Wall clock time and date at job start Tue Mar 31 2020 11:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38209 * 120.40917 * 2 1 4 4 C 1.39504 * 118.33936 * 179.97438 * 3 2 1 5 5 N 1.38994 * 120.52333 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99920 * 185.06348 * 5 4 3 7 7 O 1.21574 * 120.00464 * 354.92426 * 6 5 4 8 8 N 1.34784 * 119.99970 * 174.91595 * 6 5 4 9 9 C 1.40186 * 120.00068 * 180.02562 * 8 6 5 10 10 C 1.40405 * 125.97120 * 0.02562 * 9 8 6 11 11 C 1.35244 * 107.86636 * 179.70544 * 10 9 8 12 12 N 1.34970 * 107.85726 * 0.26318 * 11 10 9 13 13 C 1.46496 * 125.97151 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47083 * 125.00436 * 13 12 11 15 15 H 1.08001 * 119.99918 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00024 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00229 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00139 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47436 * 89.99713 * 18 16 14 20 20 H 1.48505 * 109.47115 * 209.99828 * 18 16 14 21 21 H 1.48501 * 109.47121 * 329.99573 * 18 16 14 22 22 N 1.31212 * 125.97529 * 180.18281 * 9 8 6 23 23 N 1.32929 * 118.95441 * 0.27626 * 4 3 2 24 24 C 1.31747 * 120.70009 * 359.44094 * 23 4 3 25 25 C 1.50700 * 119.08823 * 180.26419 * 24 23 4 26 26 N 1.31797 * 121.82727 * 0.57750 * 24 23 4 27 27 H 1.09001 * 109.47637 * 89.99452 * 1 2 3 28 28 H 1.08994 * 109.47058 * 209.99911 * 1 2 3 29 29 H 1.09001 * 109.46815 * 329.99911 * 1 2 3 30 30 H 1.07997 * 120.82625 * 359.95992 * 3 2 1 31 31 H 0.97003 * 120.00346 * 5.06439 * 5 4 3 32 32 H 0.96998 * 119.99895 * 0.02562 * 8 6 5 33 33 H 1.08001 * 126.06451 * 359.97290 * 10 9 8 34 34 H 1.08000 * 126.06904 * 180.28412 * 11 10 9 35 35 H 1.09007 * 109.47115 * 245.00000 * 13 12 11 36 36 H 1.09002 * 109.47834 * 5.00110 * 13 12 11 37 37 H 0.96994 * 120.00501 * 180.02562 * 17 16 14 38 38 H 1.08996 * 109.47596 * 270.30489 * 25 24 23 39 39 H 1.09007 * 109.46911 * 30.30623 * 25 24 23 40 40 H 1.08998 * 109.47221 * 150.29512 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2065 1.1920 0.0000 4 6 3.6006 1.1416 0.0005 5 7 4.3494 2.3126 0.0011 6 6 5.6920 2.2541 -0.1014 7 8 6.2553 1.1768 -0.1014 8 7 6.4101 3.3900 -0.2041 9 6 7.8066 3.3292 -0.3112 10 6 8.5824 2.1590 -0.3249 11 6 9.8793 2.5225 -0.4480 12 7 9.9279 3.8701 -0.5043 13 6 11.1395 4.6827 -0.6382 14 6 11.0040 5.5938 -1.8308 15 1 10.1055 5.5697 -2.4295 16 6 12.0272 6.4582 -2.1577 17 7 11.9093 7.2531 -3.1989 18 14 13.5817 6.4994 -1.1227 19 1 14.5637 5.5265 -1.6654 20 1 14.1651 7.8645 -1.1599 21 1 13.2521 6.1400 0.2799 22 7 8.6173 4.3558 -0.4133 23 7 4.2017 -0.0440 -0.0046 24 6 3.4956 -1.1562 0.0010 25 6 4.2146 -2.4806 0.0010 26 7 2.1777 -1.1428 0.0004 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6868 2.1387 -0.0006 31 1 3.9056 3.1720 0.0753 32 1 5.9608 4.2496 -0.2039 33 1 8.2094 1.1479 -0.2545 34 1 10.7257 1.8532 -0.4935 35 1 11.2770 5.2811 0.2625 36 1 12.0015 4.0299 -0.7757 37 1 12.6292 7.8609 -3.4291 38 1 4.3884 -2.7998 -1.0266 39 1 5.1699 -2.3754 0.5153 40 1 3.6057 -3.2247 0.5145 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467152666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:03 Heat of formation + Delta-G solvation = 98.390558 kcal Electronic energy + Delta-G solvation = -24787.520592 eV Core-core repulsion = 21025.505382 eV Total energy + Delta-G solvation = -3762.015210 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.58510 -42.07242 -40.85800 -37.03944 -36.15422 -35.36993 -35.17492 -33.41959 -32.54310 -30.98317 -30.03321 -29.25172 -28.79131 -25.37218 -24.19230 -23.47768 -22.74212 -21.92528 -21.41245 -19.76840 -19.13416 -18.76673 -18.10937 -17.63820 -17.15077 -16.78306 -16.40079 -16.33343 -16.04767 -15.76395 -15.36036 -15.15741 -14.80082 -14.37518 -14.18738 -13.98659 -13.87278 -13.84405 -13.56136 -13.27608 -13.02325 -13.00397 -12.54224 -12.41778 -12.18847 -11.85753 -11.79411 -11.64205 -11.51339 -11.28291 -10.86748 -10.81398 -10.06708 -9.89490 -9.75559 -9.09664 -8.37284 -6.47462 -0.10349 0.12809 0.79711 1.04564 1.37097 1.39746 1.49550 1.63932 1.89413 2.28222 2.29480 2.70979 2.81718 2.95349 3.04949 3.22105 3.67323 3.90191 4.11647 4.18519 4.19330 4.44837 4.59166 4.65980 4.70643 4.71547 4.77041 4.82444 4.84693 4.91021 4.92745 5.06096 5.19294 5.23806 5.27865 5.48098 5.61793 5.85124 6.00171 6.08662 6.40041 6.53576 6.59867 7.01313 7.15411 7.16628 7.32197 8.79729 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.033958 B = 0.002284 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.361622 B =12255.687978 C =12794.144521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.187 3.813 3 C -0.257 4.257 4 C 0.406 3.594 5 N -0.641 5.641 6 C 0.703 3.297 7 O -0.534 6.534 8 N -0.630 5.630 9 C 0.283 3.717 10 C -0.292 4.292 11 C 0.062 3.938 12 N -0.344 5.344 13 C 0.239 3.761 14 C -0.546 4.546 15 H 0.027 0.973 16 C 0.013 3.987 17 N -0.942 5.942 18 Si 0.956 3.044 19 H -0.254 1.254 20 H -0.281 1.281 21 H -0.239 1.239 22 N -0.344 5.344 23 N -0.552 5.552 24 C 0.332 3.668 25 C -0.080 4.080 26 N -0.559 5.559 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.188 0.812 31 H 0.439 0.561 32 H 0.423 0.577 33 H 0.166 0.834 34 H 0.211 0.789 35 H 0.047 0.953 36 H 0.082 0.918 37 H 0.272 0.728 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.318 -14.441 9.839 27.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.043 3.957 3 C -0.283 4.283 4 C 0.166 3.834 5 N -0.292 5.292 6 C 0.402 3.598 7 O -0.404 6.404 8 N -0.282 5.282 9 C 0.028 3.972 10 C -0.323 4.323 11 C -0.086 4.086 12 N -0.126 5.126 13 C 0.119 3.881 14 C -0.584 4.584 15 H 0.045 0.955 16 C -0.185 4.185 17 N -0.581 5.581 18 Si 0.776 3.224 19 H -0.178 1.178 20 H -0.207 1.207 21 H -0.162 1.162 22 N -0.175 5.175 23 N -0.274 5.274 24 C 0.064 3.936 25 C -0.139 4.139 26 N -0.278 5.278 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.125 0.875 30 H 0.205 0.795 31 H 0.280 0.720 32 H 0.261 0.739 33 H 0.184 0.816 34 H 0.227 0.773 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.998 -14.717 9.654 26.640 hybrid contribution -0.044 1.476 -0.185 1.488 sum -20.041 -13.241 9.470 25.820 Atomic orbital electron populations 1.20884 0.84650 1.05336 1.04812 1.22197 0.99257 0.86922 0.87354 1.22354 0.91270 1.03106 1.11563 1.18655 0.88662 0.85840 0.90289 1.42273 1.04248 1.08757 1.73933 1.15798 0.81818 0.83624 0.78596 1.90975 1.68888 1.27737 1.52803 1.41289 1.02082 1.09430 1.75444 1.19030 0.84168 0.93007 1.01029 1.21716 0.91215 0.99675 1.19740 1.23234 1.00211 0.85057 1.00062 1.48500 1.04638 1.05225 1.54192 1.19900 0.79754 0.91300 0.97109 1.21226 1.03545 1.21814 1.11817 0.95505 1.25928 1.02551 0.93756 0.96307 1.70048 1.35106 1.24378 1.28572 0.85614 0.78000 0.78600 0.80152 1.17806 1.20672 1.16186 1.77302 0.88910 1.21285 1.30018 1.68230 1.41627 0.98093 1.19432 1.23618 0.86755 0.94606 0.88623 1.20605 0.99864 0.88932 1.04457 1.68206 1.09240 1.31349 1.19008 0.88413 0.89900 0.87495 0.79454 0.71963 0.73895 0.81633 0.77255 0.93560 0.90027 0.91898 0.88957 0.90109 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 10.21 71.23 0.73 0.01 16 2 C 0.19 3.01 6.82 42.45 0.29 3.30 16 3 C -0.26 -3.81 9.72 22.57 0.22 -3.59 16 4 C 0.41 9.18 7.45 133.00 0.99 10.17 16 5 N -0.64 -12.79 5.39 -321.76 -1.73 -14.53 16 6 C 0.70 20.58 8.49 179.05 1.52 22.10 16 7 O -0.53 -19.68 11.78 -3.95 -0.05 -19.73 16 8 N -0.63 -18.82 5.46 -321.24 -1.75 -20.57 16 9 C 0.28 11.21 8.11 133.32 1.08 12.30 16 10 C -0.29 -11.27 9.61 22.11 0.21 -11.05 16 11 C 0.06 2.31 11.44 83.52 0.96 3.27 16 12 N -0.34 -15.34 3.67 -351.84 -1.29 -16.63 16 13 C 0.24 11.01 5.33 85.63 0.46 11.46 16 14 C -0.55 -31.39 9.79 25.60 0.25 -31.14 16 15 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 16 C 0.01 0.75 5.47 84.65 0.46 1.22 16 17 N -0.94 -57.92 13.96 21.45 0.30 -57.62 16 18 Si 0.96 40.54 27.47 68.60 1.88 42.43 16 19 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 20 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 21 H -0.24 -9.11 6.54 99.48 0.65 -8.46 16 22 N -0.34 -15.83 12.42 -54.44 -0.68 -16.50 16 23 N -0.55 -15.80 7.94 -185.22 -1.47 -17.28 16 24 C 0.33 8.23 7.64 138.76 1.06 9.29 16 25 C -0.08 -1.53 10.32 71.24 0.73 -0.79 16 26 N -0.56 -12.17 10.27 -176.24 -1.81 -13.98 16 27 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.11 0.22 8.09 -2.39 -0.02 0.20 16 30 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 31 H 0.44 4.46 8.74 -92.71 -0.81 3.65 16 32 H 0.42 9.70 8.84 -92.71 -0.82 8.88 16 33 H 0.17 6.35 5.91 -2.91 -0.02 6.33 16 34 H 0.21 5.72 8.06 -2.91 -0.02 5.70 16 35 H 0.05 2.08 7.20 -2.38 -0.02 2.06 16 36 H 0.08 3.23 7.50 -2.39 -0.02 3.21 16 37 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -85.41 348.96 1.79 -83.62 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -0.57 Total: 24.27 kcal Atomic # 6 Polarization: 17.57 SS G_CDS: 8.96 Total: 26.53 kcal Atomic # 7 Polarization: -148.68 SS G_CDS: -8.43 Total: -157.11 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.05 Total: -19.73 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 1.88 Total: 42.43 kcal Total: -85.41 1.79 -83.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467152666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.007 kcal (2) G-P(sol) polarization free energy of solvation -85.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds