Wall clock time and date at job start Tue Mar 31 2020 11:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30837 * 125.89793 * 2 1 4 4 N 1.40093 * 108.20017 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.03342 * 180.02562 * 4 3 2 6 6 C 1.34945 * 107.92559 * 359.75853 * 4 3 2 7 7 C 1.35313 * 107.74527 * 0.38832 * 6 4 3 8 8 C 1.50707 * 126.03336 * 179.87400 * 7 6 4 9 9 N 1.46501 * 109.47168 * 259.68758 * 8 7 6 10 10 S 1.65598 * 120.00034 * 165.00185 * 9 8 7 11 11 O 1.42100 * 106.40183 * 311.46236 * 10 9 8 12 12 O 1.42101 * 106.40217 * 178.54484 * 10 9 8 13 13 N 1.65597 * 107.21541 * 65.00515 * 10 9 8 14 14 C 1.46503 * 119.99956 * 269.99520 * 13 10 9 15 15 C 1.46497 * 120.00227 * 89.99985 * 13 10 9 16 16 H 1.09003 * 109.46733 * 0.02562 * 15 13 10 17 17 C 1.53000 * 109.47145 * 119.99787 * 15 13 10 18 18 C 1.50694 * 109.47115 * 239.99861 * 15 13 10 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 13 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 H 1.08997 * 109.47377 * 269.97774 * 1 2 3 27 27 H 1.09007 * 109.46760 * 29.97544 * 1 2 3 28 28 H 1.08997 * 109.47159 * 149.97442 * 1 2 3 29 29 H 1.09003 * 109.47106 * 89.97008 * 5 4 3 30 30 H 1.08996 * 109.47298 * 209.97258 * 5 4 3 31 31 H 1.08999 * 109.47148 * 329.97361 * 5 4 3 32 32 H 1.08002 * 126.12164 * 180.24000 * 6 4 3 33 33 H 1.09001 * 109.46602 * 139.69301 * 8 7 6 34 34 H 1.08992 * 109.47327 * 19.69130 * 8 7 6 35 35 H 0.96998 * 119.99681 * 345.00768 * 9 8 7 36 36 H 1.08994 * 109.47665 * 270.00896 * 14 13 10 37 37 H 1.09008 * 109.46786 * 30.00504 * 14 13 10 38 38 H 1.08997 * 109.47360 * 149.99945 * 14 13 10 39 39 H 1.08997 * 109.47359 * 180.02562 * 17 15 13 40 40 H 1.09007 * 109.47356 * 300.00099 * 17 15 13 41 41 H 1.09000 * 109.47156 * 59.99824 * 17 15 13 42 42 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6340 -0.0006 5 6 4.7900 1.5006 -0.0003 6 6 3.6142 -0.7154 0.0045 7 6 2.3271 -1.1330 -0.0006 8 6 1.8599 -2.5658 -0.0003 9 7 1.4795 -2.9557 -1.3603 10 16 1.2836 -4.5559 -1.7387 11 8 2.4316 -5.2294 -1.2409 12 8 0.8872 -4.6001 -3.1026 13 7 -0.0039 -5.1135 -0.8592 14 6 0.2105 -5.6797 0.4749 15 6 -1.3574 -5.0407 -1.4152 16 1 -1.3184 -4.5940 -2.4087 17 6 -1.9451 -6.4500 -1.5128 18 6 -2.2243 -4.1960 -0.5176 19 1 -1.8090 -3.7575 0.3777 20 6 -3.5483 -3.9837 -0.8388 21 7 -4.0544 -4.5181 -1.9288 22 14 -4.6232 -2.9372 0.2742 23 1 -5.9952 -2.8633 -0.2894 24 1 -4.6756 -3.5466 1.6274 25 1 -4.0533 -1.5692 0.3691 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8903 -0.5135 28 1 -0.3633 -0.8897 -0.5142 29 1 5.0828 1.7153 1.0275 30 1 5.6094 0.9982 -0.5142 31 1 4.5564 2.4333 -0.5138 32 1 4.4891 -1.3486 0.0091 33 1 0.9992 -2.6671 0.6608 34 1 2.6655 -3.2106 0.3506 35 1 1.3424 -2.2765 -2.0391 36 1 0.3841 -6.7524 0.3908 37 1 1.0777 -5.2063 0.9353 38 1 -0.6707 -5.5014 1.0912 39 1 -2.9519 -6.3959 -1.9269 40 1 -1.3179 -7.0610 -2.1621 41 1 -1.9838 -6.8971 -0.5195 42 1 -4.9859 -4.3690 -2.1545 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414249370.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:32 Heat of formation + Delta-G solvation = 0.981629 kcal Electronic energy + Delta-G solvation = -25591.652997 eV Core-core repulsion = 21928.565019 eV Total energy + Delta-G solvation = -3663.087978 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.30507 -36.63768 -36.11173 -35.37175 -35.18756 -33.56323 -32.56803 -30.48801 -29.35129 -29.04674 -26.35149 -25.45274 -25.14941 -24.12087 -20.90892 -20.71099 -19.59140 -18.74821 -17.24277 -16.95099 -16.45664 -16.31054 -15.80869 -15.46485 -14.91376 -14.46980 -14.23656 -13.62730 -13.53487 -13.40698 -13.23238 -13.13199 -12.72008 -12.62121 -12.33050 -12.10124 -11.96592 -11.93158 -11.74511 -11.47874 -11.40759 -11.32347 -11.18071 -10.93997 -10.84558 -10.47455 -10.40659 -10.18505 -10.03748 -9.32598 -9.23829 -9.04094 -8.48855 -8.45306 -7.91715 -6.06793 -4.15221 1.29318 1.82222 2.41747 2.68020 3.27245 3.33634 3.34148 3.67296 4.23904 4.35004 4.37498 4.70653 4.89188 4.93434 5.04508 5.14419 5.21883 5.23854 5.31702 5.45491 5.61971 5.78431 5.83754 6.05196 6.13827 6.16384 6.21179 6.24508 6.40090 6.70073 6.70274 6.91082 6.91313 6.92184 7.15394 7.33254 7.58355 7.66144 7.69148 7.81677 8.08090 8.29010 8.87533 9.50882 10.98197 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.005155 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.450705 B = 5430.295111 C = 6999.256990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.096 3.904 3 N -0.303 5.303 4 N -0.382 5.382 5 C 0.105 3.895 6 C 0.071 3.929 7 C -0.242 4.242 8 C 0.203 3.797 9 N -1.124 6.124 10 S 2.783 3.217 11 O -1.001 7.001 12 O -0.983 6.983 13 N -0.990 5.990 14 C 0.106 3.894 15 C 0.269 3.731 16 H 0.059 0.941 17 C -0.145 4.145 18 C -0.524 4.524 19 H 0.063 0.937 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.895 3.105 23 H -0.288 1.288 24 H -0.278 1.278 25 H -0.275 1.275 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.175 0.825 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.413 0.587 36 H 0.042 0.958 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.011 0.989 41 H 0.032 0.968 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.853 7.694 5.632 16.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.071 4.071 3 N -0.125 5.125 4 N -0.163 5.163 5 C -0.037 4.037 6 C -0.077 4.077 7 C -0.255 4.255 8 C 0.075 3.925 9 N -0.883 5.883 10 S 2.792 3.208 11 O -0.985 6.985 12 O -0.967 6.967 13 N -0.833 5.833 14 C -0.041 4.041 15 C 0.166 3.834 16 H 0.076 0.924 17 C -0.205 4.205 18 C -0.564 4.564 19 H 0.081 0.919 20 C -0.138 4.138 21 N -0.525 5.525 22 Si 0.722 3.278 23 H -0.214 1.214 24 H -0.203 1.203 25 H -0.201 1.201 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.192 0.808 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.245 0.755 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.030 0.970 41 H 0.051 0.949 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.444 8.398 5.058 17.457 hybrid contribution -0.820 0.288 0.630 1.073 sum 13.624 8.686 5.687 17.129 Atomic orbital electron populations 1.20320 0.85967 1.04334 1.03430 1.22392 0.97172 0.89931 0.97578 1.77346 0.86201 1.22734 1.26239 1.48370 1.05681 1.04692 1.57562 1.21809 0.83703 0.95021 1.03162 1.22400 0.99286 0.84878 1.01101 1.19962 0.91878 0.95964 1.17671 1.19316 0.99418 0.90419 0.83307 1.56109 1.86426 1.27311 1.18483 1.01760 0.73009 0.72878 0.73187 1.93527 1.49780 1.73198 1.81977 1.93590 1.83388 1.86278 1.33473 1.57701 1.22990 1.74455 1.28153 1.21202 1.01243 0.97258 0.84391 1.18707 0.75638 0.94342 0.94739 0.92368 1.22058 1.02975 0.96650 0.98777 1.21334 0.94830 1.31011 1.09207 0.91854 1.24918 0.97833 0.95818 0.95209 1.69874 1.14545 1.43903 1.24190 0.86624 0.79541 0.80872 0.80717 1.21385 1.20337 1.20096 0.90356 0.91043 0.88877 0.90941 0.89567 0.89421 0.80782 0.90740 0.90580 0.75452 0.93966 0.93250 0.90185 0.88970 0.96961 0.94907 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.26 36.01 0.37 -0.74 16 2 C 0.10 1.38 7.22 -82.41 -0.59 0.78 16 3 N -0.30 -4.37 12.58 33.67 0.42 -3.95 16 4 N -0.38 -4.40 4.01 -68.16 -0.27 -4.67 16 5 C 0.10 0.70 11.47 59.85 0.69 1.39 16 6 C 0.07 0.80 11.40 -17.23 -0.20 0.60 16 7 C -0.24 -3.21 5.50 -105.05 -0.58 -3.79 16 8 C 0.20 2.78 6.36 -5.19 -0.03 2.75 16 9 N -1.12 -17.72 6.05 -11.65 -0.07 -17.80 16 10 S 2.78 53.51 6.09 -107.50 -0.66 52.86 16 11 O -1.00 -20.01 16.68 -57.17 -0.95 -20.96 16 12 O -0.98 -22.34 16.70 -57.17 -0.95 -23.30 16 13 N -0.99 -19.91 3.12 -115.85 -0.36 -20.27 16 14 C 0.11 1.81 9.28 59.85 0.56 2.37 16 15 C 0.27 6.41 2.62 -69.09 -0.18 6.23 16 16 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 17 C -0.14 -3.42 8.97 37.16 0.33 -3.09 16 18 C -0.52 -12.95 7.99 -34.44 -0.28 -13.22 16 19 H 0.06 1.49 7.33 -52.49 -0.38 1.11 16 20 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 21 N -0.89 -24.01 11.32 55.43 0.63 -23.38 16 22 Si 0.89 19.88 29.54 -169.99 -5.02 14.86 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.09 1.36 7.96 -51.93 -0.41 0.95 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.18 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.96 7.74 -51.93 -0.40 0.56 16 35 H 0.41 6.23 8.64 -34.47 -0.30 5.93 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.72 7.79 -51.92 -0.40 0.31 16 38 H 0.08 1.39 7.02 -51.93 -0.36 1.02 16 39 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 40 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 42 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -32.90 362.42 -8.06 -40.96 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.28 Total: 5.35 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -0.01 Total: -5.16 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: 0.35 Total: -70.07 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -1.91 Total: -44.26 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 53.51 SS G_CDS: -0.66 Total: 52.86 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.90 -8.06 -40.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414249370.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.943 kcal (2) G-P(sol) polarization free energy of solvation -32.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds