Wall clock time and date at job start Tue Mar 31 2020 11:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30293 * 126.35056 * 2 1 4 4 N 1.28526 * 110.05520 * 180.02562 * 3 2 1 5 5 C 1.31214 * 109.85838 * 359.74894 * 4 3 2 6 6 N 1.38583 * 126.47155 * 180.25069 * 5 4 3 7 7 C 1.46895 * 111.00541 * 258.82761 * 6 5 4 8 8 C 1.46899 * 110.99834 * 22.78218 * 6 5 4 9 9 H 1.08997 * 109.47667 * 299.99659 * 8 6 5 10 10 C 1.53001 * 109.47328 * 59.99924 * 8 6 5 11 11 C 1.50700 * 109.47040 * 179.97438 * 8 6 5 12 12 H 1.07996 * 120.00246 * 0.02562 * 11 8 6 13 13 C 1.37884 * 120.00161 * 179.97438 * 11 8 6 14 14 N 1.31516 * 119.99460 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 120.00098 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47205 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47014 * 119.99947 * 15 13 11 18 18 H 1.48497 * 109.47261 * 240.00044 * 15 13 11 19 19 N 1.36449 * 107.05787 * 0.40146 * 5 4 3 20 20 C 1.46496 * 127.14157 * 179.87386 * 19 5 4 21 21 C 1.53001 * 109.47368 * 263.51943 * 20 19 5 22 22 S 1.81395 * 109.47000 * 173.82492 * 21 20 19 23 23 C 1.81405 * 101.92088 * 180.02562 * 22 21 20 24 24 O 1.42096 * 108.58045 * 294.48804 * 22 21 20 25 25 O 1.42106 * 108.57891 * 65.51506 * 22 21 20 26 26 H 1.08998 * 109.47178 * 269.95507 * 1 2 3 27 27 H 1.09003 * 109.47036 * 29.95279 * 1 2 3 28 28 H 1.09003 * 109.47678 * 149.95624 * 1 2 3 29 29 H 1.09003 * 109.47195 * 53.28911 * 7 6 5 30 30 H 1.08997 * 109.47453 * 173.29555 * 7 6 5 31 31 H 1.09004 * 109.47000 * 293.29579 * 7 6 5 32 32 H 1.08999 * 109.47359 * 180.02562 * 10 8 6 33 33 H 1.09000 * 109.46762 * 299.99844 * 10 8 6 34 34 H 1.08997 * 109.47480 * 59.99396 * 10 8 6 35 35 H 0.97009 * 119.99458 * 180.02562 * 14 13 11 36 36 H 1.09003 * 109.47462 * 143.51785 * 20 19 5 37 37 H 1.09004 * 109.46597 * 23.52174 * 20 19 5 38 38 H 1.09003 * 109.46680 * 53.82674 * 21 20 19 39 39 H 1.09000 * 109.47041 * 293.82903 * 21 20 19 40 40 H 1.09000 * 109.46822 * 60.00097 * 23 22 21 41 41 H 1.08995 * 109.47161 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.47195 * 300.00696 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5129 0.6888 -0.0005 5 6 3.5944 -0.6208 0.0045 6 7 4.7579 -1.3737 0.0105 7 6 5.0593 -1.8878 -1.3322 8 6 5.8853 -0.5962 0.5418 9 1 6.0431 0.2858 -0.0788 10 6 5.5746 -0.1619 1.9756 11 6 7.1298 -1.4460 0.5334 12 1 7.0876 -2.4619 0.1694 13 6 8.3227 -0.9262 0.9896 14 7 8.3742 0.3111 1.4324 15 14 9.8654 -1.9794 0.9785 16 1 9.5434 -3.3234 0.4354 17 1 10.8977 -1.3361 0.1265 18 1 10.3818 -2.1156 2.3641 19 7 2.3174 -1.1014 -0.0007 20 6 1.9008 -2.5059 -0.0006 21 6 1.6063 -2.9507 -1.4346 22 16 1.2682 -4.7327 -1.4576 23 6 0.9537 -5.0318 -3.2189 24 8 2.4533 -5.4232 -1.0862 25 8 0.0686 -4.9753 -0.7354 26 1 -0.3633 -0.0008 1.0276 27 1 -0.3633 0.8904 -0.5131 28 1 -0.3634 -0.8896 -0.5145 29 1 5.0694 -1.0621 -2.0436 30 1 6.0353 -2.3731 -1.3248 31 1 4.2968 -2.6098 -1.6244 32 1 6.4110 0.4154 2.3697 33 1 4.6744 0.4526 1.9821 34 1 5.4168 -1.0438 2.5964 35 1 9.2135 0.6769 1.7530 36 1 1.0025 -2.6185 0.6064 37 1 2.6990 -3.1215 0.4141 38 1 2.4688 -2.7363 -2.0658 39 1 0.7374 -2.4110 -1.8112 40 1 1.8356 -4.7563 -3.7973 41 1 0.7330 -6.0878 -3.3744 42 1 0.1042 -4.4310 -3.5435 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460405714.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:26 Heat of formation + Delta-G solvation = 4.633423 kcal Electronic energy + Delta-G solvation = -25646.493299 eV Core-core repulsion = 21983.563675 eV Total energy + Delta-G solvation = -3662.929624 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.98433 -38.88725 -38.03419 -37.16862 -36.85493 -34.94080 -32.75915 -32.04762 -31.22613 -30.33638 -28.78746 -27.18746 -26.07378 -25.51737 -23.63030 -21.66963 -21.18109 -19.86847 -18.72218 -18.14762 -17.68706 -17.27413 -17.20799 -16.89327 -16.75095 -16.33549 -15.80281 -15.58822 -15.06206 -14.73713 -14.33260 -14.28017 -13.92878 -13.90699 -13.88543 -13.53437 -13.39581 -13.14574 -13.05688 -13.03738 -12.81372 -12.79175 -12.71641 -12.57771 -12.24802 -12.11352 -12.05984 -12.03949 -11.74504 -11.46915 -11.11051 -11.08865 -10.59514 -10.28422 -9.20500 -8.14151 -6.29158 -1.04121 0.77290 1.28355 1.44381 1.46045 1.58318 1.78051 1.86228 2.40997 2.63167 2.98419 3.05738 3.17253 3.34667 3.43767 3.53612 3.89340 4.05012 4.09099 4.13661 4.20792 4.32606 4.40676 4.51466 4.70851 4.72651 4.77800 4.78918 4.90676 4.95635 5.01144 5.03028 5.07888 5.13794 5.40620 5.56934 5.63843 5.89410 5.97574 6.14087 6.57638 6.81269 7.39784 7.82233 8.93069 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.013718 B = 0.004533 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.568737 B = 6174.858334 C = 7763.209504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.177 3.823 3 N -0.336 5.336 4 N -0.363 5.363 5 C 0.363 3.637 6 N -0.465 5.465 7 C 0.036 3.964 8 C 0.240 3.760 9 H -0.019 1.019 10 C -0.117 4.117 11 C -0.527 4.527 12 H 0.074 0.926 13 C 0.013 3.987 14 N -0.919 5.919 15 Si 0.970 3.030 16 H -0.260 1.260 17 H -0.281 1.281 18 H -0.282 1.282 19 N -0.469 5.469 20 C 0.110 3.890 21 C -0.640 4.640 22 S 2.437 3.563 23 C -0.631 4.631 24 O -0.978 6.978 25 O -0.967 6.967 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.020 0.980 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.014 0.986 34 H 0.027 0.973 35 H 0.263 0.737 36 H 0.137 0.863 37 H 0.100 0.900 38 H 0.143 0.857 39 H 0.178 0.822 40 H 0.149 0.851 41 H 0.143 0.857 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.390 -11.159 -11.119 25.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.091 4.091 3 N -0.175 5.175 4 N -0.206 5.206 5 C 0.005 3.995 6 N -0.190 5.190 7 C -0.111 4.111 8 C 0.134 3.866 9 H -0.001 1.001 10 C -0.175 4.175 11 C -0.565 4.565 12 H 0.092 0.908 13 C -0.186 4.186 14 N -0.558 5.558 15 Si 0.794 3.206 16 H -0.183 1.183 17 H -0.206 1.206 18 H -0.208 1.208 19 N -0.165 5.165 20 C -0.014 4.014 21 C -0.767 4.767 22 S 2.621 3.379 23 C -0.785 4.785 24 O -0.975 6.975 25 O -0.964 6.964 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.130 0.870 29 H 0.038 0.962 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.033 0.967 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.155 0.845 37 H 0.119 0.881 38 H 0.161 0.839 39 H 0.196 0.804 40 H 0.168 0.832 41 H 0.162 0.838 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -19.891 -10.574 -10.007 24.650 hybrid contribution 1.176 -0.045 -0.636 1.337 sum -18.716 -10.619 -10.643 24.006 Atomic orbital electron populations 1.20524 0.79547 1.06418 1.05645 1.25800 0.98330 0.81466 1.03534 1.73880 0.96662 1.26304 1.20662 1.74681 1.12703 1.09536 1.23640 1.22936 0.86328 0.88921 1.01310 1.59050 1.00628 1.35276 1.24023 1.22507 1.04178 0.98932 0.85467 1.18950 0.85469 0.90555 0.91615 1.00111 1.21600 0.98986 0.98525 0.98388 1.21397 0.92482 0.99519 1.43086 0.90756 1.25795 1.02207 0.96174 0.94464 1.70087 1.27193 1.15720 1.42788 0.85328 0.78528 0.79036 0.77665 1.18346 1.20641 1.20829 1.46319 1.04693 1.08691 1.56797 1.21737 1.04584 0.78573 0.96470 1.30981 1.14721 1.27542 1.03470 1.07233 0.73948 0.76431 0.80281 1.30067 1.14432 1.13818 1.20173 1.93607 1.50069 1.70734 1.83123 1.93573 1.47718 1.83515 1.71577 0.88215 0.87728 0.87040 0.96153 0.88902 0.89439 0.91614 0.96697 0.95409 0.92764 0.84463 0.88116 0.83869 0.80421 0.83233 0.83829 0.82105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.21 71.23 0.73 -0.20 16 2 C 0.18 5.20 8.07 137.64 1.11 6.31 16 3 N -0.34 -13.67 12.18 -49.54 -0.60 -14.27 16 4 N -0.36 -17.25 10.15 -58.01 -0.59 -17.83 16 5 C 0.36 15.18 5.96 260.11 1.55 16.73 16 6 N -0.46 -20.67 4.61 -711.02 -3.28 -23.94 16 7 C 0.04 1.33 9.39 127.69 1.20 2.53 16 8 C 0.24 12.95 1.74 44.17 0.08 13.03 16 9 H -0.02 -1.17 7.90 -2.39 -0.02 -1.19 16 10 C -0.12 -6.42 8.80 71.98 0.63 -5.79 16 11 C -0.53 -28.87 7.79 25.60 0.20 -28.67 16 12 H 0.07 3.89 6.46 -2.91 -0.02 3.87 16 13 C 0.01 0.72 5.30 84.66 0.45 1.17 16 14 N -0.92 -54.39 11.32 21.45 0.24 -54.15 16 15 Si 0.97 43.39 29.54 68.60 2.03 45.42 16 16 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 19 N -0.47 -14.29 2.81 -514.86 -1.45 -15.74 16 20 C 0.11 2.28 5.84 86.38 0.50 2.78 16 21 C -0.64 -7.30 6.06 71.98 0.44 -6.86 16 22 S 2.44 28.57 5.36 -56.49 -0.30 28.27 16 23 C -0.63 -1.38 10.62 113.37 1.20 -0.18 16 24 O -0.98 -22.13 18.10 -127.37 -2.30 -24.43 16 25 O -0.97 -17.02 18.10 -127.37 -2.31 -19.32 16 26 H 0.10 1.25 8.14 -2.39 -0.02 1.24 16 27 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.11 0.79 7.53 -2.39 -0.02 0.77 16 29 H 0.02 0.76 8.10 -2.39 -0.02 0.74 16 30 H 0.09 3.61 5.92 -2.39 -0.01 3.60 16 31 H 0.09 2.42 6.14 -2.39 -0.01 2.40 16 32 H 0.07 3.92 6.07 -2.39 -0.01 3.90 16 33 H 0.01 0.78 6.32 -2.39 -0.02 0.77 16 34 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 36 H 0.14 1.97 8.09 -2.39 -0.02 1.95 16 37 H 0.10 2.50 8.08 -2.39 -0.02 2.48 16 38 H 0.14 1.66 6.24 -2.39 -0.01 1.64 16 39 H 0.18 0.57 7.70 -2.39 -0.02 0.55 16 40 H 0.15 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.16 -0.54 8.14 -2.39 -0.02 -0.56 16 Total: -1.00 -90.42 354.95 0.56 -89.86 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 1.03 Total: 5.27 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 8.09 Total: 0.86 kcal Atomic # 7 Polarization: -120.26 SS G_CDS: -5.67 Total: -125.93 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -4.61 Total: -43.76 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 28.57 SS G_CDS: -0.30 Total: 28.27 kcal Total: -90.42 0.56 -89.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460405714.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.497 kcal (2) G-P(sol) polarization free energy of solvation -90.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds