Wall clock time and date at job start Tue Mar 31 2020 11:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30293 * 126.35155 * 2 1 4 4 N 1.28531 * 110.05433 * 180.02562 * 3 2 1 5 5 C 1.31218 * 109.86019 * 0.02562 * 4 3 2 6 6 N 1.38576 * 126.47343 * 179.97438 * 5 4 3 7 7 C 1.46904 * 111.00153 * 306.69190 * 6 5 4 8 8 C 1.46896 * 111.00422 * 70.64537 * 6 5 4 9 9 H 1.09005 * 109.47170 * 54.99868 * 8 6 5 10 10 C 1.53007 * 109.47036 * 295.00329 * 8 6 5 11 11 C 1.50698 * 109.47376 * 175.00207 * 8 6 5 12 12 H 1.07994 * 120.00167 * 359.97438 * 11 8 6 13 13 C 1.37881 * 119.99667 * 179.97438 * 11 8 6 14 14 N 1.31516 * 120.00366 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99669 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47062 * 60.00316 * 15 13 11 17 17 H 1.48499 * 109.47343 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47294 * 300.00000 * 15 13 11 19 19 N 1.36452 * 107.05642 * 359.97438 * 5 4 3 20 20 C 1.46495 * 127.14195 * 179.74410 * 19 5 4 21 21 C 1.53000 * 109.47490 * 92.29945 * 20 19 5 22 22 S 1.81404 * 109.47206 * 180.02562 * 21 20 19 23 23 C 1.81397 * 101.91991 * 180.02562 * 22 21 20 24 24 O 1.42096 * 108.57815 * 294.49524 * 22 21 20 25 25 O 1.42095 * 108.57380 * 65.51754 * 22 21 20 26 26 H 1.09000 * 109.47008 * 269.96110 * 1 2 3 27 27 H 1.09004 * 109.46346 * 29.95532 * 1 2 3 28 28 H 1.08994 * 109.47515 * 149.95670 * 1 2 3 29 29 H 1.09000 * 109.46946 * 55.00430 * 7 6 5 30 30 H 1.08993 * 109.47586 * 175.01021 * 7 6 5 31 31 H 1.09006 * 109.46748 * 295.00946 * 7 6 5 32 32 H 1.09005 * 109.46765 * 299.99787 * 10 8 6 33 33 H 1.09001 * 109.47141 * 59.99246 * 10 8 6 34 34 H 1.09003 * 109.47369 * 179.97438 * 10 8 6 35 35 H 0.97000 * 119.99954 * 180.02562 * 14 13 11 36 36 H 1.08998 * 109.47190 * 212.30660 * 20 19 5 37 37 H 1.09011 * 109.46606 * 332.30395 * 20 19 5 38 38 H 1.08998 * 109.47488 * 300.00533 * 21 20 19 39 39 H 1.09005 * 109.46423 * 60.00695 * 21 20 19 40 40 H 1.08993 * 109.47393 * 60.00071 * 23 22 21 41 41 H 1.08999 * 109.46793 * 180.02562 * 23 22 21 42 42 H 1.09006 * 109.46957 * 299.99999 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5130 0.6887 -0.0005 5 6 3.5945 -0.6210 -0.0015 6 7 4.7579 -1.3739 -0.0028 7 6 5.6444 -0.9712 -1.1028 8 6 5.4477 -1.2793 1.2907 9 1 4.7632 -1.5652 2.0893 10 6 5.9188 0.1594 1.5134 11 6 6.6378 -2.2037 1.2941 12 1 6.8594 -2.8021 0.4228 13 6 7.4439 -2.2856 2.4098 14 7 7.1744 -1.5566 3.4707 15 14 8.9187 -3.4321 2.4143 16 1 9.8511 -3.0434 1.3258 17 1 9.6169 -3.3354 3.7214 18 1 8.4610 -4.8283 2.1991 19 7 2.3174 -1.1015 -0.0009 20 6 1.9008 -2.5059 -0.0068 21 6 1.7035 -2.9855 1.4327 22 16 1.1883 -4.7248 1.4253 23 6 1.0166 -5.0722 3.1974 24 8 -0.0943 -4.8145 0.8204 25 8 2.2546 -5.5105 0.9107 26 1 -0.3633 -0.0007 1.0277 27 1 -0.3632 0.8905 -0.5132 28 1 -0.3634 -0.8895 -0.5145 29 1 5.8373 0.0997 -1.0406 30 1 6.5860 -1.5150 -1.0283 31 1 5.1674 -1.1997 -2.0560 32 1 6.6033 0.4453 0.7148 33 1 5.0579 0.8280 1.5109 34 1 6.4303 0.2297 2.4734 35 1 7.7417 -1.6140 4.2554 36 1 0.9635 -2.6046 -0.5544 37 1 2.6688 -3.1107 -0.4892 38 1 2.6407 -2.8868 1.9803 39 1 0.9354 -2.3807 1.9149 40 1 0.2684 -4.4064 3.6274 41 1 0.7049 -6.1074 3.3362 42 1 1.9738 -4.9117 3.6936 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460405705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:24 Heat of formation + Delta-G solvation = 31.352192 kcal Electronic energy + Delta-G solvation = -25853.860065 eV Core-core repulsion = 22192.089054 eV Total energy + Delta-G solvation = -3661.771012 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.60178 -37.29896 -37.16366 -36.25810 -35.67462 -33.00235 -31.65892 -30.87911 -29.77969 -28.80981 -27.16033 -25.39036 -25.16620 -24.43141 -21.56225 -20.58969 -19.52074 -19.09088 -17.40250 -16.56033 -16.38516 -16.35680 -15.99368 -15.75002 -15.30667 -14.77101 -14.67408 -13.80562 -13.76208 -13.57189 -13.40893 -13.27371 -13.20174 -12.78336 -12.50778 -12.31399 -12.26758 -12.16268 -11.79581 -11.63411 -11.42287 -11.29794 -11.22670 -10.94948 -10.88571 -10.82878 -10.62519 -10.24648 -10.17548 -9.97962 -9.84020 -8.97828 -8.53853 -8.47741 -7.76638 -6.12966 -4.19246 -0.28492 2.05660 2.46090 2.56584 3.24884 3.27313 3.31594 3.34799 3.39161 3.80551 4.25935 4.29045 4.35478 4.53910 4.55926 4.59590 4.68213 4.87696 4.98487 5.19193 5.23001 5.39606 5.43719 5.52553 5.65790 5.77677 5.93865 6.12489 6.34764 6.37363 6.58298 6.78891 6.94204 7.00009 7.09623 7.44925 7.57658 7.70546 7.84227 8.19054 8.39496 8.84331 9.16929 9.46060 10.93558 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.010434 B = 0.005895 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.804325 B = 4748.482325 C = 6682.452149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.155 3.845 3 N -0.292 5.292 4 N -0.311 5.311 5 C 0.378 3.622 6 N -0.472 5.472 7 C 0.044 3.956 8 C 0.226 3.774 9 H 0.034 0.966 10 C -0.174 4.174 11 C -0.509 4.509 12 H 0.067 0.933 13 C 0.063 3.937 14 N -0.890 5.890 15 Si 0.900 3.100 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.275 1.275 19 N -0.468 5.468 20 C 0.133 3.867 21 C -0.639 4.639 22 S 2.429 3.571 23 C -0.653 4.653 24 O -0.941 6.941 25 O -0.923 6.923 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.041 0.959 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.033 0.967 33 H 0.032 0.968 34 H 0.087 0.913 35 H 0.263 0.737 36 H 0.103 0.897 37 H 0.119 0.881 38 H 0.151 0.849 39 H 0.135 0.865 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.680 -4.564 -2.181 15.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 N -0.133 5.133 4 N -0.154 5.154 5 C 0.022 3.978 6 N -0.198 5.198 7 C -0.103 4.103 8 C 0.121 3.879 9 H 0.052 0.948 10 C -0.233 4.233 11 C -0.548 4.548 12 H 0.086 0.914 13 C -0.139 4.139 14 N -0.529 5.529 15 Si 0.728 3.272 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.200 1.200 19 N -0.163 5.163 20 C 0.008 3.992 21 C -0.767 4.767 22 S 2.609 3.391 23 C -0.803 4.803 24 O -0.938 6.938 25 O -0.921 6.921 26 H 0.099 0.901 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.111 0.889 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.138 0.862 38 H 0.169 0.831 39 H 0.154 0.846 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.433 -4.130 -2.781 15.267 hybrid contribution 0.841 -0.641 1.178 1.583 sum -13.591 -4.772 -1.603 14.494 Atomic orbital electron populations 1.20153 0.84192 1.04190 1.03608 1.24689 0.96384 0.82843 1.07294 1.73970 0.97095 1.24206 1.17992 1.74770 1.10990 1.08694 1.20930 1.22984 0.86182 0.88420 1.00193 1.59429 1.02291 1.49112 1.08994 1.22267 0.97106 1.00260 0.90702 1.19397 0.92817 0.94043 0.81630 0.94838 1.22446 1.00020 0.97389 1.03434 1.20992 1.09600 1.23428 1.00738 0.91441 1.24904 0.97858 0.95846 0.95309 1.69896 1.39034 1.39725 1.04214 0.86521 0.82297 0.81186 0.77230 1.20109 1.21326 1.20006 1.46253 1.06732 1.07091 1.56187 1.21278 1.03503 0.80843 0.93572 1.30868 1.14487 1.25522 1.05792 1.07635 0.75494 0.77409 0.78566 1.30227 1.12272 1.12162 1.25609 1.93594 1.40629 1.85592 1.74014 1.93662 1.56098 1.65607 1.76685 0.90068 0.88911 0.90620 0.94023 0.88940 0.93621 0.94822 0.94879 0.89488 0.92721 0.87906 0.86239 0.83076 0.84648 0.85323 0.85056 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.26 36.01 0.37 -0.24 16 2 C 0.15 2.44 8.07 -154.01 -1.24 1.19 16 3 N -0.29 -5.74 12.18 32.99 0.40 -5.34 16 4 N -0.31 -6.78 9.73 30.31 0.29 -6.48 16 5 C 0.38 7.68 6.21 -318.88 -1.98 5.70 16 6 N -0.47 -10.07 4.77 -176.08 -0.84 -10.91 16 7 C 0.04 0.87 8.66 60.07 0.52 1.39 16 8 C 0.23 5.52 2.32 -68.86 -0.16 5.36 16 9 H 0.03 0.89 8.11 -51.93 -0.42 0.47 16 10 C -0.17 -4.34 8.20 37.16 0.30 -4.03 16 11 C -0.51 -13.18 7.81 -34.44 -0.27 -13.45 16 12 H 0.07 1.72 6.81 -52.49 -0.36 1.36 16 13 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 14 N -0.89 -24.36 11.32 55.43 0.63 -23.73 16 15 Si 0.90 20.50 29.54 -169.99 -5.02 15.47 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 19 N -0.47 -7.66 2.81 -114.08 -0.32 -7.98 16 20 C 0.13 1.68 6.01 -4.04 -0.02 1.66 16 21 C -0.64 -6.63 6.13 37.16 0.23 -6.40 16 22 S 2.43 23.20 5.36 -107.50 -0.58 22.62 16 23 C -0.65 -4.25 10.62 101.05 1.07 -3.17 16 24 O -0.94 -10.85 18.10 -57.83 -1.05 -11.89 16 25 O -0.92 -13.08 18.10 -57.83 -1.05 -14.13 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.58 7.31 -51.93 -0.38 0.20 16 29 H 0.04 0.85 6.53 -51.93 -0.34 0.51 16 30 H 0.09 1.85 6.30 -51.93 -0.33 1.53 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.03 0.82 6.59 -51.93 -0.34 0.47 16 33 H 0.03 0.82 5.95 -51.93 -0.31 0.51 16 34 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 35 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.10 0.96 7.31 -51.93 -0.38 0.58 16 37 H 0.12 1.60 8.14 -51.92 -0.42 1.18 16 38 H 0.15 1.85 8.14 -51.92 -0.42 1.42 16 39 H 0.14 1.02 8.14 -51.92 -0.42 0.60 16 40 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.13 0.72 8.14 -51.92 -0.42 0.29 16 42 H 0.13 0.87 8.14 -51.92 -0.42 0.44 16 LS Contribution 355.37 15.07 5.36 5.36 Total: -1.00 -36.35 355.37 -9.56 -45.90 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.11 Total: 1.55 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -1.27 Total: -10.44 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.16 Total: -54.44 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -2.09 Total: -26.02 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 23.20 SS G_CDS: -0.58 Total: 22.62 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.35 -9.56 -45.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460405705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.256 kcal (2) G-P(sol) polarization free energy of solvation -36.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds