Wall clock time and date at job start Tue Mar 31 2020 10:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38305 * 119.93219 * 2 1 4 4 C 1.38107 * 120.06382 * 180.02562 * 3 2 1 5 5 C 1.38852 * 119.93047 * 359.97438 * 4 3 2 6 6 N 1.40200 * 120.06031 * 180.02562 * 5 4 3 7 7 C 1.37858 * 126.53296 * 64.66617 * 6 5 4 8 8 C 1.34397 * 106.94507 * 179.89347 * 7 6 5 9 9 N 1.34371 * 108.40721 * 0.37264 * 8 7 6 10 10 C 1.31283 * 109.35769 * 359.76256 * 9 8 7 11 11 S 1.76200 * 125.81959 * 180.02562 * 10 9 8 12 12 C 1.80995 * 100.00108 * 359.95989 * 11 10 9 13 13 H 1.08996 * 109.47397 * 304.99623 * 12 11 10 14 14 C 1.52999 * 109.47366 * 64.99975 * 12 11 10 15 15 C 1.52999 * 109.47202 * 184.99662 * 12 11 10 16 16 C 1.50701 * 109.46978 * 65.00028 * 15 12 11 17 17 H 1.08002 * 120.00335 * 359.97438 * 16 15 12 18 18 C 1.37878 * 120.00074 * 180.02562 * 16 15 12 19 19 N 1.31515 * 120.00122 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00151 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46970 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47240 * 119.99571 * 20 18 16 23 23 H 1.48499 * 109.47403 * 240.00002 * 20 18 16 24 24 C 1.38801 * 119.87063 * 359.97438 * 5 4 3 25 25 C 1.50696 * 120.03078 * 179.97438 * 24 5 4 26 26 C 1.38137 * 119.93589 * 0.02562 * 24 5 4 27 27 H 1.08998 * 109.47263 * 89.99565 * 1 2 3 28 28 H 1.08997 * 109.47147 * 210.00441 * 1 2 3 29 29 H 1.09006 * 109.47142 * 329.99595 * 1 2 3 30 30 H 1.07997 * 119.97020 * 359.72447 * 3 2 1 31 31 H 1.07993 * 120.03071 * 180.02562 * 4 3 2 32 32 H 1.08000 * 126.52440 * 0.04287 * 7 6 5 33 33 H 1.08006 * 125.79386 * 180.09561 * 8 7 6 34 34 H 1.09000 * 109.46988 * 299.99758 * 14 12 11 35 35 H 1.09006 * 109.47160 * 59.99523 * 14 12 11 36 36 H 1.09000 * 109.47364 * 180.02562 * 14 12 11 37 37 H 1.08999 * 109.47576 * 184.99953 * 15 12 11 38 38 H 1.09000 * 109.47440 * 305.00426 * 15 12 11 39 39 H 0.96999 * 120.00185 * 179.97438 * 19 18 16 40 40 H 1.09006 * 109.47372 * 270.02265 * 25 24 5 41 41 H 1.08999 * 109.47375 * 30.02401 * 25 24 5 42 42 H 1.08996 * 109.47318 * 150.02710 * 25 24 5 43 43 H 1.08008 * 119.96976 * 179.97438 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1986 0.0000 4 6 3.5782 1.2017 -0.0005 5 6 4.2737 0.0000 -0.0005 6 7 5.6757 0.0001 -0.0005 7 6 6.4964 0.4741 1.0006 8 6 7.7626 0.2791 0.5944 9 7 7.7349 -0.2895 -0.6227 10 6 6.4876 -0.4634 -0.9935 11 16 5.9536 -1.1750 -2.5145 12 6 7.5570 -1.5291 -3.2759 13 1 8.1515 -0.6162 -3.3123 14 6 8.2930 -2.5842 -2.4477 15 6 7.3420 -2.0547 -4.6965 16 6 6.7281 -0.9714 -5.5454 17 1 6.5124 -0.0048 -5.1146 18 6 6.4407 -1.2145 -6.8718 19 7 6.7019 -2.3920 -7.3961 20 14 5.6791 0.1280 -7.9238 21 1 5.4841 1.3497 -7.1024 22 1 6.5808 0.4357 -9.0629 23 1 4.3665 -0.3340 -8.4423 24 6 3.5783 -1.2012 0.0005 25 6 4.3296 -2.5076 0.0000 26 6 2.1970 -1.1981 0.0011 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5139 30 1 1.6555 2.1329 -0.0045 31 1 4.1165 2.1379 -0.0001 32 1 6.1816 0.9155 1.9347 33 1 8.6514 0.5398 1.1499 34 1 8.4463 -2.2098 -1.4356 35 1 7.6985 -3.4972 -2.4112 36 1 9.2588 -2.7972 -2.9060 37 1 8.3002 -2.3514 -5.1232 38 1 6.6746 -2.9160 -4.6682 39 1 6.4994 -2.5632 -8.3292 40 1 4.5099 -2.8226 -1.0279 41 1 5.2826 -2.3789 0.5130 42 1 3.7396 -3.2662 0.5142 43 1 1.6553 -2.1325 0.0015 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001458855403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:12 Heat of formation + Delta-G solvation = 71.753423 kcal Electronic energy + Delta-G solvation = -23806.565528 eV Core-core repulsion = 20557.395708 eV Total energy + Delta-G solvation = -3249.169820 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.88655 -39.45817 -34.84907 -34.36223 -32.77806 -32.02556 -31.13323 -29.36575 -27.37274 -27.32826 -26.44489 -23.24662 -22.78142 -21.98727 -21.08963 -20.94434 -19.95362 -18.30236 -16.34838 -16.29440 -15.77806 -15.21493 -14.78669 -14.54962 -14.45334 -14.25722 -14.13728 -13.88330 -13.38537 -13.29925 -13.24845 -12.90264 -12.66746 -12.42255 -12.23764 -11.85279 -11.68956 -11.52399 -11.48532 -11.30351 -11.11715 -10.74553 -10.57563 -10.48494 -9.91028 -9.72950 -9.45579 -9.38537 -9.15051 -8.95120 -8.95060 -8.52738 -8.37239 -6.79923 -6.02069 -4.03641 0.91807 1.17445 1.87803 2.12891 2.92251 3.16837 3.28132 3.32196 3.39733 3.43706 3.45693 4.46748 4.57076 4.62326 4.67710 4.89399 5.06819 5.08795 5.34317 5.35347 5.38058 5.38925 5.47264 5.54908 5.68238 5.71087 5.76595 5.79088 5.86039 5.98930 6.07936 6.13983 6.22611 6.25652 6.35738 6.41068 6.64768 6.66513 6.70787 6.78600 6.98355 7.31305 7.54895 7.60695 7.95762 8.14187 8.33208 9.01792 9.60536 11.09089 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011281 B = 0.004690 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.445087 B = 5968.536104 C = 7357.150871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.073 4.073 3 C -0.119 4.119 4 C -0.096 4.096 5 C 0.106 3.894 6 N -0.407 5.407 7 C -0.061 4.061 8 C -0.017 4.017 9 N -0.489 5.489 10 C 0.212 3.788 11 S 0.001 5.999 12 C -0.053 4.053 13 H 0.088 0.912 14 C -0.146 4.146 15 C 0.036 3.964 16 C -0.519 4.519 17 H 0.063 0.937 18 C 0.060 3.940 19 N -0.894 5.894 20 Si 0.890 3.110 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.054 4.054 25 C -0.126 4.126 26 C -0.112 4.112 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.171 0.829 33 H 0.169 0.831 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.039 0.961 38 H 0.025 0.975 39 H 0.260 0.740 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.130 3.557 19.093 21.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.073 4.073 3 C -0.138 4.138 4 C -0.115 4.115 5 C 0.016 3.984 6 N -0.091 5.091 7 C -0.194 4.194 8 C -0.166 4.166 9 N -0.211 5.211 10 C -0.156 4.156 11 S 0.233 5.767 12 C -0.182 4.182 13 H 0.106 0.894 14 C -0.205 4.205 15 C -0.002 4.002 16 C -0.558 4.558 17 H 0.081 0.919 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.717 3.283 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.056 4.056 25 C -0.183 4.183 26 C -0.131 4.131 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.188 0.812 33 H 0.186 0.814 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.044 0.956 39 H 0.070 0.930 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.638 3.049 18.044 20.682 hybrid contribution 0.286 1.368 0.342 1.439 sum -9.351 4.417 18.385 21.094 Atomic orbital electron populations 1.20819 0.90761 1.02828 1.02775 1.20013 0.96383 0.92953 0.97945 1.20863 0.93071 0.97963 1.01870 1.21105 0.94506 0.96717 0.99200 1.17459 0.80438 0.93922 1.06630 1.42902 1.03801 1.47533 1.14848 1.22718 0.90771 1.10003 0.95912 1.22281 0.96052 1.03994 0.94232 1.70878 1.16910 1.20176 1.13136 1.26220 0.87656 1.04354 0.97381 1.86044 1.14634 1.73225 1.02793 1.23556 0.92480 1.02165 1.00017 0.89363 1.22117 0.99939 0.98023 1.00428 1.19095 0.98301 0.96861 0.85966 1.21313 1.40602 0.98964 0.94900 0.91869 1.24973 0.95704 0.95457 0.97974 1.69964 1.48202 1.21543 1.13650 0.86559 0.78955 0.82358 0.80388 1.19561 1.21009 1.20990 1.19958 0.93933 0.94442 0.97228 1.21012 0.99640 0.93134 1.04492 1.20828 0.92470 0.98105 1.01693 0.90674 0.91351 0.91430 0.85307 0.85440 0.81217 0.81359 0.91430 0.92955 0.92361 0.94333 0.95622 0.92995 0.88622 0.91713 0.91238 0.85096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.01 36.01 0.36 -0.48 16 2 C -0.07 -0.75 5.88 -104.59 -0.62 -1.36 16 3 C -0.12 -1.27 9.69 -39.60 -0.38 -1.65 16 4 C -0.10 -1.21 9.92 -39.40 -0.39 -1.60 16 5 C 0.11 1.53 5.47 -83.59 -0.46 1.07 16 6 N -0.41 -6.44 2.11 -60.74 -0.13 -6.57 16 7 C -0.06 -0.84 11.50 -16.20 -0.19 -1.03 16 8 C -0.02 -0.25 11.84 -17.80 -0.21 -0.46 16 9 N -0.49 -9.03 8.71 -13.38 -0.12 -9.14 16 10 C 0.21 3.92 6.59 -88.49 -0.58 3.33 16 11 S 0.00 0.02 18.59 -107.50 -2.00 -1.98 16 12 C -0.05 -1.15 2.27 -26.73 -0.06 -1.21 16 13 H 0.09 2.02 8.14 -51.92 -0.42 1.60 16 14 C -0.15 -2.75 9.01 37.16 0.33 -2.42 16 15 C 0.04 0.93 4.44 -27.88 -0.12 0.81 16 16 C -0.52 -14.51 8.53 -34.44 -0.29 -14.80 16 17 H 0.06 1.77 7.60 -52.49 -0.40 1.37 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 20 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 C -0.05 -0.72 5.74 -104.45 -0.60 -1.32 16 25 C -0.13 -1.65 8.64 36.00 0.31 -1.34 16 26 C -0.11 -1.27 9.35 -39.61 -0.37 -1.64 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 29 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.17 1.97 8.06 -52.48 -0.42 1.55 16 34 H 0.07 1.25 5.88 -51.93 -0.31 0.95 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.10 1.39 6.78 -51.93 -0.35 1.04 16 41 H 0.06 0.93 7.15 -51.93 -0.37 0.56 16 42 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 43 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 367.01 15.07 5.53 5.53 Total: -1.00 -31.67 367.01 -10.84 -42.51 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.47 Total: 1.10 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -3.37 Total: -22.48 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.49 Total: -41.49 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -2.00 Total: -1.98 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.67 -10.84 -42.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001458855403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.264 kcal (2) G-P(sol) polarization free energy of solvation -31.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds