310 -10.80143 -10.47806 -10.36969 -10.20180 -8.02606 -6.19924 -0.69442 0.64021 1.45097 1.45189 1.47719 1.54832 1.61194 1.99485 2.45352 2.80047 3.01460 3.19872 3.32105 3.46067 3.75745 3.79497 3.95999 4.09731 4.20074 4.30534 4.37537 4.56906 4.61896 4.63814 4.69434 4.77083 4.87769 4.90695 4.92898 4.97029 5.01735 5.11086 5.15533 5.41849 5.52218 5.66952 5.83632 5.84455 6.00562 6.14967 6.37041 6.84901 7.48190 7.61929 8.96925 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.026347 B = 0.003251 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.502297 B = 8611.076618 C = 9081.586260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.183 3.817 3 N -0.343 5.343 4 N -0.314 5.314 5 C 0.159 3.841 6 C 0.200 3.800 7 N -1.113 6.113 8 S 2.622 3.378 9 O -0.989 6.989 10 O -0.978 6.978 11 C -0.589 4.589 12 C 0.070 3.930 13 C -0.160 4.160 14 C -0.160 4.160 15 C -0.518 4.518 16 H 0.063 0.937 17 C 0.020 3.980 18 N -0.906 5.906 19 Si 0.950 3.050 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.268 1.268 23 N -0.464 5.464 24 C 0.053 3.947 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.421 0.579 31 H 0.143 0.857 32 H 0.136 0.864 33 H 0.030 0.970 34 H 0.070 0.930 35 H 0.040 0.960 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.035 0.965 39 H 0.261 0.739 40 H 0.094 0.906 41 H 0.128 0.872 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.885 4.076 -4.004 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.085 4.085 3 N -0.184 5.184 4 N -0.155 5.155 5 C -0.111 4.111 6 C 0.072 3.928 7 N -0.873 5.873 8 S 2.719 3.281 9 O -0.979 6.979 10 O -0.968 6.968 11 C -0.722 4.722 12 C 0.067 3.933 13 C -0.218 4.218 14 C -0.218 4.218 15 C -0.557 4.557 16 H 0.081 0.919 17 C -0.180 4.180 18 N -0.544 5.544 19 Si 0.777 3.223 20 H -0.205 1.205 21 H -0.213 1.213 22 H -0.192 1.192 23 N -0.154 5.154 24 C -0.088 4.088 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.117 0.883 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.256 0.744 31 H 0.161 0.839 32 H 0.155 0.845 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.112 0.888 41 H 0.146 0.854 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -21.482 4.416 -3.637 22.231 hybrid contribution 1.099 -0.329 -0.129 1.155 sum -20.383 4.087 -3.766 21.127 Atomic orbital electron populations 1.20491 0.80155 1.06104 1.05692 1.25753 0.98852 0.82166 1.01756 1.74203 0.96642 1.25943 1.21579 1.74177 1.13197 1.09399 1.18731 1.24610 0.87821 0.92145 1.06482 1.19751 0.90485 0.99235 0.83360 1.55540 1.59910 1.57984 1.13875 1.04635 0.75868 0.73644 0.74001 1.93534 1.87028 1.86559 1.30829 1.93505 1.78886 1.48078 1.76299 1.30505 1.16410 1.11072 1.14226 1.17919 0.91913 0.90363 0.93062 1.22172 1.01742 1.00893 0.96957 1.22238 0.99880 1.00079 0.99588 1.21311 0.93563 1.07370 1.33455 0.91850 1.25628 1.01819 0.94933 0.95614 1.69940 1.28128 1.11315 1.45060 0.85690 0.79914 0.77931 0.78797 1.20513 1.21344 1.19226 1.46266 1.05686 1.10435 1.53031 1.22627 1.04810 0.75390 1.05932 0.87636 0.87625 0.88344 0.86557 0.86647 0.74435 0.83850 0.84544 0.95085 0.91163 0.94116 0.93780 0.91011 0.94625 0.92934 0.88790 0.85416 0.87943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.06 71.24 0.72 0.22 16 2 C 0.18 3.45 8.03 137.98 1.11 4.56 16 3 N -0.34 -9.53 12.21 -50.15 -0.61 -10.15 16 4 N -0.31 -9.28 12.21 -50.16 -0.61 -9.89 16 5 C 0.16 3.71 7.43 137.98 1.02 4.73 16 6 C 0.20 4.17 6.48 85.63 0.56 4.72 16 7 N -1.11 -27.01 5.88 -190.78 -1.12 -28.13 16 8 S 2.62 86.04 4.49 -56.49 -0.25 85.79 16 9 O -0.99 -38.86 15.84 -127.65 -2.02 -40.89 16 10 O -0.98 -34.91 15.12 -127.65 -1.93 -36.84 16 11 C -0.59 -20.86 5.01 71.98 0.36 -20.50 16 12 C 0.07 3.22 0.52 -52.93 -0.03 3.19 16 13 C -0.16 -7.73 7.58 71.98 0.55 -7.18 16 14 C -0.16 -7.52 7.79 71.98 0.56 -6.96 16 15 C -0.52 -26.35 8.01 25.60 0.20 -26.15 16 16 H 0.06 3.10 7.75 -2.91 -0.02 3.08 16 17 C 0.02 1.02 5.09 84.65 0.43 1.45 16 18 N -0.91 -49.31 9.39 21.45 0.20 -49.11 16 19 Si 0.95 41.74 29.54 68.60 2.03 43.76 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 N -0.46 -8.15 3.15 -527.24 -1.66 -9.81 16 24 C 0.05 0.47 10.71 127.77 1.37 1.84 16 25 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.11 0.24 7.87 -2.38 -0.02 0.23 16 27 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.12 2.00 6.76 -2.38 -0.02 1.99 16 29 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.42 9.75 8.61 -96.74 -0.83 8.92 16 31 H 0.14 4.30 8.14 -2.39 -0.02 4.28 16 32 H 0.14 4.43 8.14 -2.39 -0.02 4.41 16 33 H 0.03 1.42 5.96 -2.38 -0.01 1.40 16 34 H 0.07 3.73 5.99 -2.39 -0.01 3.71 16 35 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.07 3.75 6.01 -2.38 -0.01 3.74 16 38 H 0.03 1.56 5.46 -2.39 -0.01 1.55 16 39 H 0.26 13.67 8.31 -92.71 -0.77 12.89 16 40 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.13 0.25 7.82 -2.39 -0.02 0.24 16 42 H 0.10 0.89 7.19 -2.38 -0.02 0.88 16 Total: -1.00 -75.32 348.73 1.08 -74.24 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.21 Total: 21.09 kcal Atomic # 6 Polarization: -46.92 SS G_CDS: 6.85 Total: -40.07 kcal Atomic # 7 Polarization: -103.28 SS G_CDS: -3.80 Total: -107.09 kcal Atomic # 8 Polarization: -73.77 SS G_CDS: -3.95 Total: -77.72 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 86.04 SS G_CDS: -0.25 Total: 85.79 kcal Total: -75.32 1.08 -74.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414210638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.250 kcal (2) G-P(sol) polarization free energy of solvation -75.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds