Wall clock time and date at job start Tue Mar 31 2020 11:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46501 * 119.99897 * 2 1 4 4 C 1.50698 * 109.47038 * 85.00162 * 3 2 1 5 5 N 1.30517 * 126.34522 * 269.95533 * 4 3 2 6 6 N 1.28600 * 109.67250 * 180.02562 * 5 4 3 7 7 C 1.30526 * 109.67197 * 359.72320 * 6 5 4 8 8 N 1.35494 * 107.30545 * 0.43817 * 7 6 5 9 9 C 1.46499 * 126.97935 * 179.83284 * 8 7 6 10 10 S 1.65598 * 120.00182 * 180.02562 * 2 1 3 11 11 O 1.42102 * 104.27929 * 26.06387 * 10 2 1 12 12 O 1.42093 * 104.28086 * 153.92985 * 10 2 1 13 13 C 1.81400 * 104.44643 * 269.99730 * 10 2 1 14 14 C 1.53005 * 109.47361 * 179.97438 * 13 10 2 15 15 C 1.52999 * 109.46869 * 300.00009 * 14 13 10 16 16 C 1.52999 * 109.46787 * 60.00100 * 14 13 10 17 17 C 1.50698 * 109.47269 * 179.97438 * 14 13 10 18 18 H 1.07999 * 120.00114 * 0.02562 * 17 14 13 19 19 C 1.37871 * 119.99998 * 179.97438 * 17 14 13 20 20 N 1.31517 * 120.00197 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 120.00085 * 180.02562 * 19 17 14 22 22 H 1.48495 * 109.47312 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47278 * 120.00423 * 21 19 17 24 24 H 1.48509 * 109.46884 * 240.00039 * 21 19 17 25 25 H 1.08999 * 109.47516 * 90.00107 * 1 2 3 26 26 H 1.09005 * 109.47280 * 209.99972 * 1 2 3 27 27 H 1.09002 * 109.47356 * 330.00052 * 1 2 3 28 28 H 1.08995 * 109.47199 * 325.00211 * 3 2 1 29 29 H 1.09004 * 109.47099 * 205.00234 * 3 2 1 30 30 H 1.07996 * 126.34830 * 180.29376 * 7 6 5 31 31 H 1.09002 * 109.47391 * 269.68706 * 9 8 7 32 32 H 1.09001 * 109.46813 * 149.68762 * 9 8 7 33 33 H 1.09004 * 109.47041 * 29.68889 * 9 8 7 34 34 H 1.09002 * 109.47357 * 299.99927 * 13 10 2 35 35 H 1.09006 * 109.47670 * 59.99931 * 13 10 2 36 36 H 1.08998 * 109.47091 * 60.00096 * 15 14 13 37 37 H 1.08997 * 109.46834 * 179.97438 * 15 14 13 38 38 H 1.08998 * 109.47343 * 300.00006 * 15 14 13 39 39 H 1.08995 * 109.47470 * 60.00244 * 16 14 13 40 40 H 1.08999 * 109.46800 * 180.02562 * 16 14 13 41 41 H 1.08998 * 109.47309 * 299.99988 * 16 14 13 42 42 H 0.96998 * 120.00360 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3414 1.7657 1.4154 5 7 1.5087 2.5450 2.0500 6 7 1.9448 2.7676 3.2392 7 6 3.0726 2.1356 3.4191 8 7 3.3595 1.4866 2.2648 9 6 4.5297 0.6484 1.9925 10 16 2.2930 -1.4341 -0.0006 11 8 1.3969 -2.3559 -0.6061 12 8 3.5394 -1.1189 -0.6057 13 6 2.5193 -1.8267 1.7558 14 6 3.2809 -3.1471 1.8893 15 6 2.4841 -4.2658 1.2152 16 6 4.6483 -3.0174 1.2154 17 6 3.4695 -3.4729 3.3485 18 1 3.0843 -2.8054 4.1051 19 6 4.1328 -4.6238 3.7177 20 7 4.6015 -5.4370 2.7964 21 14 4.3660 -5.0281 5.5265 22 1 3.7514 -3.9604 6.3556 23 1 3.7158 -6.3280 5.8310 24 1 5.8168 -5.1171 5.8308 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6501 2.0043 -0.5894 29 1 3.1857 1.1177 -0.4344 30 1 3.6680 2.1326 4.3201 31 1 5.3306 1.2643 1.5835 32 1 4.2628 -0.1254 1.2728 33 1 4.8665 0.1827 2.9188 34 1 3.0866 -1.0295 2.2362 35 1 1.5451 -1.9196 2.2360 36 1 2.3481 -4.0299 0.1598 37 1 3.0268 -5.2063 1.3099 38 1 1.5099 -4.3581 1.6953 39 1 5.2160 -2.2204 1.6956 40 1 5.1907 -3.9581 1.3101 41 1 4.5124 -2.7814 0.1600 42 1 5.0685 -6.2466 3.0562 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414277336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:44 Heat of formation + Delta-G solvation = 21.534318 kcal Electronic energy + Delta-G solvation = -26853.024226 eV Core-core repulsion = 23190.827480 eV Total energy + Delta-G solvation = -3662.196747 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.15302 -36.98903 -36.61861 -36.50390 -35.52677 -34.95375 -31.82298 -31.24695 -28.10848 -27.64496 -26.76008 -25.87293 -25.38151 -24.84104 -22.39718 -21.08370 -19.56123 -18.72036 -17.58698 -17.25352 -16.75969 -16.14041 -15.79163 -15.77152 -15.09680 -14.85669 -14.73955 -14.70244 -13.64336 -13.47705 -13.27487 -13.00795 -12.80211 -12.77622 -12.63918 -12.44286 -12.04289 -11.70389 -11.56241 -11.51428 -11.24522 -11.19551 -11.08743 -10.87608 -10.52132 -10.46084 -10.40107 -10.28013 -10.20305 -9.81212 -9.79773 -9.35541 -9.20968 -8.80705 -8.53793 -6.16946 -4.29667 0.55391 1.68585 2.41243 2.70730 3.04099 3.15245 3.24982 3.26867 4.05213 4.19379 4.25713 4.32595 4.46906 4.62419 4.68924 4.99558 5.00692 5.08618 5.26047 5.33608 5.41792 5.47965 5.53400 5.58985 5.76661 5.85554 5.92778 6.06230 6.17895 6.39991 6.49932 6.61370 6.72618 6.73689 6.85605 7.13215 7.32897 7.54278 7.81895 7.94395 8.17754 8.67529 8.69348 9.36967 10.84344 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.014354 B = 0.006023 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.237153 B = 4647.432029 C = 5770.403408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -1.005 6.005 3 C 0.201 3.799 4 C 0.146 3.854 5 N -0.280 5.280 6 N -0.301 5.301 7 C 0.157 3.843 8 N -0.468 5.468 9 C 0.047 3.953 10 S 2.584 3.416 11 O -0.951 6.951 12 O -0.961 6.961 13 C -0.591 4.591 14 C 0.085 3.915 15 C -0.165 4.165 16 C -0.165 4.165 17 C -0.503 4.503 18 H 0.058 0.942 19 C 0.067 3.933 20 N -0.882 5.882 21 Si 0.894 3.106 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.283 1.283 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.220 0.780 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.027 0.973 37 H 0.097 0.903 38 H 0.037 0.963 39 H 0.034 0.966 40 H 0.098 0.902 41 H 0.028 0.972 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.975 11.568 -3.457 12.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.840 5.840 3 C 0.073 3.927 4 C -0.124 4.124 5 N -0.122 5.122 6 N -0.141 5.141 7 C -0.131 4.131 8 N -0.158 5.158 9 C -0.095 4.095 10 S 2.683 3.317 11 O -0.941 6.941 12 O -0.951 6.951 13 C -0.724 4.724 14 C 0.082 3.918 15 C -0.222 4.222 16 C -0.222 4.222 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.520 5.520 21 Si 0.722 3.278 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.209 1.209 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.236 0.764 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.046 0.954 37 H 0.115 0.885 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.117 0.883 41 H 0.047 0.953 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.832 11.809 -4.037 12.613 hybrid contribution 1.228 -0.937 1.739 2.326 sum -0.604 10.872 -2.297 11.129 Atomic orbital electron populations 1.21519 0.77824 1.03551 1.02419 1.57809 1.15820 1.20493 1.89912 1.19612 0.99727 0.86782 0.86615 1.25536 0.87792 1.01347 0.97699 1.74188 1.23037 1.14580 1.00401 1.74243 1.08690 1.20935 1.10224 1.26511 0.97985 0.96405 0.92170 1.46316 1.19851 1.37628 1.12006 1.22679 0.85853 0.95258 1.05733 1.06096 0.73799 0.72379 0.79465 1.93563 1.64683 1.60778 1.75067 1.93511 1.43326 1.82911 1.75385 1.30804 1.10361 1.10538 1.20734 1.17936 0.90612 0.85160 0.98050 1.22282 0.99671 1.03854 0.96434 1.22309 0.99510 1.04006 0.96393 1.20927 1.36668 1.06963 0.89719 0.92366 1.24921 0.95121 0.95927 0.97575 1.69794 1.37411 1.12603 1.32153 0.86502 0.77904 0.78504 0.84900 1.19833 1.20815 1.20866 0.92018 0.90997 0.90309 0.86421 0.86812 0.76396 0.88943 0.88195 0.87418 0.86779 0.86253 0.95447 0.88456 0.94369 0.94644 0.88338 0.95323 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.12 10.22 59.84 0.61 1.73 16 2 N -1.01 -14.04 3.10 -123.06 -0.38 -14.42 16 3 C 0.20 2.43 5.81 -5.19 -0.03 2.40 16 4 C 0.15 1.98 7.61 -154.99 -1.18 0.80 16 5 N -0.28 -4.35 12.21 32.80 0.40 -3.95 16 6 N -0.30 -4.63 12.21 29.69 0.36 -4.27 16 7 C 0.16 1.94 12.74 -89.94 -1.15 0.79 16 8 N -0.47 -5.84 2.89 -122.69 -0.35 -6.19 16 9 C 0.05 0.52 9.11 59.85 0.55 1.07 16 10 S 2.58 45.67 3.97 -107.50 -0.43 45.24 16 11 O -0.95 -19.34 14.71 -57.54 -0.85 -20.19 16 12 O -0.96 -17.56 12.54 -57.54 -0.72 -18.28 16 13 C -0.59 -11.03 4.68 37.16 0.17 -10.86 16 14 C 0.08 1.91 0.52 -155.66 -0.08 1.83 16 15 C -0.16 -3.89 7.78 37.16 0.29 -3.60 16 16 C -0.16 -3.64 7.77 37.16 0.29 -3.35 16 17 C -0.50 -12.42 8.01 -34.44 -0.28 -12.69 16 18 H 0.06 1.42 7.74 -52.49 -0.41 1.02 16 19 C 0.07 1.68 5.15 -17.82 -0.09 1.59 16 20 N -0.88 -22.83 9.35 55.43 0.52 -22.31 16 21 Si 0.89 19.74 29.54 -169.99 -5.02 14.72 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.89 7.79 -51.93 -0.40 0.49 16 27 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 28 H 0.12 1.12 8.11 -51.93 -0.42 0.70 16 29 H 0.11 1.28 6.53 -51.93 -0.34 0.94 16 30 H 0.22 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 1.34 3.63 -51.93 -0.19 1.15 16 33 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.11 1.92 4.59 -51.92 -0.24 1.68 16 35 H 0.12 2.16 8.14 -51.92 -0.42 1.74 16 36 H 0.03 0.61 5.46 -51.93 -0.28 0.33 16 37 H 0.10 2.47 6.07 -51.93 -0.32 2.16 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.03 0.70 7.92 -51.93 -0.41 0.29 16 40 H 0.10 2.40 6.07 -51.93 -0.32 2.09 16 41 H 0.03 0.60 5.47 -51.93 -0.28 0.31 16 42 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 335.76 15.07 5.06 5.06 Total: -1.00 -31.59 335.76 -8.00 -39.59 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -5.70 Total: 5.28 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -0.90 Total: -20.29 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.55 Total: -51.14 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -1.57 Total: -38.47 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 16 Polarization: 45.67 SS G_CDS: -0.43 Total: 45.24 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.59 -8.00 -39.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414277336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.125 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds