Wall clock time and date at job start Tue Mar 31 2020 11:04:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 N 1.30837 * 125.89793 * 2 1
4 4 N 1.40093 * 108.20017 * 180.02562 * 3 2 1
5 5 C 1.46501 * 126.03342 * 180.02562 * 4 3 2
6 6 C 1.34945 * 107.92559 * 359.75853 * 4 3 2
7 7 C 1.35313 * 107.74527 * 0.38832 * 6 4 3
8 8 C 1.50707 * 126.03336 * 179.87400 * 7 6 4
9 9 N 1.46501 * 109.47168 * 259.68758 * 8 7 6
10 10 S 1.65598 * 120.00034 * 165.00185 * 9 8 7
11 11 O 1.42100 * 106.40183 * 311.46236 * 10 9 8
12 12 O 1.42101 * 106.40217 * 178.54484 * 10 9 8
13 13 N 1.65597 * 107.21541 * 65.00515 * 10 9 8
14 14 C 1.46503 * 119.99956 * 269.99520 * 13 10 9
15 15 C 1.46497 * 120.00227 * 89.99985 * 13 10 9
16 16 H 1.09003 * 109.46733 * 0.02562 * 15 13 10
17 17 C 1.53000 * 109.47145 * 119.99787 * 15 13 10
18 18 C 1.50694 * 109.47115 * 239.99861 * 15 13 10
19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 13
20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 13
21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15
22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15
23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18
24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18
25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18
26 26 H 1.08997 * 109.47377 * 269.97774 * 1 2 3
27 27 H 1.09007 * 109.46760 * 29.97544 * 1 2 3
28 28 H 1.08997 * 109.47159 * 149.97442 * 1 2 3
29 29 H 1.09003 * 109.47106 * 89.97008 * 5 4 3
30 30 H 1.08996 * 109.47298 * 209.97258 * 5 4 3
31 31 H 1.08999 * 109.47148 * 329.97361 * 5 4 3
32 32 H 1.08002 * 126.12164 * 180.24000 * 6 4 3
33 33 H 1.09001 * 109.46602 * 139.69301 * 8 7 6
34 34 H 1.08992 * 109.47327 * 19.69130 * 8 7 6
35 35 H 0.96998 * 119.99681 * 345.00768 * 9 8 7
36 36 H 1.08994 * 109.47665 * 270.00896 * 14 13 10
37 37 H 1.09008 * 109.46786 * 30.00504 * 14 13 10
38 38 H 1.08997 * 109.47360 * 149.99945 * 14 13 10
39 39 H 1.08997 * 109.47359 * 180.02562 * 17 15 13
40 40 H 1.09007 * 109.47356 * 300.00099 * 17 15 13
41 41 H 1.09000 * 109.47156 * 59.99824 * 17 15 13
42 42 H 0.97001 * 119.99646 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2742 1.0599 0.0000
4 7 3.6088 0.6340 -0.0006
5 6 4.7900 1.5006 -0.0003
6 6 3.6142 -0.7154 0.0045
7 6 2.3271 -1.1330 -0.0006
8 6 1.8599 -2.5658 -0.0003
9 7 1.4795 -2.9557 -1.3603
10 16 1.2836 -4.5559 -1.7387
11 8 2.4316 -5.2294 -1.2409
12 8 0.8872 -4.6001 -3.1026
13 7 -0.0039 -5.1135 -0.8592
14 6 0.2105 -5.6797 0.4749
15 6 -1.3574 -5.0407 -1.4152
16 1 -1.3184 -4.5940 -2.4087
17 6 -1.9451 -6.4500 -1.5128
18 6 -2.2243 -4.1960 -0.5176
19 1 -1.8090 -3.7575 0.3777
20 6 -3.5483 -3.9837 -0.8388
21 7 -4.0544 -4.5181 -1.9288
22 14 -4.6232 -2.9372 0.2742
23 1 -5.9952 -2.8633 -0.2894
24 1 -4.6756 -3.5466 1.6274
25 1 -4.0533 -1.5692 0.3691
26 1 -0.3634 -0.0004 1.0276
27 1 -0.3633 0.8903 -0.5135
28 1 -0.3633 -0.8897 -0.5142
29 1 5.0828 1.7153 1.0275
30 1 5.6094 0.9982 -0.5142
31 1 4.5564 2.4333 -0.5138
32 1 4.4891 -1.3486 0.0091
33 1 0.9992 -2.6671 0.6608
34 1 2.6655 -3.2106 0.3506
35 1 1.3424 -2.2765 -2.0391
36 1 0.3841 -6.7524 0.3908
37 1 1.0777 -5.2063 0.9353
38 1 -0.6707 -5.5014 1.0912
39 1 -2.9519 -6.3959 -1.9269
40 1 -1.3179 -7.0610 -2.1621
41 1 -1.9838 -6.8971 -0.5195
42 1 -4.9859 -4.3690 -2.1545
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001414249370.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:04:32
Heat of formation + Delta-G solvation = -23.315836 kcal
Electronic energy + Delta-G solvation = -25592.706614 eV
Core-core repulsion = 21928.565019 eV
Total energy + Delta-G solvation = -3664.141595 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 316.136 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-42.22784 -38.26341 -37.81519 -36.82386 -36.49861 -34.50742 -34.42542 -31.45500
-30.85498 -30.27638 -27.34349 -27.15081 -26.89047 -25.04391 -22.55288 -21.78611
-20.57641 -20.23779 -18.70727 -18.38582 -18.16669 -17.60729 -17.12594 -16.62208
-16.34777 -15.75637 -15.42105 -15.04678 -14.81991 -14.48339 -14.45050 -14.33115
-14.15733 -13.67074 -13.63006 -13.37819 -13.29261 -13.14151 -13.06261 -12.94596
-12.91842 -12.91114 -12.73046 -12.63486 -12.61274 -12.16352 -12.05507 -11.83111
-11.45941 -11.12237 -10.42018 -10.34303 -10.18107 -9.61934 -9.37561 -8.01735
-6.15808 -0.21666 0.91538 1.52511 1.52869 1.59409 1.62519 1.66870
2.21689 2.52544 2.74875 3.27312 3.50821 3.58599 3.89862 4.12929
4.21518 4.24377 4.38789 4.45587 4.48508 4.69336 4.70962 4.79044
4.79812 4.87611 4.96556 5.02971 5.09364 5.11042 5.13269 5.21497
5.23121 5.35183 5.68251 5.69412 5.74962 5.92286 6.12229 6.14180
6.24307 6.36884 6.73958 6.93757 7.53707 9.02705
Molecular weight = 316.14amu
Principal moments of inertia in cm(-1)
A = 0.012957 B = 0.005155 C = 0.003999
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2160.450705 B = 5430.295111 C = 6999.256990
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C 0.080 3.920
3 N -0.335 5.335
4 N -0.379 5.379
5 C 0.094 3.906
6 C 0.084 3.916
7 C -0.264 4.264
8 C 0.201 3.799
9 N -1.115 6.115
10 S 2.800 3.200
11 O -1.006 7.006
12 O -1.023 7.023
13 N -0.996 5.996
14 C 0.098 3.902
15 C 0.274 3.726
16 H 0.023 0.977
17 C -0.139 4.139
18 C -0.523 4.523
19 H 0.074 0.926
20 C 0.017 3.983
21 N -0.920 5.920
22 Si 0.954 3.046
23 H -0.295 1.295
24 H -0.270 1.270
25 H -0.266 1.266
26 H 0.084 0.916
27 H 0.071 0.929
28 H 0.077 0.923
29 H 0.088 0.912
30 H 0.116 0.884
31 H 0.087 0.913
32 H 0.211 0.789
33 H 0.073 0.927
34 H 0.092 0.908
35 H 0.416 0.584
36 H 0.049 0.951
37 H 0.078 0.922
38 H 0.077 0.923
39 H 0.068 0.932
40 H 0.016 0.984
41 H 0.044 0.956
42 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.799 8.487 7.432 19.413
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.086 4.086
3 N -0.158 5.158
4 N -0.160 5.160
5 C -0.046 4.046
6 C -0.065 4.065
7 C -0.277 4.277
8 C 0.075 3.925
9 N -0.876 5.876
10 S 2.809 3.191
11 O -0.989 6.989
12 O -1.007 7.007
13 N -0.838 5.838
14 C -0.048 4.048
15 C 0.170 3.830
16 H 0.041 0.959
17 C -0.199 4.199
18 C -0.563 4.563
19 H 0.093 0.907
20 C -0.183 4.183
21 N -0.560 5.560
22 Si 0.780 3.220
23 H -0.221 1.221
24 H -0.195 1.195
25 H -0.191 1.191
26 H 0.103 0.897
27 H 0.090 0.910
28 H 0.096 0.904
29 H 0.107 0.893
30 H 0.134 0.866
31 H 0.106 0.894
32 H 0.228 0.772
33 H 0.091 0.909
34 H 0.110 0.890
35 H 0.249 0.751
36 H 0.068 0.932
37 H 0.097 0.903
38 H 0.096 0.904
39 H 0.087 0.913
40 H 0.035 0.965
41 H 0.063 0.937
42 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 16.415 9.200 6.883 20.036
hybrid contribution -1.275 0.095 0.084 1.281
sum 15.140 9.294 6.967 19.082
Atomic orbital electron populations
1.20257 0.86352 1.03575 1.03624 1.22480 0.97351 0.90552 0.98171
1.77273 0.87831 1.23352 1.27384 1.48767 1.05706 1.05472 1.56052
1.22213 0.82749 0.94879 1.04737 1.22933 0.99708 0.85109 0.98715
1.19950 0.92739 0.95233 1.19771 1.19454 0.99954 0.91314 0.81736
1.55855 1.86114 1.25898 1.19750 1.01108 0.72549 0.73411 0.72066
1.93514 1.49597 1.73944 1.81838 1.93534 1.83912 1.87136 1.36132
1.57582 1.21516 1.75346 1.29332 1.21425 1.02421 0.97985 0.82931
1.18364 0.77430 0.93977 0.93263 0.95883 1.21951 1.01704 0.96928
0.99330 1.21607 0.94877 1.30478 1.09297 0.90749 1.25659 0.99248
0.96995 0.96347 1.70023 1.14619 1.45444 1.25912 0.85677 0.77453
0.79772 0.79131 1.22108 1.19499 1.19121 0.89702 0.90971 0.90372
0.89319 0.86570 0.89385 0.77212 0.90870 0.88967 0.75054 0.93234
0.90341 0.90399 0.91328 0.96456 0.93709 0.92975
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -2.14 10.26 71.24 0.73 -1.41 16
2 C 0.08 2.22 7.22 43.10 0.31 2.54 16
3 N -0.33 -9.26 12.58 -47.39 -0.60 -9.85 16
4 N -0.38 -7.75 4.01 -369.57 -1.48 -9.23 16
5 C 0.09 0.96 11.47 127.77 1.47 2.42 16
6 C 0.08 1.63 11.40 83.54 0.95 2.58 16
7 C -0.26 -6.50 5.50 -20.14 -0.11 -6.61 16
8 C 0.20 5.13 6.36 85.64 0.54 5.68 16
9 N -1.11 -34.02 6.05 -190.78 -1.15 -35.18 16
10 S 2.80 105.77 6.09 -56.49 -0.34 105.43 16
11 O -1.01 -38.33 16.68 -128.00 -2.14 -40.47 16
12 O -1.02 -47.17 16.70 -128.00 -2.14 -49.31 16
13 N -1.00 -39.34 3.12 -520.45 -1.62 -40.96 16
14 C 0.10 3.16 9.28 127.77 1.19 4.35 16
15 C 0.27 13.19 2.62 44.24 0.12 13.31 16
16 H 0.02 1.28 6.91 -2.39 -0.02 1.27 16
17 C -0.14 -6.64 8.97 71.98 0.65 -6.00 16
18 C -0.52 -25.72 7.99 25.60 0.20 -25.51 16
19 H 0.07 3.42 7.33 -2.91 -0.02 3.40 16
20 C 0.02 0.87 5.30 84.66 0.45 1.31 16
21 N -0.92 -50.83 11.32 21.45 0.24 -50.59 16
22 Si 0.95 40.57 29.54 68.60 2.03 42.59 16
23 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16
24 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16
25 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16
26 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16
27 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16
28 H 0.08 2.30 7.96 -2.39 -0.02 2.28 16
29 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16
30 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16
31 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16
32 H 0.21 2.39 8.06 -2.91 -0.02 2.36 16
33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16
34 H 0.09 2.05 7.74 -2.39 -0.02 2.03 16
35 H 0.42 12.41 8.64 -96.75 -0.84 11.58 16
36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16
37 H 0.08 2.06 7.79 -2.38 -0.02 2.04 16
38 H 0.08 2.55 7.02 -2.39 -0.02 2.54 16
39 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16
40 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16
41 H 0.04 1.96 7.67 -2.39 -0.02 1.94 16
42 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16
Total: -1.00 -70.79 362.42 -0.52 -71.31
By element:
Atomic # 1 Polarization: 23.40 SS G_CDS: 0.19 Total: 23.59 kcal
Atomic # 6 Polarization: -13.83 SS G_CDS: 6.49 Total: -7.33 kcal
Atomic # 7 Polarization: -141.20 SS G_CDS: -4.61 Total: -145.81 kcal
Atomic # 8 Polarization: -85.50 SS G_CDS: -4.27 Total: -89.77 kcal
Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.59 kcal
Atomic # 16 Polarization: 105.77 SS G_CDS: -0.34 Total: 105.43 kcal
Total: -70.79 -0.52 -71.31 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001414249370.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.993 kcal
(2) G-P(sol) polarization free energy of solvation -70.790 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.797 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.309 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.316 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds