Wall clock time and date at job start Tue Mar 31 2020 10:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38305 * 119.93219 * 2 1 4 4 C 1.38107 * 120.06382 * 180.02562 * 3 2 1 5 5 C 1.38852 * 119.93047 * 359.97438 * 4 3 2 6 6 N 1.40200 * 120.06031 * 180.02562 * 5 4 3 7 7 C 1.37858 * 126.53296 * 64.66617 * 6 5 4 8 8 C 1.34397 * 106.94507 * 179.89347 * 7 6 5 9 9 N 1.34371 * 108.40721 * 0.37264 * 8 7 6 10 10 C 1.31283 * 109.35769 * 359.76256 * 9 8 7 11 11 S 1.76200 * 125.81959 * 180.02562 * 10 9 8 12 12 C 1.80995 * 100.00108 * 359.95989 * 11 10 9 13 13 H 1.08996 * 109.47397 * 304.99623 * 12 11 10 14 14 C 1.52999 * 109.47366 * 64.99975 * 12 11 10 15 15 C 1.52999 * 109.47202 * 184.99662 * 12 11 10 16 16 C 1.50701 * 109.46978 * 65.00028 * 15 12 11 17 17 H 1.08002 * 120.00335 * 359.97438 * 16 15 12 18 18 C 1.37878 * 120.00074 * 180.02562 * 16 15 12 19 19 N 1.31515 * 120.00122 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00151 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46970 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47240 * 119.99571 * 20 18 16 23 23 H 1.48499 * 109.47403 * 240.00002 * 20 18 16 24 24 C 1.38801 * 119.87063 * 359.97438 * 5 4 3 25 25 C 1.50696 * 120.03078 * 179.97438 * 24 5 4 26 26 C 1.38137 * 119.93589 * 0.02562 * 24 5 4 27 27 H 1.08998 * 109.47263 * 89.99565 * 1 2 3 28 28 H 1.08997 * 109.47147 * 210.00441 * 1 2 3 29 29 H 1.09006 * 109.47142 * 329.99595 * 1 2 3 30 30 H 1.07997 * 119.97020 * 359.72447 * 3 2 1 31 31 H 1.07993 * 120.03071 * 180.02562 * 4 3 2 32 32 H 1.08000 * 126.52440 * 0.04287 * 7 6 5 33 33 H 1.08006 * 125.79386 * 180.09561 * 8 7 6 34 34 H 1.09000 * 109.46988 * 299.99758 * 14 12 11 35 35 H 1.09006 * 109.47160 * 59.99523 * 14 12 11 36 36 H 1.09000 * 109.47364 * 180.02562 * 14 12 11 37 37 H 1.08999 * 109.47576 * 184.99953 * 15 12 11 38 38 H 1.09000 * 109.47440 * 305.00426 * 15 12 11 39 39 H 0.96999 * 120.00185 * 179.97438 * 19 18 16 40 40 H 1.09006 * 109.47372 * 270.02265 * 25 24 5 41 41 H 1.08999 * 109.47375 * 30.02401 * 25 24 5 42 42 H 1.08996 * 109.47318 * 150.02710 * 25 24 5 43 43 H 1.08008 * 119.96976 * 179.97438 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1986 0.0000 4 6 3.5782 1.2017 -0.0005 5 6 4.2737 0.0000 -0.0005 6 7 5.6757 0.0001 -0.0005 7 6 6.4964 0.4741 1.0006 8 6 7.7626 0.2791 0.5944 9 7 7.7349 -0.2895 -0.6227 10 6 6.4876 -0.4634 -0.9935 11 16 5.9536 -1.1750 -2.5145 12 6 7.5570 -1.5291 -3.2759 13 1 8.1515 -0.6162 -3.3123 14 6 8.2930 -2.5842 -2.4477 15 6 7.3420 -2.0547 -4.6965 16 6 6.7281 -0.9714 -5.5454 17 1 6.5124 -0.0048 -5.1146 18 6 6.4407 -1.2145 -6.8718 19 7 6.7019 -2.3920 -7.3961 20 14 5.6791 0.1280 -7.9238 21 1 5.4841 1.3497 -7.1024 22 1 6.5808 0.4357 -9.0629 23 1 4.3665 -0.3340 -8.4423 24 6 3.5783 -1.2012 0.0005 25 6 4.3296 -2.5076 0.0000 26 6 2.1970 -1.1981 0.0011 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5139 30 1 1.6555 2.1329 -0.0045 31 1 4.1165 2.1379 -0.0001 32 1 6.1816 0.9155 1.9347 33 1 8.6514 0.5398 1.1499 34 1 8.4463 -2.2098 -1.4356 35 1 7.6985 -3.4972 -2.4112 36 1 9.2588 -2.7972 -2.9060 37 1 8.3002 -2.3514 -5.1232 38 1 6.6746 -2.9160 -4.6682 39 1 6.4994 -2.5632 -8.3292 40 1 4.5099 -2.8226 -1.0279 41 1 5.2826 -2.3789 0.5130 42 1 3.7396 -3.2662 0.5142 43 1 1.6553 -2.1325 0.0015 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001458855403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:11 Heat of formation + Delta-G solvation = 57.909221 kcal Electronic energy + Delta-G solvation = -23807.165857 eV Core-core repulsion = 20557.395708 eV Total energy + Delta-G solvation = -3249.770149 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.07200 -40.38340 -36.50836 -35.63209 -34.08583 -33.71982 -32.07271 -30.62269 -29.26329 -28.26062 -27.33184 -25.25975 -23.77452 -23.18837 -22.46085 -22.11762 -21.27699 -19.41669 -18.51861 -17.32449 -17.21537 -16.56923 -16.26428 -15.97096 -15.61161 -15.38572 -15.23822 -14.89147 -14.74040 -14.33049 -14.22938 -14.19301 -14.08561 -13.66748 -13.45937 -13.30296 -13.01901 -12.93700 -12.66078 -12.61527 -12.42027 -12.37939 -12.35751 -12.14369 -11.53520 -11.33325 -11.05498 -10.99754 -10.91616 -10.55045 -10.28378 -9.85961 -9.48780 -8.27789 -8.20688 -6.29456 -0.02396 0.28118 0.42534 0.93995 1.37900 1.39122 1.41708 1.52399 1.92234 2.04455 2.40727 2.54780 3.13910 3.71857 3.74188 3.82603 3.90419 4.12380 4.25751 4.27402 4.27877 4.37186 4.52295 4.53755 4.57731 4.61306 4.67132 4.70187 4.87377 4.92710 4.93850 5.01690 5.07024 5.12619 5.20559 5.25109 5.28494 5.38231 5.43604 5.50300 5.54832 5.72400 5.77108 5.79888 6.17592 6.19775 6.81974 6.90751 7.38417 8.91144 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011281 B = 0.004690 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.445087 B = 5968.536104 C = 7357.150871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.069 4.069 3 C -0.118 4.118 4 C -0.105 4.105 5 C 0.073 3.927 6 N -0.400 5.400 7 C -0.042 4.042 8 C -0.035 4.035 9 N -0.513 5.513 10 C 0.186 3.814 11 S -0.017 6.017 12 C -0.045 4.045 13 H 0.070 0.930 14 C -0.134 4.134 15 C 0.046 3.954 16 C -0.532 4.532 17 H 0.058 0.942 18 C 0.009 3.991 19 N -0.928 5.928 20 Si 0.955 3.045 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.071 4.071 25 C -0.120 4.120 26 C -0.118 4.118 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.157 0.843 31 H 0.131 0.869 32 H 0.209 0.791 33 H 0.198 0.802 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.017 0.983 38 H 0.005 0.995 39 H 0.264 0.736 40 H 0.075 0.925 41 H 0.046 0.954 42 H 0.093 0.907 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.215 5.068 20.771 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.069 4.069 3 C -0.136 4.136 4 C -0.124 4.124 5 C -0.017 4.017 6 N -0.083 5.083 7 C -0.175 4.175 8 C -0.183 4.183 9 N -0.236 5.236 10 C -0.182 4.182 11 S 0.215 5.785 12 C -0.174 4.174 13 H 0.089 0.911 14 C -0.193 4.193 15 C 0.008 3.992 16 C -0.570 4.570 17 H 0.076 0.924 18 C -0.189 4.189 19 N -0.568 5.568 20 Si 0.780 3.220 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.201 1.201 24 C -0.072 4.072 25 C -0.176 4.176 26 C -0.136 4.136 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.174 0.826 31 H 0.149 0.851 32 H 0.226 0.774 33 H 0.215 0.785 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.035 0.965 38 H 0.024 0.976 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.732 4.560 19.725 23.399 hybrid contribution 0.864 0.949 -0.021 1.284 sum -10.869 5.509 19.704 23.167 Atomic orbital electron populations 1.20895 0.88319 1.04408 1.03424 1.20428 0.98138 0.92370 0.95995 1.21230 0.92393 0.99410 1.00581 1.21267 0.95499 0.96193 0.99477 1.17784 0.79771 0.95118 1.09024 1.43014 1.04613 1.46344 1.14292 1.23392 0.90156 1.07734 0.96212 1.22837 0.97848 1.04201 0.93427 1.70785 1.17296 1.20628 1.14898 1.25614 0.88396 1.06785 0.97446 1.85818 1.13315 1.74545 1.04811 1.23226 0.93721 1.01885 0.98603 0.91139 1.22003 0.99851 0.97281 1.00139 1.18865 0.96395 0.95741 0.88233 1.21559 1.40720 0.99176 0.95572 0.92424 1.25798 0.96138 0.97702 0.99260 1.70072 1.49207 1.23365 1.14186 0.85542 0.78336 0.79511 0.78629 1.19156 1.20190 1.20129 1.20096 0.94946 0.94009 0.98161 1.20911 0.99340 0.94150 1.03234 1.21140 0.91748 0.99636 1.01091 0.90287 0.90044 0.89723 0.82579 0.85061 0.77442 0.78505 0.90873 0.92505 0.91793 0.96495 0.97639 0.92675 0.90664 0.93450 0.88806 0.83113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.01 71.24 0.71 -0.54 16 2 C -0.07 -1.23 5.88 -19.84 -0.12 -1.34 16 3 C -0.12 -2.19 9.69 22.25 0.22 -1.97 16 4 C -0.11 -2.48 9.92 22.39 0.22 -2.26 16 5 C 0.07 2.04 5.47 38.08 0.21 2.25 16 6 N -0.40 -12.42 2.11 -346.07 -0.73 -13.15 16 7 C -0.04 -1.08 11.50 82.87 0.95 -0.12 16 8 C -0.03 -0.99 11.84 83.43 0.99 0.00 16 9 N -0.51 -19.00 8.71 -196.23 -1.71 -20.71 16 10 C 0.19 6.96 6.59 179.60 1.18 8.14 16 11 S -0.02 -0.70 18.59 -56.49 -1.05 -1.75 16 12 C -0.04 -2.03 2.27 30.59 0.07 -1.96 16 13 H 0.07 3.39 8.14 -2.40 -0.02 3.37 16 14 C -0.13 -5.21 9.01 71.98 0.65 -4.56 16 15 C 0.05 2.47 4.44 29.85 0.13 2.61 16 16 C -0.53 -30.62 8.53 25.60 0.22 -30.40 16 17 H 0.06 3.32 7.60 -2.91 -0.02 3.30 16 18 C 0.01 0.54 5.46 84.65 0.46 1.00 16 19 N -0.93 -56.14 13.29 21.45 0.28 -55.86 16 20 Si 0.95 45.12 29.54 68.60 2.03 47.15 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 C -0.07 -1.83 5.74 -19.75 -0.11 -1.95 16 25 C -0.12 -3.13 8.64 71.23 0.62 -2.52 16 26 C -0.12 -2.43 9.35 22.25 0.21 -2.22 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 29 H 0.08 0.67 8.08 -2.38 -0.02 0.65 16 30 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 31 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 32 H 0.21 3.55 8.06 -2.91 -0.02 3.53 16 33 H 0.20 4.20 8.06 -2.91 -0.02 4.18 16 34 H 0.07 2.77 5.88 -2.39 -0.01 2.76 16 35 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 40 H 0.07 2.28 6.78 -2.38 -0.02 2.26 16 41 H 0.05 1.37 7.15 -2.39 -0.02 1.36 16 42 H 0.09 1.88 8.09 -2.39 -0.02 1.86 16 43 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -70.23 367.01 6.42 -63.81 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.99 Total: 16.36 kcal Atomic # 6 Polarization: -42.46 SS G_CDS: 6.61 Total: -35.85 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -2.16 Total: -89.72 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: -0.70 SS G_CDS: -1.05 Total: -1.75 kcal Total: -70.23 6.42 -63.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001458855403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.718 kcal (2) G-P(sol) polarization free energy of solvation -70.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds