Wall clock time and date at job start Tue Mar 31 2020 11:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31964 * 120.49737 * 2 1 4 4 C 1.32661 * 120.90018 * 179.72762 * 3 2 1 5 5 N 1.37936 * 119.04265 * 179.97438 * 4 3 2 6 6 N 1.32667 * 121.92043 * 359.97438 * 4 3 2 7 7 C 1.31965 * 120.89738 * 0.02562 * 6 4 3 8 8 C 1.50700 * 120.49597 * 179.97438 * 7 6 4 9 9 C 1.40113 * 119.01046 * 359.97438 * 7 6 4 10 10 C 1.47528 * 120.87125 * 180.02562 * 9 7 6 11 11 O 1.21603 * 120.00161 * 269.98451 * 10 9 7 12 12 N 1.34783 * 120.00036 * 89.97859 * 10 9 7 13 13 C 1.40097 * 120.00185 * 180.02562 * 12 10 9 14 14 C 1.40423 * 125.97394 * 359.71448 * 13 12 10 15 15 C 1.35230 * 107.86460 * 179.89154 * 14 13 12 16 16 N 1.34966 * 107.86682 * 0.36801 * 15 14 13 17 17 C 1.46502 * 125.97503 * 179.76800 * 16 15 14 18 18 C 1.50703 * 109.47111 * 124.97686 * 17 16 15 19 19 H 1.08001 * 119.99787 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99473 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99477 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 120.00485 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46979 * 90.00323 * 22 20 18 24 24 H 1.48501 * 109.47263 * 209.99785 * 22 20 18 25 25 H 1.48497 * 109.47485 * 330.00542 * 22 20 18 26 26 N 1.31230 * 125.97537 * 180.02562 * 13 12 10 27 27 H 1.08997 * 109.46917 * 90.00166 * 1 2 3 28 28 H 1.09001 * 109.47195 * 210.00613 * 1 2 3 29 29 H 1.09008 * 109.46683 * 330.00128 * 1 2 3 30 30 H 0.97000 * 119.99918 * 359.97438 * 5 4 3 31 31 H 0.97004 * 120.00539 * 179.97438 * 5 4 3 32 32 H 1.09005 * 109.47071 * 89.99694 * 8 7 6 33 33 H 1.08994 * 109.47544 * 209.99655 * 8 7 6 34 34 H 1.09000 * 109.47001 * 330.00077 * 8 7 6 35 35 H 0.96996 * 119.99569 * 0.02562 * 12 10 9 36 36 H 1.08008 * 126.06414 * 0.03166 * 14 13 12 37 37 H 1.08007 * 126.06597 * 180.09956 * 15 14 13 38 38 H 1.09003 * 109.46881 * 244.97782 * 17 16 15 39 39 H 1.08995 * 109.46927 * 4.97128 * 17 16 15 40 40 H 0.97001 * 119.99836 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1768 1.1371 0.0000 4 6 3.5033 1.1464 0.0054 5 7 4.1645 2.3570 0.0047 6 7 4.2127 0.0253 0.0115 7 6 3.6181 -1.1528 0.0120 8 6 4.4328 -2.4206 0.0183 9 6 2.2181 -1.2074 0.0064 10 6 1.5109 -2.5021 0.0072 11 8 1.2236 -3.0387 -1.0456 12 7 1.1835 -3.0905 1.1748 13 6 0.5125 -4.3203 1.1756 14 6 0.1169 -5.0449 0.0397 15 6 -0.4964 -6.1741 0.4608 16 7 -0.4990 -6.1653 1.8104 17 6 -1.0691 -7.2001 2.6767 18 6 -0.0148 -7.6889 3.6362 19 1 0.9805 -7.2709 3.6036 20 6 -0.3209 -8.6698 4.5555 21 7 0.5993 -9.0967 5.3925 22 14 -2.0426 -9.3923 4.6122 23 1 -2.1167 -10.5665 3.7060 24 1 -2.3554 -9.8178 6.0001 25 1 -3.0243 -8.3673 4.1754 26 7 0.1387 -4.9938 2.2381 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5139 30 1 3.6597 3.1853 -0.0002 31 1 5.1342 2.3801 0.0089 32 1 4.6251 -2.7238 1.0476 33 1 3.8826 -3.2087 -0.4957 34 1 5.3800 -2.2464 -0.4920 35 1 1.4125 -2.6623 2.0145 36 1 0.2765 -4.7531 -0.9880 37 1 -0.9142 -6.9442 -0.1709 38 1 -1.9060 -6.7839 3.2375 39 1 -1.4190 -8.0326 2.0663 40 1 0.3839 -9.7865 6.0396 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001444484521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:11 Heat of formation + Delta-G solvation = 78.940396 kcal Electronic energy + Delta-G solvation = -25329.021610 eV Core-core repulsion = 21566.162978 eV Total energy + Delta-G solvation = -3762.858632 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.56121 -42.01428 -40.36499 -36.44627 -36.23254 -35.98722 -35.17016 -33.22447 -32.29093 -30.95819 -30.52505 -29.38558 -28.60174 -25.38182 -24.31719 -23.00728 -22.98837 -21.87433 -21.09514 -19.46621 -19.08904 -18.74914 -18.22851 -18.06565 -17.20073 -16.90181 -16.45823 -16.34721 -15.98362 -15.67170 -15.13923 -14.90471 -14.80469 -14.49929 -14.36184 -14.13108 -13.97635 -13.82918 -13.79360 -13.60385 -13.13585 -13.02461 -12.80113 -12.49185 -12.31183 -11.82180 -11.77447 -11.60933 -11.45081 -11.42819 -10.98534 -10.84988 -10.35565 -9.75888 -9.43808 -9.10863 -8.35625 -6.45638 -0.22129 -0.04306 0.84718 1.29564 1.37630 1.40990 1.44103 1.51590 2.01061 2.19223 2.30695 2.33891 2.60357 2.87439 2.97237 3.21102 3.46580 3.77116 3.95445 3.99104 4.23044 4.23847 4.51671 4.54582 4.58006 4.62561 4.71152 4.75310 4.77521 4.88716 4.93088 5.03287 5.12764 5.20667 5.27057 5.75052 5.87414 6.02513 6.14765 6.21454 6.23790 6.42929 6.60578 6.90899 7.04228 7.17374 7.26070 8.81436 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.024879 B = 0.002684 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.174935 B =10429.709198 C =10741.356325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.265 3.735 3 N -0.581 5.581 4 C 0.573 3.427 5 N -0.792 5.792 6 N -0.583 5.583 7 C 0.264 3.736 8 C -0.116 4.116 9 C -0.316 4.316 10 C 0.605 3.395 11 O -0.530 6.530 12 N -0.616 5.616 13 C 0.266 3.734 14 C -0.291 4.291 15 C 0.062 3.938 16 N -0.343 5.343 17 C 0.239 3.761 18 C -0.545 4.545 19 H 0.027 0.973 20 C 0.014 3.986 21 N -0.943 5.943 22 Si 0.954 3.046 23 H -0.253 1.253 24 H -0.283 1.283 25 H -0.238 1.238 26 N -0.345 5.345 27 H 0.103 0.897 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.427 0.573 31 H 0.426 0.574 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.420 0.580 36 H 0.170 0.830 37 H 0.211 0.789 38 H 0.046 0.954 39 H 0.082 0.918 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.899 20.423 -13.063 24.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.116 3.884 3 N -0.306 5.306 4 C 0.214 3.786 5 N -0.341 5.341 6 N -0.308 5.308 7 C 0.115 3.885 8 C -0.173 4.173 9 C -0.328 4.328 10 C 0.390 3.610 11 O -0.405 6.405 12 N -0.264 5.264 13 C 0.012 3.988 14 C -0.322 4.322 15 C -0.086 4.086 16 N -0.125 5.125 17 C 0.119 3.881 18 C -0.583 4.583 19 H 0.046 0.954 20 C -0.185 4.185 21 N -0.582 5.582 22 Si 0.775 3.225 23 H -0.178 1.178 24 H -0.208 1.208 25 H -0.161 1.161 26 N -0.175 5.175 27 H 0.121 0.879 28 H 0.095 0.905 29 H 0.124 0.876 30 H 0.260 0.740 31 H 0.260 0.740 32 H 0.120 0.880 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.257 0.743 36 H 0.188 0.812 37 H 0.228 0.772 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.187 20.769 -12.343 24.259 hybrid contribution -0.158 -0.721 0.189 0.762 sum 2.029 20.048 -12.154 23.532 Atomic orbital electron populations 1.20968 0.85888 1.04933 1.05135 1.21750 0.97862 0.85417 0.83421 1.67831 1.07526 1.29814 1.25463 1.19756 0.85433 0.87751 0.85680 1.41715 1.10713 1.02897 1.78764 1.67826 1.40018 0.97481 1.25493 1.21687 0.89354 0.93932 0.83545 1.20972 1.00627 0.90648 1.05020 1.20637 0.95862 0.94081 1.22185 1.17714 0.77244 0.83683 0.82351 1.90721 1.53359 1.64501 1.31878 1.42593 1.55697 1.17696 1.10443 1.19403 0.97758 0.88739 0.92922 1.21749 1.13128 0.97332 0.99953 1.23265 1.00501 1.00345 0.84495 1.48517 1.42991 1.15547 1.05432 1.19893 0.93562 0.84581 0.90046 1.21238 0.97441 1.21682 1.17983 0.95443 1.25919 1.02595 0.96128 0.93855 1.70056 1.36586 1.30333 1.21215 0.85629 0.78320 0.80004 0.78508 1.17756 1.20819 1.16133 1.77338 1.20457 0.98129 1.21601 0.87909 0.90542 0.87577 0.73989 0.74036 0.87973 0.90665 0.87736 0.74268 0.81248 0.77206 0.93630 0.89986 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.00 9.86 71.24 0.70 -1.30 16 2 C 0.26 5.94 6.87 43.00 0.30 6.23 16 3 N -0.58 -12.58 10.37 -185.20 -1.92 -14.50 16 4 C 0.57 11.64 8.65 261.57 2.26 13.90 16 5 N -0.79 -9.05 9.04 -59.86 -0.54 -9.59 16 6 N -0.58 -13.06 10.37 -185.21 -1.92 -14.98 16 7 C 0.26 6.19 6.87 42.99 0.30 6.49 16 8 C -0.12 -2.34 9.85 71.24 0.70 -1.64 16 9 C -0.32 -7.80 5.66 -19.92 -0.11 -7.91 16 10 C 0.60 17.26 4.45 86.69 0.39 17.65 16 11 O -0.53 -17.76 14.23 -4.04 -0.06 -17.82 16 12 N -0.62 -18.65 5.44 -310.37 -1.69 -20.34 16 13 C 0.27 10.16 8.11 133.35 1.08 11.24 16 14 C -0.29 -10.48 9.60 22.11 0.21 -10.27 16 15 C 0.06 2.18 11.43 83.52 0.95 3.13 16 16 N -0.34 -14.88 3.67 -351.84 -1.29 -16.17 16 17 C 0.24 10.79 5.33 85.63 0.46 11.25 16 18 C -0.55 -31.01 9.79 25.60 0.25 -30.76 16 19 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 20 C 0.01 0.77 5.47 84.65 0.46 1.23 16 21 N -0.94 -57.72 13.96 21.45 0.30 -57.42 16 22 Si 0.95 40.16 27.47 68.60 1.88 42.05 16 23 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 24 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.24 -8.98 6.54 99.48 0.65 -8.33 16 26 N -0.34 -15.53 12.42 -54.47 -0.68 -16.21 16 27 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.08 1.49 7.17 -2.39 -0.02 1.47 16 29 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.43 3.12 8.94 -92.71 -0.83 2.29 16 31 H 0.43 3.25 8.94 -92.71 -0.83 2.42 16 32 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.07 1.72 7.18 -2.39 -0.02 1.70 16 34 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.42 11.19 8.81 -92.71 -0.82 10.37 16 36 H 0.17 5.85 5.91 -2.91 -0.02 5.83 16 37 H 0.21 5.33 8.06 -2.91 -0.02 5.31 16 38 H 0.05 2.02 7.20 -2.39 -0.02 2.00 16 39 H 0.08 3.16 7.50 -2.39 -0.02 3.14 16 40 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -77.46 348.29 0.64 -76.82 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: -1.39 Total: 28.93 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 7.95 Total: 19.24 kcal Atomic # 7 Polarization: -141.48 SS G_CDS: -7.74 Total: -149.22 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.06 Total: -17.82 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 1.88 Total: 42.05 kcal Total: -77.46 0.64 -76.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001444484521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.757 kcal (2) G-P(sol) polarization free energy of solvation -77.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds