Wall clock time and date at job start Tue Mar 31 2020 11:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30293 * 126.35056 * 2 1 4 4 N 1.28526 * 110.05520 * 180.02562 * 3 2 1 5 5 C 1.31214 * 109.85838 * 359.74894 * 4 3 2 6 6 N 1.38583 * 126.47155 * 180.25069 * 5 4 3 7 7 C 1.46895 * 111.00541 * 258.82761 * 6 5 4 8 8 C 1.46899 * 110.99834 * 22.78218 * 6 5 4 9 9 H 1.08997 * 109.47667 * 299.99659 * 8 6 5 10 10 C 1.53001 * 109.47328 * 59.99924 * 8 6 5 11 11 C 1.50700 * 109.47040 * 179.97438 * 8 6 5 12 12 H 1.07996 * 120.00246 * 0.02562 * 11 8 6 13 13 C 1.37884 * 120.00161 * 179.97438 * 11 8 6 14 14 N 1.31516 * 119.99460 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 120.00098 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47205 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47014 * 119.99947 * 15 13 11 18 18 H 1.48497 * 109.47261 * 240.00044 * 15 13 11 19 19 N 1.36449 * 107.05787 * 0.40146 * 5 4 3 20 20 C 1.46496 * 127.14157 * 179.87386 * 19 5 4 21 21 C 1.53001 * 109.47368 * 263.51943 * 20 19 5 22 22 S 1.81395 * 109.47000 * 173.82492 * 21 20 19 23 23 C 1.81405 * 101.92088 * 180.02562 * 22 21 20 24 24 O 1.42096 * 108.58045 * 294.48804 * 22 21 20 25 25 O 1.42106 * 108.57891 * 65.51506 * 22 21 20 26 26 H 1.08998 * 109.47178 * 269.95507 * 1 2 3 27 27 H 1.09003 * 109.47036 * 29.95279 * 1 2 3 28 28 H 1.09003 * 109.47678 * 149.95624 * 1 2 3 29 29 H 1.09003 * 109.47195 * 53.28911 * 7 6 5 30 30 H 1.08997 * 109.47453 * 173.29555 * 7 6 5 31 31 H 1.09004 * 109.47000 * 293.29579 * 7 6 5 32 32 H 1.08999 * 109.47359 * 180.02562 * 10 8 6 33 33 H 1.09000 * 109.46762 * 299.99844 * 10 8 6 34 34 H 1.08997 * 109.47480 * 59.99396 * 10 8 6 35 35 H 0.97009 * 119.99458 * 180.02562 * 14 13 11 36 36 H 1.09003 * 109.47462 * 143.51785 * 20 19 5 37 37 H 1.09004 * 109.46597 * 23.52174 * 20 19 5 38 38 H 1.09003 * 109.46680 * 53.82674 * 21 20 19 39 39 H 1.09000 * 109.47041 * 293.82903 * 21 20 19 40 40 H 1.09000 * 109.46822 * 60.00097 * 23 22 21 41 41 H 1.08995 * 109.47161 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.47195 * 300.00696 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5129 0.6888 -0.0005 5 6 3.5944 -0.6208 0.0045 6 7 4.7579 -1.3737 0.0105 7 6 5.0593 -1.8878 -1.3322 8 6 5.8853 -0.5962 0.5418 9 1 6.0431 0.2858 -0.0788 10 6 5.5746 -0.1619 1.9756 11 6 7.1298 -1.4460 0.5334 12 1 7.0876 -2.4619 0.1694 13 6 8.3227 -0.9262 0.9896 14 7 8.3742 0.3111 1.4324 15 14 9.8654 -1.9794 0.9785 16 1 9.5434 -3.3234 0.4354 17 1 10.8977 -1.3361 0.1265 18 1 10.3818 -2.1156 2.3641 19 7 2.3174 -1.1014 -0.0007 20 6 1.9008 -2.5059 -0.0006 21 6 1.6063 -2.9507 -1.4346 22 16 1.2682 -4.7327 -1.4576 23 6 0.9537 -5.0318 -3.2189 24 8 2.4533 -5.4232 -1.0862 25 8 0.0686 -4.9753 -0.7354 26 1 -0.3633 -0.0008 1.0276 27 1 -0.3633 0.8904 -0.5131 28 1 -0.3634 -0.8896 -0.5145 29 1 5.0694 -1.0621 -2.0436 30 1 6.0353 -2.3731 -1.3248 31 1 4.2968 -2.6098 -1.6244 32 1 6.4110 0.4154 2.3697 33 1 4.6744 0.4526 1.9821 34 1 5.4168 -1.0438 2.5964 35 1 9.2135 0.6769 1.7530 36 1 1.0025 -2.6185 0.6064 37 1 2.6990 -3.1215 0.4141 38 1 2.4688 -2.7363 -2.0658 39 1 0.7374 -2.4110 -1.8112 40 1 1.8356 -4.7563 -3.7973 41 1 0.7330 -6.0878 -3.3744 42 1 0.1042 -4.4310 -3.5435 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460405714.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:26 Heat of formation + Delta-G solvation = 33.582249 kcal Electronic energy + Delta-G solvation = -25645.237984 eV Core-core repulsion = 21983.563675 eV Total energy + Delta-G solvation = -3661.674309 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.59367 -37.36385 -37.15238 -36.44095 -35.79645 -32.98301 -31.63079 -30.99736 -29.99448 -29.28031 -27.45040 -25.32144 -24.62863 -24.33411 -21.91487 -20.43901 -19.52783 -19.28033 -17.58369 -16.71656 -16.59345 -16.41845 -15.97889 -15.82367 -15.33996 -14.97906 -14.58892 -13.90716 -13.82953 -13.78440 -13.64447 -13.43465 -13.16244 -12.81210 -12.71613 -12.45358 -12.37242 -12.35371 -11.99560 -11.93399 -11.55718 -11.32607 -11.11462 -10.96297 -10.91814 -10.66590 -10.33475 -10.23528 -10.08822 -10.01211 -9.84663 -9.21707 -8.64082 -8.46924 -7.54012 -6.05516 -4.12956 -0.50674 2.07660 2.26300 2.51879 3.21588 3.28153 3.31150 3.36230 3.39692 3.56506 4.05249 4.13107 4.30438 4.34605 4.48547 4.53809 4.57362 4.75009 4.83497 5.07401 5.19275 5.24576 5.28190 5.39569 5.60138 5.69298 5.85363 6.02687 6.08930 6.29653 6.48784 6.83842 6.93878 7.09155 7.16753 7.41431 7.65154 7.72933 7.94277 8.22525 8.42228 8.89398 9.25479 9.51841 11.00947 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.013718 B = 0.004533 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.568737 B = 6174.858334 C = 7763.209504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.148 3.852 3 N -0.285 5.285 4 N -0.312 5.312 5 C 0.385 3.615 6 N -0.463 5.463 7 C 0.037 3.963 8 C 0.228 3.772 9 H 0.026 0.974 10 C -0.134 4.134 11 C -0.517 4.517 12 H 0.067 0.933 13 C 0.064 3.936 14 N -0.884 5.884 15 Si 0.900 3.100 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.283 1.283 19 N -0.478 5.478 20 C 0.130 3.870 21 C -0.644 4.644 22 S 2.428 3.572 23 C -0.653 4.653 24 O -0.922 6.922 25 O -0.935 6.935 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.028 0.972 30 H 0.103 0.897 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.018 0.982 34 H 0.027 0.973 35 H 0.262 0.738 36 H 0.107 0.893 37 H 0.119 0.881 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.937 -9.040 -9.262 22.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.119 4.119 3 N -0.125 5.125 4 N -0.155 5.155 5 C 0.029 3.971 6 N -0.189 5.189 7 C -0.111 4.111 8 C 0.124 3.876 9 H 0.044 0.956 10 C -0.192 4.192 11 C -0.555 4.555 12 H 0.085 0.915 13 C -0.139 4.139 14 N -0.522 5.522 15 Si 0.728 3.272 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.209 1.209 19 N -0.175 5.175 20 C 0.004 3.996 21 C -0.772 4.772 22 S 2.607 3.393 23 C -0.803 4.803 24 O -0.920 6.920 25 O -0.932 6.932 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.089 0.911 29 H 0.047 0.953 30 H 0.122 0.878 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.037 0.963 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.125 0.875 37 H 0.137 0.863 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.409 -8.433 -8.177 21.002 hybrid contribution 0.615 -0.710 -1.136 1.474 sum -16.794 -9.143 -9.314 21.270 Atomic orbital electron populations 1.20115 0.84317 1.03746 1.03699 1.24622 0.96257 0.82779 1.08251 1.73978 0.97049 1.24127 1.17392 1.74829 1.10648 1.07774 1.22265 1.23127 0.85249 0.89132 0.99561 1.59150 1.01277 1.36077 1.22408 1.22423 1.03199 0.98533 0.86901 1.19371 0.83731 0.91713 0.92785 0.95597 1.21824 1.00357 0.99189 0.97835 1.21109 0.91889 0.99217 1.43324 0.91470 1.24908 0.98945 0.95072 0.94954 1.69935 1.26397 1.13926 1.41901 0.86411 0.82697 0.80361 0.77760 1.19633 1.21035 1.20937 1.46158 1.06533 1.06847 1.57997 1.21295 1.03921 0.81373 0.92998 1.30994 1.12945 1.27006 1.06236 1.07752 0.75735 0.77330 0.78474 1.30249 1.12211 1.12335 1.25521 1.93671 1.47978 1.69495 1.80808 1.93617 1.47264 1.83266 1.69016 0.89969 0.89023 0.91087 0.95342 0.87816 0.93720 0.89118 0.96290 0.95377 0.92777 0.87503 0.86315 0.83981 0.84292 0.85014 0.84928 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.57 10.21 36.00 0.37 -0.20 16 2 C 0.15 2.31 8.07 -154.02 -1.24 1.07 16 3 N -0.29 -5.75 12.18 32.99 0.40 -5.35 16 4 N -0.31 -7.14 10.15 30.31 0.31 -6.83 16 5 C 0.38 7.91 5.96 -318.88 -1.90 6.01 16 6 N -0.46 -10.04 4.61 -176.09 -0.81 -10.85 16 7 C 0.04 0.68 9.39 60.06 0.56 1.24 16 8 C 0.23 5.87 1.74 -68.86 -0.12 5.75 16 9 H 0.03 0.76 7.90 -51.93 -0.41 0.35 16 10 C -0.13 -3.50 8.80 37.16 0.33 -3.17 16 11 C -0.52 -13.80 7.79 -34.44 -0.27 -14.07 16 12 H 0.07 1.74 6.46 -52.49 -0.34 1.40 16 13 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 14 N -0.88 -25.20 11.32 55.43 0.63 -24.58 16 15 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 N -0.48 -7.61 2.81 -114.09 -0.32 -7.93 16 20 C 0.13 1.50 5.84 -4.04 -0.02 1.47 16 21 C -0.64 -4.83 6.06 37.16 0.23 -4.61 16 22 S 2.43 17.57 5.36 -107.50 -0.58 16.99 16 23 C -0.65 -2.31 10.62 101.05 1.07 -1.24 16 24 O -0.92 -10.89 18.10 -57.83 -1.05 -11.94 16 25 O -0.93 -9.41 18.10 -57.83 -1.05 -10.46 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.47 7.53 -51.93 -0.39 0.08 16 29 H 0.03 0.52 8.10 -51.93 -0.42 0.10 16 30 H 0.10 1.99 5.92 -51.93 -0.31 1.69 16 31 H 0.04 0.64 6.14 -51.93 -0.32 0.32 16 32 H 0.09 2.56 6.07 -51.93 -0.32 2.24 16 33 H 0.02 0.47 6.32 -51.93 -0.33 0.15 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.11 0.94 8.09 -51.93 -0.42 0.52 16 37 H 0.12 1.51 8.08 -51.93 -0.42 1.09 16 38 H 0.14 1.06 6.24 -51.92 -0.32 0.74 16 39 H 0.14 0.62 7.70 -51.92 -0.40 0.22 16 40 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 41 H 0.13 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.13 0.20 8.14 -51.93 -0.42 -0.23 16 LS Contribution 354.95 15.07 5.35 5.35 Total: -1.00 -38.43 354.95 -9.29 -47.73 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -6.06 Total: -1.91 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -1.09 Total: -6.10 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.21 Total: -55.54 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -2.09 Total: -22.40 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 17.57 SS G_CDS: -0.58 Total: 16.99 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.43 -9.29 -47.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460405714.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.308 kcal (2) G-P(sol) polarization free energy of solvation -38.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds