Wall clock time and date at job start Tue Mar 31 2020 11:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40400 * 107.86833 * 179.90760 * 3 2 1 5 5 N 1.40185 * 125.97142 * 180.14689 * 4 3 2 6 6 C 1.34769 * 120.00075 * 0.23346 * 5 4 3 7 7 O 1.21583 * 120.00344 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99966 * 180.02562 * 6 5 4 9 9 C 1.39389 * 119.99827 * 179.97438 * 8 6 5 10 10 N 1.32633 * 120.08699 * 359.97438 * 9 8 6 11 11 C 1.32188 * 119.92464 * 180.02562 * 10 9 8 12 12 C 1.38243 * 120.09209 * 359.97438 * 11 10 9 13 13 N 1.32222 * 120.17145 * 359.97438 * 12 11 10 14 14 C 1.31979 * 120.07365 * 359.71413 * 13 12 11 15 15 C 1.50702 * 120.04773 * 180.27701 * 14 13 12 16 16 N 1.31208 * 108.05420 * 0.35939 * 4 3 2 17 17 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 18 18 C 1.46501 * 125.97470 * 359.93137 * 17 2 1 19 19 C 1.50696 * 109.47264 * 89.99908 * 18 17 2 20 20 H 1.07995 * 120.00574 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99631 * 180.02562 * 19 18 17 22 22 N 1.31508 * 120.00010 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99453 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47243 * 89.99761 * 23 21 19 25 25 H 1.48507 * 109.46579 * 209.99422 * 23 21 19 26 26 H 1.48495 * 109.47488 * 329.99522 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 30 30 H 1.08001 * 126.06270 * 0.02562 * 3 2 1 31 31 H 0.97004 * 119.99611 * 180.22734 * 5 4 3 32 32 H 0.96995 * 120.00368 * 359.97438 * 8 6 5 33 33 H 1.08001 * 119.95391 * 180.02562 * 11 10 9 34 34 H 1.08005 * 119.91602 * 179.97438 * 12 11 10 35 35 H 1.09001 * 109.47071 * 270.28592 * 15 14 13 36 36 H 1.09000 * 109.47325 * 30.28492 * 15 14 13 37 37 H 1.08997 * 109.47675 * 150.28347 * 15 14 13 38 38 H 1.08997 * 109.47110 * 210.00118 * 18 17 2 39 39 H 1.08999 * 109.47071 * 329.99324 * 18 17 2 40 40 H 0.97007 * 119.99590 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0022 5 7 4.7737 1.4750 0.0058 6 6 4.6370 2.8158 0.0122 7 8 3.5278 3.3138 0.0145 8 7 5.7297 3.6046 0.0152 9 6 5.5883 4.9913 0.0213 10 7 4.3791 5.5363 0.0238 11 6 4.2486 6.8517 0.0291 12 6 5.3705 7.6595 0.0326 13 7 6.5777 7.1201 0.0312 14 6 6.7157 5.8076 0.0321 15 6 8.0919 5.1935 0.0369 16 7 3.6337 -0.6575 -0.0044 17 7 2.3017 -1.0909 -0.0060 18 6 1.8501 -2.4846 -0.0121 19 6 1.6938 -2.9557 -1.4350 20 1 1.9089 -2.2842 -2.2530 21 6 1.2751 -4.2440 -1.6926 22 7 1.0127 -5.0616 -0.6965 23 14 1.0808 -4.8277 -3.4564 24 1 2.3610 -5.4144 -3.9276 25 1 0.0112 -5.8558 -3.5224 26 1 0.7156 -3.6772 -4.3212 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9720 2.1211 0.0004 31 1 5.6587 1.0777 0.0037 32 1 6.6147 3.2074 0.0130 33 1 3.2642 7.2960 0.0315 34 1 5.2606 8.7339 0.0365 35 1 8.4292 5.0498 -0.9896 36 1 8.7836 5.8560 0.5571 37 1 8.0585 4.2306 0.5465 38 1 2.5852 -3.1070 0.4980 39 1 0.8920 -2.5583 0.5024 40 1 0.7185 -5.9680 -0.8778 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467559307.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:49 Heat of formation + Delta-G solvation = 118.527067 kcal Electronic energy + Delta-G solvation = -25130.769467 eV Core-core repulsion = 21369.627442 eV Total energy + Delta-G solvation = -3761.142026 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.72214 -40.71868 -39.59526 -35.82453 -34.95713 -34.57301 -33.40917 -31.90461 -31.22575 -30.69304 -28.34047 -26.74945 -26.34956 -24.99180 -23.21298 -22.99673 -21.74122 -20.21348 -19.74311 -18.72571 -17.83826 -16.89561 -16.68519 -16.31161 -16.12206 -15.93279 -15.21125 -15.05130 -14.59300 -14.56927 -14.24455 -14.02159 -13.27312 -13.19233 -13.00187 -12.69039 -12.48412 -12.37144 -12.29422 -11.81126 -11.72987 -11.60091 -11.41325 -11.09879 -10.85142 -10.72590 -10.44978 -10.29316 -10.13941 -9.78409 -9.55243 -9.10568 -8.66436 -8.65587 -7.95360 -7.45685 -6.26684 -4.34381 0.51924 0.94906 1.95980 2.57493 2.99338 3.20842 3.26913 3.27667 3.34087 3.49688 3.79638 3.80799 3.92834 4.03200 4.26083 4.32407 4.70392 4.79590 5.00981 5.06934 5.10011 5.18523 5.37589 5.54933 5.65617 5.74091 5.93773 6.01511 6.10649 6.20673 6.42495 6.47454 6.58604 6.81179 6.94667 7.04756 7.14532 7.41571 7.56483 7.66142 7.82690 7.87938 8.04379 8.41729 8.63010 8.74024 9.32074 10.80508 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.026853 B = 0.002503 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.480502 B =11183.621548 C =11559.638176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.093 3.907 3 C -0.288 4.288 4 C 0.279 3.721 5 N -0.638 5.638 6 C 0.700 3.300 7 O -0.501 6.501 8 N -0.660 5.660 9 C 0.341 3.659 10 N -0.426 5.426 11 C 0.083 3.917 12 C 0.008 3.992 13 N -0.414 5.414 14 C 0.045 3.955 15 C -0.101 4.101 16 N -0.320 5.320 17 N -0.317 5.317 18 C 0.259 3.741 19 C -0.536 4.536 20 H 0.064 0.936 21 C 0.066 3.934 22 N -0.891 5.891 23 Si 0.906 3.094 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.272 1.272 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.161 0.839 31 H 0.407 0.593 32 H 0.416 0.584 33 H 0.173 0.827 34 H 0.170 0.830 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.082 21.098 2.794 23.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.038 4.038 3 C -0.319 4.319 4 C 0.026 3.974 5 N -0.289 5.289 6 C 0.399 3.601 7 O -0.369 6.369 8 N -0.311 5.311 9 C 0.105 3.895 10 N -0.146 5.146 11 C -0.078 4.078 12 C -0.152 4.152 13 N -0.129 5.129 14 C -0.102 4.102 15 C -0.159 4.159 16 N -0.151 5.151 17 N -0.099 5.099 18 C 0.141 3.859 19 C -0.575 4.575 20 H 0.083 0.917 21 C -0.138 4.138 22 N -0.529 5.529 23 Si 0.733 3.267 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.196 1.196 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.179 0.821 31 H 0.242 0.758 32 H 0.254 0.746 33 H 0.190 0.810 34 H 0.187 0.813 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.620 20.063 2.839 22.431 hybrid contribution 0.356 -0.189 -0.949 1.031 sum 9.976 19.874 1.890 22.318 Atomic orbital electron populations 1.20382 0.87883 1.03894 1.02550 1.21059 0.94942 0.87053 1.00785 1.21249 0.89615 0.99938 1.21101 1.18593 0.86290 0.89265 1.03235 1.41313 1.07957 1.03264 1.76373 1.15678 0.84530 0.80662 0.79255 1.91007 1.22190 1.72406 1.51278 1.42666 1.09900 1.02899 1.75625 1.18907 0.90881 0.84380 0.95361 1.68540 1.22339 1.12523 1.11191 1.23775 1.00948 0.88601 0.94442 1.23583 0.88450 1.02033 1.01123 1.68186 1.26190 1.10550 1.07970 1.21653 0.95635 0.89913 1.03016 1.20659 0.91238 1.00372 1.03616 1.77244 1.00085 1.08133 1.29652 1.48992 1.00812 1.07806 1.52327 1.19690 0.95990 0.71297 0.98919 1.21329 1.46806 0.97985 0.91383 0.91732 1.24930 0.94665 0.96057 0.98129 1.69920 1.44914 1.06974 1.31128 0.86358 0.78012 0.78576 0.83762 1.20354 1.20866 1.19639 0.91063 0.89901 0.90577 0.82149 0.75842 0.74576 0.81011 0.81293 0.89791 0.89510 0.90911 0.93004 0.92749 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.89 36.01 0.36 -1.17 16 2 C 0.09 1.96 6.93 -82.28 -0.57 1.39 16 3 C -0.29 -5.95 9.52 -39.83 -0.38 -6.33 16 4 C 0.28 5.63 8.11 -154.37 -1.25 4.38 16 5 N -0.64 -9.66 5.45 -15.51 -0.08 -9.74 16 6 C 0.70 10.47 8.50 -86.92 -0.74 9.73 16 7 O -0.50 -9.32 11.74 5.29 0.06 -9.25 16 8 N -0.66 -7.03 5.30 -15.71 -0.08 -7.11 16 9 C 0.34 3.98 7.41 -154.42 -1.14 2.83 16 10 N -0.43 -5.75 8.05 -12.18 -0.10 -5.85 16 11 C 0.08 0.81 11.22 -17.40 -0.20 0.61 16 12 C 0.01 0.07 11.21 -17.38 -0.19 -0.12 16 13 N -0.41 -4.11 10.42 -9.13 -0.10 -4.21 16 14 C 0.04 0.42 6.81 -82.17 -0.56 -0.14 16 15 C -0.10 -0.57 9.75 36.01 0.35 -0.22 16 16 N -0.32 -7.30 12.59 31.44 0.40 -6.90 16 17 N -0.32 -7.48 3.59 -58.33 -0.21 -7.69 16 18 C 0.26 6.59 5.81 -5.20 -0.03 6.56 16 19 C -0.54 -14.70 9.39 -34.44 -0.32 -15.02 16 20 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 21 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -24.92 13.29 55.43 0.74 -24.19 16 23 Si 0.91 21.02 29.54 -169.99 -5.02 16.00 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.08 1.52 7.71 -51.93 -0.40 1.12 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.16 3.29 5.91 -52.49 -0.31 2.98 16 31 H 0.41 4.65 8.84 -40.82 -0.36 4.29 16 32 H 0.42 2.67 6.71 -40.82 -0.27 2.40 16 33 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.17 0.81 8.06 -52.48 -0.42 0.39 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.27 6.56 -51.93 -0.34 -0.07 16 38 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.05 1.37 7.65 -51.93 -0.40 0.97 16 40 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 347.62 15.07 5.24 5.24 Total: -1.00 -35.60 347.62 -8.52 -44.13 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.59 Total: 5.38 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -4.78 Total: 4.19 kcal Atomic # 7 Polarization: -66.25 SS G_CDS: 0.56 Total: -65.68 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.06 Total: -9.25 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.60 -8.52 -44.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467559307.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.652 kcal (2) G-P(sol) polarization free energy of solvation -35.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds