Wall clock time and date at job start Tue Mar 31 2020 11:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30293 * 126.35155 * 2 1 4 4 N 1.28531 * 110.05433 * 180.02562 * 3 2 1 5 5 C 1.31218 * 109.86019 * 0.02562 * 4 3 2 6 6 N 1.38576 * 126.47343 * 179.97438 * 5 4 3 7 7 C 1.46904 * 111.00153 * 306.69190 * 6 5 4 8 8 C 1.46896 * 111.00422 * 70.64537 * 6 5 4 9 9 H 1.09005 * 109.47170 * 54.99868 * 8 6 5 10 10 C 1.53007 * 109.47036 * 295.00329 * 8 6 5 11 11 C 1.50698 * 109.47376 * 175.00207 * 8 6 5 12 12 H 1.07994 * 120.00167 * 359.97438 * 11 8 6 13 13 C 1.37881 * 119.99667 * 179.97438 * 11 8 6 14 14 N 1.31516 * 120.00366 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99669 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47062 * 60.00316 * 15 13 11 17 17 H 1.48499 * 109.47343 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47294 * 300.00000 * 15 13 11 19 19 N 1.36452 * 107.05642 * 359.97438 * 5 4 3 20 20 C 1.46495 * 127.14195 * 179.74410 * 19 5 4 21 21 C 1.53000 * 109.47490 * 92.29945 * 20 19 5 22 22 S 1.81404 * 109.47206 * 180.02562 * 21 20 19 23 23 C 1.81397 * 101.91991 * 180.02562 * 22 21 20 24 24 O 1.42096 * 108.57815 * 294.49524 * 22 21 20 25 25 O 1.42095 * 108.57380 * 65.51754 * 22 21 20 26 26 H 1.09000 * 109.47008 * 269.96110 * 1 2 3 27 27 H 1.09004 * 109.46346 * 29.95532 * 1 2 3 28 28 H 1.08994 * 109.47515 * 149.95670 * 1 2 3 29 29 H 1.09000 * 109.46946 * 55.00430 * 7 6 5 30 30 H 1.08993 * 109.47586 * 175.01021 * 7 6 5 31 31 H 1.09006 * 109.46748 * 295.00946 * 7 6 5 32 32 H 1.09005 * 109.46765 * 299.99787 * 10 8 6 33 33 H 1.09001 * 109.47141 * 59.99246 * 10 8 6 34 34 H 1.09003 * 109.47369 * 179.97438 * 10 8 6 35 35 H 0.97000 * 119.99954 * 180.02562 * 14 13 11 36 36 H 1.08998 * 109.47190 * 212.30660 * 20 19 5 37 37 H 1.09011 * 109.46606 * 332.30395 * 20 19 5 38 38 H 1.08998 * 109.47488 * 300.00533 * 21 20 19 39 39 H 1.09005 * 109.46423 * 60.00695 * 21 20 19 40 40 H 1.08993 * 109.47393 * 60.00071 * 23 22 21 41 41 H 1.08999 * 109.46793 * 180.02562 * 23 22 21 42 42 H 1.09006 * 109.46957 * 299.99999 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5130 0.6887 -0.0005 5 6 3.5945 -0.6210 -0.0015 6 7 4.7579 -1.3739 -0.0028 7 6 5.6444 -0.9712 -1.1028 8 6 5.4477 -1.2793 1.2907 9 1 4.7632 -1.5652 2.0893 10 6 5.9188 0.1594 1.5134 11 6 6.6378 -2.2037 1.2941 12 1 6.8594 -2.8021 0.4228 13 6 7.4439 -2.2856 2.4098 14 7 7.1744 -1.5566 3.4707 15 14 8.9187 -3.4321 2.4143 16 1 9.8511 -3.0434 1.3258 17 1 9.6169 -3.3354 3.7214 18 1 8.4610 -4.8283 2.1991 19 7 2.3174 -1.1015 -0.0009 20 6 1.9008 -2.5059 -0.0068 21 6 1.7035 -2.9855 1.4327 22 16 1.1883 -4.7248 1.4253 23 6 1.0166 -5.0722 3.1974 24 8 -0.0943 -4.8145 0.8204 25 8 2.2546 -5.5105 0.9107 26 1 -0.3633 -0.0007 1.0277 27 1 -0.3632 0.8905 -0.5132 28 1 -0.3634 -0.8895 -0.5145 29 1 5.8373 0.0997 -1.0406 30 1 6.5860 -1.5150 -1.0283 31 1 5.1674 -1.1997 -2.0560 32 1 6.6033 0.4453 0.7148 33 1 5.0579 0.8280 1.5109 34 1 6.4303 0.2297 2.4734 35 1 7.7417 -1.6140 4.2554 36 1 0.9635 -2.6046 -0.5544 37 1 2.6688 -3.1107 -0.4892 38 1 2.6407 -2.8868 1.9803 39 1 0.9354 -2.3807 1.9149 40 1 0.2684 -4.4064 3.6274 41 1 0.7049 -6.1074 3.3362 42 1 1.9738 -4.9117 3.6936 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460405705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:23 Heat of formation + Delta-G solvation = 5.411414 kcal Electronic energy + Delta-G solvation = -25854.984942 eV Core-core repulsion = 22192.089054 eV Total energy + Delta-G solvation = -3662.895888 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.99163 -39.03022 -38.04413 -37.17560 -36.81564 -34.91044 -32.82923 -32.04100 -30.67133 -30.35273 -28.47241 -27.20970 -26.94110 -25.50323 -23.25461 -21.84245 -21.11410 -19.89076 -18.59313 -18.18531 -17.77164 -17.23448 -17.11550 -17.03174 -16.64604 -16.41653 -15.78427 -15.42782 -14.98177 -14.83549 -14.31278 -14.18372 -13.95506 -13.93335 -13.65228 -13.50766 -13.32306 -13.17097 -13.10274 -13.06694 -13.02443 -12.74881 -12.68814 -12.59203 -12.45051 -12.15139 -12.06685 -12.02977 -11.80375 -11.51684 -11.15022 -10.92700 -10.52594 -9.97626 -9.46579 -8.14980 -6.27742 -1.04162 0.72005 1.30468 1.46463 1.47083 1.54783 1.75102 1.80967 2.41671 2.60410 3.03347 3.06084 3.15549 3.37577 3.45690 3.50546 3.97224 3.98110 4.10172 4.15831 4.21017 4.30479 4.52378 4.61778 4.68810 4.71335 4.72481 4.92507 4.96669 4.97731 5.01221 5.05082 5.08511 5.09959 5.41519 5.61314 5.64703 5.82211 5.98778 6.19232 6.61203 6.81127 7.41101 7.74485 8.91326 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.010434 B = 0.005895 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.804325 B = 4748.482325 C = 6682.452149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.180 3.820 3 N -0.336 5.336 4 N -0.345 5.345 5 C 0.351 3.649 6 N -0.469 5.469 7 C 0.049 3.951 8 C 0.236 3.764 9 H 0.008 0.992 10 C -0.155 4.155 11 C -0.520 4.520 12 H 0.068 0.932 13 C 0.019 3.981 14 N -0.918 5.918 15 Si 0.961 3.039 16 H -0.270 1.270 17 H -0.285 1.285 18 H -0.269 1.269 19 N -0.463 5.463 20 C 0.116 3.884 21 C -0.639 4.639 22 S 2.447 3.553 23 C -0.637 4.637 24 O -0.959 6.959 25 O -0.977 6.977 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.028 0.972 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.030 0.970 33 H 0.028 0.972 34 H 0.062 0.938 35 H 0.263 0.737 36 H 0.142 0.858 37 H 0.104 0.896 38 H 0.128 0.872 39 H 0.168 0.832 40 H 0.160 0.840 41 H 0.148 0.852 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.815 -5.754 -1.930 17.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.088 4.088 3 N -0.176 5.176 4 N -0.187 5.187 5 C -0.006 4.006 6 N -0.195 5.195 7 C -0.099 4.099 8 C 0.130 3.870 9 H 0.025 0.975 10 C -0.215 4.215 11 C -0.559 4.559 12 H 0.086 0.914 13 C -0.181 4.181 14 N -0.557 5.557 15 Si 0.786 3.214 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.194 1.194 19 N -0.157 5.157 20 C -0.007 4.007 21 C -0.766 4.766 22 S 2.630 3.370 23 C -0.791 4.791 24 O -0.956 6.956 25 O -0.975 6.975 26 H 0.125 0.875 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.047 0.953 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.160 0.840 37 H 0.123 0.877 38 H 0.147 0.853 39 H 0.186 0.814 40 H 0.179 0.821 41 H 0.166 0.834 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.583 -5.319 -2.585 17.606 hybrid contribution 1.338 -0.249 1.128 1.768 sum -15.245 -5.568 -1.456 16.295 Atomic orbital electron populations 1.20551 0.79621 1.06346 1.05881 1.25833 0.98417 0.81535 1.03019 1.73892 0.96803 1.26047 1.20861 1.74617 1.12696 1.09756 1.21646 1.22866 0.86992 0.88402 1.02353 1.59294 1.02764 1.49647 1.07771 1.22244 0.97026 0.99226 0.91390 1.19067 0.92128 0.93057 0.82699 0.97458 1.22240 0.99368 0.98070 1.01794 1.21238 1.10147 1.23622 1.00856 0.91351 1.25658 1.00338 0.97144 0.94936 1.70021 1.40020 1.40934 1.04704 0.85557 0.79142 0.79405 0.77253 1.19560 1.21098 1.19416 1.46432 1.05384 1.08722 1.55171 1.21696 1.04812 0.78607 0.95610 1.30874 1.14484 1.26879 1.04315 1.06952 0.73917 0.76134 0.79958 1.30099 1.13697 1.14088 1.21187 1.93562 1.40706 1.85512 1.75814 1.93596 1.57883 1.66866 1.79125 0.87530 0.87675 0.87556 0.95334 0.89512 0.91271 0.95122 0.95282 0.91875 0.92739 0.83992 0.87724 0.85335 0.81359 0.82144 0.83359 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.26 71.24 0.73 -0.29 16 2 C 0.18 5.32 8.07 137.64 1.11 6.43 16 3 N -0.34 -13.14 12.18 -49.53 -0.60 -13.75 16 4 N -0.34 -15.32 9.73 -58.01 -0.56 -15.88 16 5 C 0.35 14.47 6.21 260.11 1.61 16.08 16 6 N -0.47 -20.52 4.77 -710.99 -3.39 -23.91 16 7 C 0.05 1.96 8.66 127.69 1.11 3.07 16 8 C 0.24 11.95 2.32 44.17 0.10 12.05 16 9 H 0.01 0.42 8.11 -2.38 -0.02 0.40 16 10 C -0.16 -8.08 8.20 71.98 0.59 -7.49 16 11 C -0.52 -27.47 7.81 25.60 0.20 -27.27 16 12 H 0.07 3.53 6.81 -2.91 -0.02 3.51 16 13 C 0.02 1.00 5.30 84.66 0.45 1.45 16 14 N -0.92 -51.22 11.32 21.45 0.24 -50.98 16 15 Si 0.96 42.14 29.54 68.60 2.03 44.17 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 17 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 N -0.46 -14.72 2.81 -514.85 -1.45 -16.16 16 20 C 0.12 2.76 6.01 86.38 0.52 3.28 16 21 C -0.64 -12.23 6.13 71.98 0.44 -11.79 16 22 S 2.45 42.68 5.36 -56.49 -0.30 42.38 16 23 C -0.64 -6.22 10.62 113.37 1.20 -5.02 16 24 O -0.96 -19.76 18.10 -127.37 -2.30 -22.06 16 25 O -0.98 -27.70 18.10 -127.37 -2.30 -30.00 16 26 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.11 1.06 7.31 -2.39 -0.02 1.04 16 29 H 0.03 1.20 6.53 -2.39 -0.02 1.19 16 30 H 0.09 3.55 6.30 -2.39 -0.02 3.53 16 31 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 32 H 0.03 1.54 6.59 -2.38 -0.02 1.53 16 33 H 0.03 1.49 5.95 -2.39 -0.01 1.48 16 34 H 0.06 3.56 6.07 -2.39 -0.01 3.55 16 35 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 36 H 0.14 2.19 7.31 -2.39 -0.02 2.17 16 37 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 38 H 0.13 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.17 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.16 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.15 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -81.78 355.37 0.44 -81.34 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 1.03 Total: 14.35 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 8.07 Total: -9.49 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -5.77 Total: -120.68 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: -4.61 Total: -52.06 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: 42.68 SS G_CDS: -0.30 Total: 42.38 kcal Total: -81.78 0.44 -81.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460405705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.754 kcal (2) G-P(sol) polarization free energy of solvation -81.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds