Wall clock time and date at job start Tue Mar 31 2020 11:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30837 * 125.89793 * 2 1 4 4 N 1.40093 * 108.20017 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.03342 * 180.02562 * 4 3 2 6 6 C 1.34945 * 107.92559 * 359.75853 * 4 3 2 7 7 C 1.35313 * 107.74527 * 0.38832 * 6 4 3 8 8 C 1.50707 * 126.03336 * 179.87400 * 7 6 4 9 9 N 1.46501 * 109.47168 * 259.68758 * 8 7 6 10 10 S 1.65598 * 120.00034 * 165.00185 * 9 8 7 11 11 O 1.42100 * 106.40183 * 311.46236 * 10 9 8 12 12 O 1.42101 * 106.40217 * 178.54484 * 10 9 8 13 13 N 1.65597 * 107.21541 * 65.00515 * 10 9 8 14 14 C 1.46503 * 119.99956 * 269.99520 * 13 10 9 15 15 C 1.46497 * 120.00227 * 89.99985 * 13 10 9 16 16 H 1.09003 * 109.46733 * 0.02562 * 15 13 10 17 17 C 1.53000 * 109.47145 * 119.99787 * 15 13 10 18 18 C 1.50694 * 109.47115 * 239.99861 * 15 13 10 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 13 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 H 1.08997 * 109.47377 * 269.97774 * 1 2 3 27 27 H 1.09007 * 109.46760 * 29.97544 * 1 2 3 28 28 H 1.08997 * 109.47159 * 149.97442 * 1 2 3 29 29 H 1.09003 * 109.47106 * 89.97008 * 5 4 3 30 30 H 1.08996 * 109.47298 * 209.97258 * 5 4 3 31 31 H 1.08999 * 109.47148 * 329.97361 * 5 4 3 32 32 H 1.08002 * 126.12164 * 180.24000 * 6 4 3 33 33 H 1.09001 * 109.46602 * 139.69301 * 8 7 6 34 34 H 1.08992 * 109.47327 * 19.69130 * 8 7 6 35 35 H 0.96998 * 119.99681 * 345.00768 * 9 8 7 36 36 H 1.08994 * 109.47665 * 270.00896 * 14 13 10 37 37 H 1.09008 * 109.46786 * 30.00504 * 14 13 10 38 38 H 1.08997 * 109.47360 * 149.99945 * 14 13 10 39 39 H 1.08997 * 109.47359 * 180.02562 * 17 15 13 40 40 H 1.09007 * 109.47356 * 300.00099 * 17 15 13 41 41 H 1.09000 * 109.47156 * 59.99824 * 17 15 13 42 42 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6340 -0.0006 5 6 4.7900 1.5006 -0.0003 6 6 3.6142 -0.7154 0.0045 7 6 2.3271 -1.1330 -0.0006 8 6 1.8599 -2.5658 -0.0003 9 7 1.4795 -2.9557 -1.3603 10 16 1.2836 -4.5559 -1.7387 11 8 2.4316 -5.2294 -1.2409 12 8 0.8872 -4.6001 -3.1026 13 7 -0.0039 -5.1135 -0.8592 14 6 0.2105 -5.6797 0.4749 15 6 -1.3574 -5.0407 -1.4152 16 1 -1.3184 -4.5940 -2.4087 17 6 -1.9451 -6.4500 -1.5128 18 6 -2.2243 -4.1960 -0.5176 19 1 -1.8090 -3.7575 0.3777 20 6 -3.5483 -3.9837 -0.8388 21 7 -4.0544 -4.5181 -1.9288 22 14 -4.6232 -2.9372 0.2742 23 1 -5.9952 -2.8633 -0.2894 24 1 -4.6756 -3.5466 1.6274 25 1 -4.0533 -1.5692 0.3691 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8903 -0.5135 28 1 -0.3633 -0.8897 -0.5142 29 1 5.0828 1.7153 1.0275 30 1 5.6094 0.9982 -0.5142 31 1 4.5564 2.4333 -0.5138 32 1 4.4891 -1.3486 0.0091 33 1 0.9992 -2.6671 0.6608 34 1 2.6655 -3.2106 0.3506 35 1 1.3424 -2.2765 -2.0391 36 1 0.3841 -6.7524 0.3908 37 1 1.0777 -5.2063 0.9353 38 1 -0.6707 -5.5014 1.0912 39 1 -2.9519 -6.3959 -1.9269 40 1 -1.3179 -7.0610 -2.1621 41 1 -1.9838 -6.8971 -0.5195 42 1 -4.9859 -4.3690 -2.1545 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414249370.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:32 Heat of formation + Delta-G solvation = -23.315836 kcal Electronic energy + Delta-G solvation = -25592.706614 eV Core-core repulsion = 21928.565019 eV Total energy + Delta-G solvation = -3664.141595 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.22784 -38.26341 -37.81519 -36.82386 -36.49861 -34.50742 -34.42542 -31.45500 -30.85498 -30.27638 -27.34349 -27.15081 -26.89047 -25.04391 -22.55288 -21.78611 -20.57641 -20.23779 -18.70727 -18.38582 -18.16669 -17.60729 -17.12594 -16.62208 -16.34777 -15.75637 -15.42105 -15.04678 -14.81991 -14.48339 -14.45050 -14.33115 -14.15733 -13.67074 -13.63006 -13.37819 -13.29261 -13.14151 -13.06261 -12.94596 -12.91842 -12.91114 -12.73046 -12.63486 -12.61274 -12.16352 -12.05507 -11.83111 -11.45941 -11.12237 -10.42018 -10.34303 -10.18107 -9.61934 -9.37561 -8.01735 -6.15808 -0.21666 0.91538 1.52511 1.52869 1.59409 1.62519 1.66870 2.21689 2.52544 2.74875 3.27312 3.50821 3.58599 3.89862 4.12929 4.21518 4.24377 4.38789 4.45587 4.48508 4.69336 4.70962 4.79044 4.79812 4.87611 4.96556 5.02971 5.09364 5.11042 5.13269 5.21497 5.23121 5.35183 5.68251 5.69412 5.74962 5.92286 6.12229 6.14180 6.24307 6.36884 6.73958 6.93757 7.53707 9.02705 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.005155 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.450705 B = 5430.295111 C = 6999.256990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.080 3.920 3 N -0.335 5.335 4 N -0.379 5.379 5 C 0.094 3.906 6 C 0.084 3.916 7 C -0.264 4.264 8 C 0.201 3.799 9 N -1.115 6.115 10 S 2.800 3.200 11 O -1.006 7.006 12 O -1.023 7.023 13 N -0.996 5.996 14 C 0.098 3.902 15 C 0.274 3.726 16 H 0.023 0.977 17 C -0.139 4.139 18 C -0.523 4.523 19 H 0.074 0.926 20 C 0.017 3.983 21 N -0.920 5.920 22 Si 0.954 3.046 23 H -0.295 1.295 24 H -0.270 1.270 25 H -0.266 1.266 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.211 0.789 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.416 0.584 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.016 0.984 41 H 0.044 0.956 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.799 8.487 7.432 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.086 4.086 3 N -0.158 5.158 4 N -0.160 5.160 5 C -0.046 4.046 6 C -0.065 4.065 7 C -0.277 4.277 8 C 0.075 3.925 9 N -0.876 5.876 10 S 2.809 3.191 11 O -0.989 6.989 12 O -1.007 7.007 13 N -0.838 5.838 14 C -0.048 4.048 15 C 0.170 3.830 16 H 0.041 0.959 17 C -0.199 4.199 18 C -0.563 4.563 19 H 0.093 0.907 20 C -0.183 4.183 21 N -0.560 5.560 22 Si 0.780 3.220 23 H -0.221 1.221 24 H -0.195 1.195 25 H -0.191 1.191 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.134 0.866 31 H 0.106 0.894 32 H 0.228 0.772 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.249 0.751 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.035 0.965 41 H 0.063 0.937 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.415 9.200 6.883 20.036 hybrid contribution -1.275 0.095 0.084 1.281 sum 15.140 9.294 6.967 19.082 Atomic orbital electron populations 1.20257 0.86352 1.03575 1.03624 1.22480 0.97351 0.90552 0.98171 1.77273 0.87831 1.23352 1.27384 1.48767 1.05706 1.05472 1.56052 1.22213 0.82749 0.94879 1.04737 1.22933 0.99708 0.85109 0.98715 1.19950 0.92739 0.95233 1.19771 1.19454 0.99954 0.91314 0.81736 1.55855 1.86114 1.25898 1.19750 1.01108 0.72549 0.73411 0.72066 1.93514 1.49597 1.73944 1.81838 1.93534 1.83912 1.87136 1.36132 1.57582 1.21516 1.75346 1.29332 1.21425 1.02421 0.97985 0.82931 1.18364 0.77430 0.93977 0.93263 0.95883 1.21951 1.01704 0.96928 0.99330 1.21607 0.94877 1.30478 1.09297 0.90749 1.25659 0.99248 0.96995 0.96347 1.70023 1.14619 1.45444 1.25912 0.85677 0.77453 0.79772 0.79131 1.22108 1.19499 1.19121 0.89702 0.90971 0.90372 0.89319 0.86570 0.89385 0.77212 0.90870 0.88967 0.75054 0.93234 0.90341 0.90399 0.91328 0.96456 0.93709 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.14 10.26 71.24 0.73 -1.41 16 2 C 0.08 2.22 7.22 43.10 0.31 2.54 16 3 N -0.33 -9.26 12.58 -47.39 -0.60 -9.85 16 4 N -0.38 -7.75 4.01 -369.57 -1.48 -9.23 16 5 C 0.09 0.96 11.47 127.77 1.47 2.42 16 6 C 0.08 1.63 11.40 83.54 0.95 2.58 16 7 C -0.26 -6.50 5.50 -20.14 -0.11 -6.61 16 8 C 0.20 5.13 6.36 85.64 0.54 5.68 16 9 N -1.11 -34.02 6.05 -190.78 -1.15 -35.18 16 10 S 2.80 105.77 6.09 -56.49 -0.34 105.43 16 11 O -1.01 -38.33 16.68 -128.00 -2.14 -40.47 16 12 O -1.02 -47.17 16.70 -128.00 -2.14 -49.31 16 13 N -1.00 -39.34 3.12 -520.45 -1.62 -40.96 16 14 C 0.10 3.16 9.28 127.77 1.19 4.35 16 15 C 0.27 13.19 2.62 44.24 0.12 13.31 16 16 H 0.02 1.28 6.91 -2.39 -0.02 1.27 16 17 C -0.14 -6.64 8.97 71.98 0.65 -6.00 16 18 C -0.52 -25.72 7.99 25.60 0.20 -25.51 16 19 H 0.07 3.42 7.33 -2.91 -0.02 3.40 16 20 C 0.02 0.87 5.30 84.66 0.45 1.31 16 21 N -0.92 -50.83 11.32 21.45 0.24 -50.59 16 22 Si 0.95 40.57 29.54 68.60 2.03 42.59 16 23 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 25 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 26 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.08 2.30 7.96 -2.39 -0.02 2.28 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.21 2.39 8.06 -2.91 -0.02 2.36 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.09 2.05 7.74 -2.39 -0.02 2.03 16 35 H 0.42 12.41 8.64 -96.75 -0.84 11.58 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 2.06 7.79 -2.38 -0.02 2.04 16 38 H 0.08 2.55 7.02 -2.39 -0.02 2.54 16 39 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 40 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.04 1.96 7.67 -2.39 -0.02 1.94 16 42 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -70.79 362.42 -0.52 -71.31 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.19 Total: 23.59 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 6.49 Total: -7.33 kcal Atomic # 7 Polarization: -141.20 SS G_CDS: -4.61 Total: -145.81 kcal Atomic # 8 Polarization: -85.50 SS G_CDS: -4.27 Total: -89.77 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.59 kcal Atomic # 16 Polarization: 105.77 SS G_CDS: -0.34 Total: 105.43 kcal Total: -70.79 -0.52 -71.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414249370.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.993 kcal (2) G-P(sol) polarization free energy of solvation -70.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds