Wall clock time and date at job start Tue Mar 31 2020 11:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31964 * 120.49737 * 2 1 4 4 C 1.32661 * 120.90018 * 179.72762 * 3 2 1 5 5 N 1.37936 * 119.04265 * 179.97438 * 4 3 2 6 6 N 1.32667 * 121.92043 * 359.97438 * 4 3 2 7 7 C 1.31965 * 120.89738 * 0.02562 * 6 4 3 8 8 C 1.50700 * 120.49597 * 179.97438 * 7 6 4 9 9 C 1.40113 * 119.01046 * 359.97438 * 7 6 4 10 10 C 1.47528 * 120.87125 * 180.02562 * 9 7 6 11 11 O 1.21603 * 120.00161 * 269.98451 * 10 9 7 12 12 N 1.34783 * 120.00036 * 89.97859 * 10 9 7 13 13 C 1.40097 * 120.00185 * 180.02562 * 12 10 9 14 14 C 1.40423 * 125.97394 * 359.71448 * 13 12 10 15 15 C 1.35230 * 107.86460 * 179.89154 * 14 13 12 16 16 N 1.34966 * 107.86682 * 0.36801 * 15 14 13 17 17 C 1.46502 * 125.97503 * 179.76800 * 16 15 14 18 18 C 1.50703 * 109.47111 * 124.97686 * 17 16 15 19 19 H 1.08001 * 119.99787 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99473 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99477 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 120.00485 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46979 * 90.00323 * 22 20 18 24 24 H 1.48501 * 109.47263 * 209.99785 * 22 20 18 25 25 H 1.48497 * 109.47485 * 330.00542 * 22 20 18 26 26 N 1.31230 * 125.97537 * 180.02562 * 13 12 10 27 27 H 1.08997 * 109.46917 * 90.00166 * 1 2 3 28 28 H 1.09001 * 109.47195 * 210.00613 * 1 2 3 29 29 H 1.09008 * 109.46683 * 330.00128 * 1 2 3 30 30 H 0.97000 * 119.99918 * 359.97438 * 5 4 3 31 31 H 0.97004 * 120.00539 * 179.97438 * 5 4 3 32 32 H 1.09005 * 109.47071 * 89.99694 * 8 7 6 33 33 H 1.08994 * 109.47544 * 209.99655 * 8 7 6 34 34 H 1.09000 * 109.47001 * 330.00077 * 8 7 6 35 35 H 0.96996 * 119.99569 * 0.02562 * 12 10 9 36 36 H 1.08008 * 126.06414 * 0.03166 * 14 13 12 37 37 H 1.08007 * 126.06597 * 180.09956 * 15 14 13 38 38 H 1.09003 * 109.46881 * 244.97782 * 17 16 15 39 39 H 1.08995 * 109.46927 * 4.97128 * 17 16 15 40 40 H 0.97001 * 119.99836 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1768 1.1371 0.0000 4 6 3.5033 1.1464 0.0054 5 7 4.1645 2.3570 0.0047 6 7 4.2127 0.0253 0.0115 7 6 3.6181 -1.1528 0.0120 8 6 4.4328 -2.4206 0.0183 9 6 2.2181 -1.2074 0.0064 10 6 1.5109 -2.5021 0.0072 11 8 1.2236 -3.0387 -1.0456 12 7 1.1835 -3.0905 1.1748 13 6 0.5125 -4.3203 1.1756 14 6 0.1169 -5.0449 0.0397 15 6 -0.4964 -6.1741 0.4608 16 7 -0.4990 -6.1653 1.8104 17 6 -1.0691 -7.2001 2.6767 18 6 -0.0148 -7.6889 3.6362 19 1 0.9805 -7.2709 3.6036 20 6 -0.3209 -8.6698 4.5555 21 7 0.5993 -9.0967 5.3925 22 14 -2.0426 -9.3923 4.6122 23 1 -2.1167 -10.5665 3.7060 24 1 -2.3554 -9.8178 6.0001 25 1 -3.0243 -8.3673 4.1754 26 7 0.1387 -4.9938 2.2381 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5139 30 1 3.6597 3.1853 -0.0002 31 1 5.1342 2.3801 0.0089 32 1 4.6251 -2.7238 1.0476 33 1 3.8826 -3.2087 -0.4957 34 1 5.3800 -2.2464 -0.4920 35 1 1.4125 -2.6623 2.0145 36 1 0.2765 -4.7531 -0.9880 37 1 -0.9142 -6.9442 -0.1709 38 1 -1.9060 -6.7839 3.2375 39 1 -1.4190 -8.0326 2.0663 40 1 0.3839 -9.7865 6.0396 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001444484521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:11 Heat of formation + Delta-G solvation = 103.158570 kcal Electronic energy + Delta-G solvation = -25327.971431 eV Core-core repulsion = 21566.162978 eV Total energy + Delta-G solvation = -3761.808454 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55878 -40.65145 -39.12917 -35.64244 -35.12692 -34.81202 -33.30592 -31.81856 -31.07367 -29.69281 -29.44139 -28.25225 -27.05315 -24.26743 -22.71032 -22.14155 -21.73933 -20.36529 -19.72384 -18.61548 -17.61629 -17.40101 -17.08992 -16.57783 -16.17347 -15.80924 -15.37219 -14.85368 -14.61352 -14.22592 -14.06886 -13.70845 -13.61573 -13.22818 -13.18981 -13.12342 -12.79719 -12.56636 -12.36770 -12.34691 -12.17391 -11.85207 -11.17650 -10.99913 -10.78469 -10.68316 -10.57650 -10.10273 -10.02630 -9.73175 -9.54935 -9.46499 -8.78096 -8.62821 -8.23690 -7.57762 -6.24981 -4.27431 0.68339 0.84403 2.15421 2.62797 2.77355 2.82196 3.14469 3.21302 3.23296 3.47670 3.60694 3.72543 3.74926 4.06263 4.21580 4.44920 4.67651 4.84299 5.02754 5.07826 5.28814 5.32688 5.35686 5.41128 5.52738 5.54360 5.66954 5.81301 5.99910 6.13114 6.34631 6.40062 6.51303 6.55213 6.63603 6.83057 6.97383 7.22357 7.28932 7.51377 7.77875 8.02647 8.13580 8.31409 8.52030 8.84620 9.29891 10.87699 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.024879 B = 0.002684 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.174935 B =10429.709198 C =10741.356325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.265 3.735 3 N -0.575 5.575 4 C 0.583 3.417 5 N -0.815 5.815 6 N -0.574 5.574 7 C 0.267 3.733 8 C -0.118 4.118 9 C -0.298 4.298 10 C 0.591 3.409 11 O -0.506 6.506 12 N -0.622 5.622 13 C 0.258 3.742 14 C -0.283 4.283 15 C 0.052 3.948 16 N -0.318 5.318 17 C 0.232 3.768 18 C -0.535 4.535 19 H 0.086 0.914 20 C 0.076 3.924 21 N -0.887 5.887 22 Si 0.873 3.127 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.264 1.264 26 N -0.294 5.294 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.416 0.584 31 H 0.416 0.584 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.412 0.588 36 H 0.162 0.838 37 H 0.169 0.831 38 H 0.042 0.958 39 H 0.049 0.951 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.409 19.598 -11.684 23.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.116 3.884 3 N -0.299 5.299 4 C 0.224 3.776 5 N -0.362 5.362 6 N -0.299 5.299 7 C 0.118 3.882 8 C -0.175 4.175 9 C -0.310 4.310 10 C 0.375 3.625 11 O -0.379 6.379 12 N -0.270 5.270 13 C 0.005 3.995 14 C -0.314 4.314 15 C -0.098 4.098 16 N -0.099 5.099 17 C 0.113 3.887 18 C -0.573 4.573 19 H 0.104 0.896 20 C -0.128 4.128 21 N -0.525 5.525 22 Si 0.699 3.301 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.189 1.189 26 N -0.125 5.125 27 H 0.113 0.887 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.247 0.753 31 H 0.247 0.753 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.248 0.752 36 H 0.179 0.821 37 H 0.187 0.813 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.658 19.858 -10.940 22.965 hybrid contribution -0.815 -0.651 -0.185 1.060 sum 2.843 19.206 -11.124 22.377 Atomic orbital electron populations 1.20924 0.87200 1.04529 1.04532 1.21441 0.96923 0.85667 0.84336 1.67737 1.07272 1.30183 1.24757 1.19353 0.85243 0.86837 0.86134 1.41681 1.10039 1.03701 1.80796 1.67758 1.40063 0.97379 1.24665 1.21471 0.89382 0.93244 0.84073 1.20964 1.00363 0.91632 1.04574 1.20804 0.95609 0.94913 1.19678 1.17521 0.78246 0.83560 0.83208 1.90751 1.52384 1.63666 1.31106 1.42504 1.56125 1.18781 1.09549 1.19091 0.98995 0.88118 0.93291 1.21546 1.12922 0.97127 0.99824 1.22567 1.01928 0.99712 0.85553 1.48637 1.41481 1.15434 1.04395 1.20060 0.95183 0.83376 0.90110 1.21102 0.98440 1.21543 1.16191 0.89620 1.24834 0.97197 0.95908 0.94824 1.69875 1.33458 1.29184 1.19941 0.86909 0.84773 0.80113 0.78323 1.19700 1.20542 1.18855 1.77418 1.18291 0.96981 1.19769 0.88725 0.89758 0.89233 0.75305 0.75271 0.88669 0.89370 0.89194 0.75220 0.82055 0.81341 0.93997 0.93294 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 9.86 36.01 0.35 -0.73 16 2 C 0.27 3.10 6.87 -81.83 -0.56 2.54 16 3 N -0.57 -6.63 10.37 -9.89 -0.10 -6.74 16 4 C 0.58 6.37 8.65 -323.05 -2.79 3.57 16 5 N -0.81 -5.49 9.04 29.73 0.27 -5.22 16 6 N -0.57 -6.76 10.37 -9.89 -0.10 -6.86 16 7 C 0.27 3.21 6.87 -81.83 -0.56 2.65 16 8 C -0.12 -1.21 9.85 36.01 0.35 -0.86 16 9 C -0.30 -3.75 5.66 -104.70 -0.59 -4.34 16 10 C 0.59 8.47 4.45 -12.47 -0.06 8.42 16 11 O -0.51 -8.55 14.23 5.28 0.08 -8.47 16 12 N -0.62 -9.33 5.44 -12.08 -0.07 -9.40 16 13 C 0.26 4.90 8.11 -154.43 -1.25 3.65 16 14 C -0.28 -5.22 9.60 -39.83 -0.38 -5.60 16 15 C 0.05 0.95 11.43 -17.24 -0.20 0.76 16 16 N -0.32 -6.96 3.67 -62.56 -0.23 -7.19 16 17 C 0.23 5.36 5.33 -5.19 -0.03 5.33 16 18 C -0.53 -14.83 9.79 -34.44 -0.34 -15.16 16 19 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 20 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 21 N -0.89 -26.32 13.96 55.43 0.77 -25.55 16 22 Si 0.87 19.84 27.47 -169.99 -4.67 15.18 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 26 N -0.29 -6.49 12.42 31.43 0.39 -6.10 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 0.85 7.17 -51.93 -0.37 0.47 16 29 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.42 1.99 8.94 -40.82 -0.36 1.63 16 31 H 0.42 2.04 8.94 -40.82 -0.36 1.67 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 1.00 7.18 -51.93 -0.37 0.63 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.41 5.37 8.81 -40.82 -0.36 5.01 16 36 H 0.16 2.87 5.91 -52.48 -0.31 2.56 16 37 H 0.17 2.44 8.06 -52.48 -0.42 2.01 16 38 H 0.04 0.97 7.20 -51.93 -0.37 0.59 16 39 H 0.05 1.02 7.50 -51.93 -0.39 0.63 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 348.29 15.07 5.25 5.25 Total: -1.00 -34.51 348.29 -9.17 -43.68 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -4.61 Total: 9.20 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -6.15 Total: 2.22 kcal Atomic # 7 Polarization: -67.99 SS G_CDS: 0.93 Total: -67.06 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.08 Total: -8.47 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.67 Total: 15.18 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.51 -9.17 -43.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001444484521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.838 kcal (2) G-P(sol) polarization free energy of solvation -34.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds