Wall clock time and date at job start Tue Mar 31 2020 11:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38209 * 120.40917 * 2 1 4 4 C 1.39504 * 118.33936 * 179.97438 * 3 2 1 5 5 N 1.38994 * 120.52333 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99920 * 185.06348 * 5 4 3 7 7 O 1.21574 * 120.00464 * 354.92426 * 6 5 4 8 8 N 1.34784 * 119.99970 * 174.91595 * 6 5 4 9 9 C 1.40186 * 120.00068 * 180.02562 * 8 6 5 10 10 C 1.40405 * 125.97120 * 0.02562 * 9 8 6 11 11 C 1.35244 * 107.86636 * 179.70544 * 10 9 8 12 12 N 1.34970 * 107.85726 * 0.26318 * 11 10 9 13 13 C 1.46496 * 125.97151 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47083 * 125.00436 * 13 12 11 15 15 H 1.08001 * 119.99918 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00024 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00229 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00139 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47436 * 89.99713 * 18 16 14 20 20 H 1.48505 * 109.47115 * 209.99828 * 18 16 14 21 21 H 1.48501 * 109.47121 * 329.99573 * 18 16 14 22 22 N 1.31212 * 125.97529 * 180.18281 * 9 8 6 23 23 N 1.32929 * 118.95441 * 0.27626 * 4 3 2 24 24 C 1.31747 * 120.70009 * 359.44094 * 23 4 3 25 25 C 1.50700 * 119.08823 * 180.26419 * 24 23 4 26 26 N 1.31797 * 121.82727 * 0.57750 * 24 23 4 27 27 H 1.09001 * 109.47637 * 89.99452 * 1 2 3 28 28 H 1.08994 * 109.47058 * 209.99911 * 1 2 3 29 29 H 1.09001 * 109.46815 * 329.99911 * 1 2 3 30 30 H 1.07997 * 120.82625 * 359.95992 * 3 2 1 31 31 H 0.97003 * 120.00346 * 5.06439 * 5 4 3 32 32 H 0.96998 * 119.99895 * 0.02562 * 8 6 5 33 33 H 1.08001 * 126.06451 * 359.97290 * 10 9 8 34 34 H 1.08000 * 126.06904 * 180.28412 * 11 10 9 35 35 H 1.09007 * 109.47115 * 245.00000 * 13 12 11 36 36 H 1.09002 * 109.47834 * 5.00110 * 13 12 11 37 37 H 0.96994 * 120.00501 * 180.02562 * 17 16 14 38 38 H 1.08996 * 109.47596 * 270.30489 * 25 24 23 39 39 H 1.09007 * 109.46911 * 30.30623 * 25 24 23 40 40 H 1.08998 * 109.47221 * 150.29512 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2065 1.1920 0.0000 4 6 3.6006 1.1416 0.0005 5 7 4.3494 2.3126 0.0011 6 6 5.6920 2.2541 -0.1014 7 8 6.2553 1.1768 -0.1014 8 7 6.4101 3.3900 -0.2041 9 6 7.8066 3.3292 -0.3112 10 6 8.5824 2.1590 -0.3249 11 6 9.8793 2.5225 -0.4480 12 7 9.9279 3.8701 -0.5043 13 6 11.1395 4.6827 -0.6382 14 6 11.0040 5.5938 -1.8308 15 1 10.1055 5.5697 -2.4295 16 6 12.0272 6.4582 -2.1577 17 7 11.9093 7.2531 -3.1989 18 14 13.5817 6.4994 -1.1227 19 1 14.5637 5.5265 -1.6654 20 1 14.1651 7.8645 -1.1599 21 1 13.2521 6.1400 0.2799 22 7 8.6173 4.3558 -0.4133 23 7 4.2017 -0.0440 -0.0046 24 6 3.4956 -1.1562 0.0010 25 6 4.2146 -2.4806 0.0010 26 7 2.1777 -1.1428 0.0004 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6868 2.1387 -0.0006 31 1 3.9056 3.1720 0.0753 32 1 5.9608 4.2496 -0.2039 33 1 8.2094 1.1479 -0.2545 34 1 10.7257 1.8532 -0.4935 35 1 11.2770 5.2811 0.2625 36 1 12.0015 4.0299 -0.7757 37 1 12.6292 7.8609 -3.4291 38 1 4.3884 -2.7998 -1.0266 39 1 5.1699 -2.3754 0.5153 40 1 3.6057 -3.2247 0.5145 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467152666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:04 Heat of formation + Delta-G solvation = 124.500174 kcal Electronic energy + Delta-G solvation = -24786.388394 eV Core-core repulsion = 21025.505382 eV Total energy + Delta-G solvation = -3760.883012 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.60758 -40.74175 -39.65451 -36.00044 -34.82239 -34.54674 -33.35072 -32.14394 -31.07369 -29.43249 -29.39926 -28.37124 -27.14703 -24.17638 -22.74088 -22.48700 -21.60150 -20.56504 -19.99518 -18.60756 -17.83139 -17.03738 -16.91585 -16.37375 -16.10315 -15.71909 -15.27538 -15.19212 -14.55987 -14.42380 -14.38802 -13.74324 -13.65462 -13.19621 -13.08735 -12.84181 -12.77714 -12.55802 -12.42786 -12.35073 -12.17694 -11.53539 -11.15525 -10.99839 -10.79834 -10.66497 -10.28105 -10.02942 -9.98160 -9.91444 -9.55138 -9.13878 -9.03550 -8.77846 -8.22275 -7.54106 -6.24754 -4.27127 0.69811 0.93362 1.92596 2.52686 2.95997 3.13363 3.18266 3.21738 3.27507 3.55054 3.72942 3.76240 3.83011 4.09982 4.21846 4.42349 4.72716 4.83366 5.02903 5.10009 5.15138 5.22293 5.34939 5.42756 5.45714 5.54545 5.65375 5.71591 5.88370 6.05068 6.21473 6.35676 6.41274 6.47098 6.62900 6.68345 6.99130 7.25298 7.33418 7.66366 7.79817 8.05626 8.31999 8.38729 8.53066 8.84812 9.30137 10.87920 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.033958 B = 0.002284 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.361622 B =12255.687978 C =12794.144521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.198 3.802 3 C -0.276 4.276 4 C 0.433 3.567 5 N -0.660 5.660 6 C 0.702 3.298 7 O -0.498 6.498 8 N -0.638 5.638 9 C 0.276 3.724 10 C -0.281 4.281 11 C 0.052 3.948 12 N -0.319 5.319 13 C 0.232 3.768 14 C -0.534 4.534 15 H 0.085 0.915 16 C 0.076 3.924 17 N -0.888 5.888 18 Si 0.873 3.127 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.264 1.264 22 N -0.297 5.297 23 N -0.511 5.511 24 C 0.353 3.647 25 C -0.084 4.084 26 N -0.548 5.548 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.147 0.853 31 H 0.418 0.582 32 H 0.409 0.591 33 H 0.164 0.836 34 H 0.170 0.830 35 H 0.042 0.958 36 H 0.050 0.950 37 H 0.268 0.732 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.649 -13.760 8.277 26.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.054 3.946 3 C -0.302 4.302 4 C 0.192 3.808 5 N -0.309 5.309 6 C 0.400 3.600 7 O -0.365 6.365 8 N -0.289 5.289 9 C 0.022 3.978 10 C -0.312 4.312 11 C -0.097 4.097 12 N -0.101 5.101 13 C 0.113 3.887 14 C -0.572 4.572 15 H 0.103 0.897 16 C -0.128 4.128 17 N -0.525 5.525 18 Si 0.699 3.301 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.189 1.189 22 N -0.128 5.128 23 N -0.232 5.232 24 C 0.085 3.915 25 C -0.142 4.142 26 N -0.267 5.267 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.164 0.836 31 H 0.255 0.745 32 H 0.244 0.756 33 H 0.181 0.819 34 H 0.187 0.813 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.237 -14.040 8.078 25.148 hybrid contribution 0.005 1.328 0.362 1.377 sum -19.232 -12.712 8.440 24.550 Atomic orbital electron populations 1.20758 0.87702 1.03998 1.03686 1.21425 0.97354 0.87364 0.88482 1.21971 0.92818 1.01375 1.14086 1.18265 0.87324 0.86225 0.88979 1.42586 1.05941 1.07712 1.74687 1.15659 0.80683 0.84465 0.79207 1.91004 1.67673 1.26559 1.51298 1.41326 1.03598 1.08287 1.75687 1.18719 0.82514 0.93449 1.03098 1.21549 0.90851 0.99641 1.19197 1.22561 0.98899 0.85906 1.02335 1.48605 1.04948 1.04233 1.52277 1.20053 0.78104 0.91200 0.99343 1.21103 1.05419 1.20122 1.10603 0.89658 1.24839 0.98226 0.94751 0.94991 1.69871 1.33376 1.23114 1.26133 0.86901 0.83648 0.78326 0.81196 1.19691 1.20543 1.18859 1.77384 0.88158 1.19634 1.27592 1.68310 1.40008 0.96785 1.18132 1.23222 0.86069 0.94237 0.88021 1.20571 1.00200 0.89416 1.04021 1.68131 1.09681 1.30044 1.18862 0.89659 0.89863 0.90170 0.83569 0.74506 0.75649 0.81874 0.81305 0.94021 0.93267 0.92174 0.89505 0.89217 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.54 10.21 36.00 0.37 -0.17 16 2 C 0.20 1.82 6.82 -82.32 -0.56 1.26 16 3 C -0.28 -2.40 9.72 -39.12 -0.38 -2.78 16 4 C 0.43 5.13 7.45 -154.44 -1.15 3.98 16 5 N -0.66 -6.97 5.39 -15.67 -0.08 -7.05 16 6 C 0.70 10.34 8.49 -86.91 -0.74 9.60 16 7 O -0.50 -9.06 11.78 5.30 0.06 -9.00 16 8 N -0.64 -9.56 5.46 -15.51 -0.08 -9.64 16 9 C 0.28 5.42 8.11 -154.37 -1.25 4.17 16 10 C -0.28 -5.44 9.61 -39.83 -0.38 -5.83 16 11 C 0.05 1.00 11.44 -17.24 -0.20 0.80 16 12 N -0.32 -7.15 3.67 -62.56 -0.23 -7.38 16 13 C 0.23 5.45 5.33 -5.20 -0.03 5.42 16 14 C -0.53 -14.99 9.79 -34.44 -0.34 -15.32 16 15 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 16 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 17 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 18 Si 0.87 20.02 27.47 -169.99 -4.67 15.35 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 22 N -0.30 -6.69 12.42 31.44 0.39 -6.30 16 23 N -0.51 -7.28 7.94 -9.90 -0.08 -7.36 16 24 C 0.35 4.37 7.64 -157.23 -1.20 3.17 16 25 C -0.08 -0.78 10.32 36.01 0.37 -0.41 16 26 N -0.55 -6.23 10.27 -7.06 -0.07 -6.30 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.26 8.09 -51.93 -0.42 -0.16 16 30 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 31 H 0.42 2.55 8.74 -40.82 -0.36 2.19 16 32 H 0.41 4.75 8.84 -40.82 -0.36 4.39 16 33 H 0.16 3.12 5.91 -52.49 -0.31 2.81 16 34 H 0.17 2.55 8.06 -52.49 -0.42 2.13 16 35 H 0.04 0.98 7.20 -51.93 -0.37 0.60 16 36 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 348.96 15.07 5.26 5.26 Total: -1.00 -36.96 348.96 -9.08 -46.04 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -4.76 Total: 6.20 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: -5.59 Total: 5.91 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: 0.61 Total: -69.76 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.06 Total: -9.00 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.67 Total: 15.35 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.96 -9.08 -46.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467152666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.541 kcal (2) G-P(sol) polarization free energy of solvation -36.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds