Wall clock time and date at job start Tue Mar 31 2020 11:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40400 * 107.86833 * 179.90760 * 3 2 1 5 5 N 1.40185 * 125.97142 * 180.14689 * 4 3 2 6 6 C 1.34769 * 120.00075 * 0.23346 * 5 4 3 7 7 O 1.21583 * 120.00344 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99966 * 180.02562 * 6 5 4 9 9 C 1.39389 * 119.99827 * 179.97438 * 8 6 5 10 10 N 1.32633 * 120.08699 * 359.97438 * 9 8 6 11 11 C 1.32188 * 119.92464 * 180.02562 * 10 9 8 12 12 C 1.38243 * 120.09209 * 359.97438 * 11 10 9 13 13 N 1.32222 * 120.17145 * 359.97438 * 12 11 10 14 14 C 1.31979 * 120.07365 * 359.71413 * 13 12 11 15 15 C 1.50702 * 120.04773 * 180.27701 * 14 13 12 16 16 N 1.31208 * 108.05420 * 0.35939 * 4 3 2 17 17 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 18 18 C 1.46501 * 125.97470 * 359.93137 * 17 2 1 19 19 C 1.50696 * 109.47264 * 89.99908 * 18 17 2 20 20 H 1.07995 * 120.00574 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99631 * 180.02562 * 19 18 17 22 22 N 1.31508 * 120.00010 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99453 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47243 * 89.99761 * 23 21 19 25 25 H 1.48507 * 109.46579 * 209.99422 * 23 21 19 26 26 H 1.48495 * 109.47488 * 329.99522 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 30 30 H 1.08001 * 126.06270 * 0.02562 * 3 2 1 31 31 H 0.97004 * 119.99611 * 180.22734 * 5 4 3 32 32 H 0.96995 * 120.00368 * 359.97438 * 8 6 5 33 33 H 1.08001 * 119.95391 * 180.02562 * 11 10 9 34 34 H 1.08005 * 119.91602 * 179.97438 * 12 11 10 35 35 H 1.09001 * 109.47071 * 270.28592 * 15 14 13 36 36 H 1.09000 * 109.47325 * 30.28492 * 15 14 13 37 37 H 1.08997 * 109.47675 * 150.28347 * 15 14 13 38 38 H 1.08997 * 109.47110 * 210.00118 * 18 17 2 39 39 H 1.08999 * 109.47071 * 329.99324 * 18 17 2 40 40 H 0.97007 * 119.99590 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0022 5 7 4.7737 1.4750 0.0058 6 6 4.6370 2.8158 0.0122 7 8 3.5278 3.3138 0.0145 8 7 5.7297 3.6046 0.0152 9 6 5.5883 4.9913 0.0213 10 7 4.3791 5.5363 0.0238 11 6 4.2486 6.8517 0.0291 12 6 5.3705 7.6595 0.0326 13 7 6.5777 7.1201 0.0312 14 6 6.7157 5.8076 0.0321 15 6 8.0919 5.1935 0.0369 16 7 3.6337 -0.6575 -0.0044 17 7 2.3017 -1.0909 -0.0060 18 6 1.8501 -2.4846 -0.0121 19 6 1.6938 -2.9557 -1.4350 20 1 1.9089 -2.2842 -2.2530 21 6 1.2751 -4.2440 -1.6926 22 7 1.0127 -5.0616 -0.6965 23 14 1.0808 -4.8277 -3.4564 24 1 2.3610 -5.4144 -3.9276 25 1 0.0112 -5.8558 -3.5224 26 1 0.7156 -3.6772 -4.3212 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9720 2.1211 0.0004 31 1 5.6587 1.0777 0.0037 32 1 6.6147 3.2074 0.0130 33 1 3.2642 7.2960 0.0315 34 1 5.2606 8.7339 0.0365 35 1 8.4292 5.0498 -0.9896 36 1 8.7836 5.8560 0.5571 37 1 8.0585 4.2306 0.5465 38 1 2.5852 -3.1070 0.4980 39 1 0.8920 -2.5583 0.5024 40 1 0.7185 -5.9680 -0.8778 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467559307.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:49 Heat of formation + Delta-G solvation = 94.104369 kcal Electronic energy + Delta-G solvation = -25131.828515 eV Core-core repulsion = 21369.627442 eV Total energy + Delta-G solvation = -3762.201073 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.64804 -42.14316 -40.80366 -36.88299 -36.21051 -35.49769 -35.25511 -33.21944 -32.67082 -32.08050 -28.99716 -28.56688 -27.87818 -26.05275 -24.81585 -23.84996 -22.98135 -21.52079 -21.21116 -19.88172 -18.92727 -18.75811 -17.82025 -17.54029 -17.14592 -16.99536 -16.74757 -16.27647 -16.08547 -15.64503 -15.54591 -15.28215 -14.67622 -14.34910 -13.82821 -13.81080 -13.74898 -13.65393 -13.56351 -13.18274 -13.16067 -12.86048 -12.69743 -12.65907 -12.46994 -12.24989 -12.08980 -11.60874 -11.52909 -11.36853 -11.24816 -10.73539 -9.93608 -9.62771 -9.44205 -9.09119 -8.32519 -6.50080 -0.21353 0.17962 0.81584 1.01879 1.38171 1.38871 1.50236 1.61921 1.90490 2.28130 2.34598 2.75592 2.80831 2.97227 3.22074 3.33005 3.42561 3.84572 4.09378 4.14328 4.18173 4.44386 4.46296 4.65431 4.71809 4.75063 4.77247 4.87439 4.90166 4.98049 5.02083 5.12512 5.16332 5.23285 5.51025 5.54006 5.60504 5.81498 5.91466 6.25875 6.27617 6.55571 6.62948 6.88585 7.06986 7.20875 7.28461 8.73348 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.026853 B = 0.002503 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.480502 B =11183.621548 C =11559.638176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.089 3.911 3 C -0.297 4.297 4 C 0.291 3.709 5 N -0.628 5.628 6 C 0.703 3.297 7 O -0.539 6.539 8 N -0.641 5.641 9 C 0.312 3.688 10 N -0.471 5.471 11 C 0.069 3.931 12 C 0.023 3.977 13 N -0.433 5.433 14 C 0.053 3.947 15 C -0.103 4.103 16 N -0.354 5.354 17 N -0.342 5.342 18 C 0.276 3.724 19 C -0.553 4.553 20 H 0.049 0.951 21 C 0.023 3.977 22 N -0.918 5.918 23 Si 0.970 3.030 24 H -0.274 1.274 25 H -0.271 1.271 26 H -0.270 1.270 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.165 0.835 31 H 0.424 0.576 32 H 0.435 0.565 33 H 0.195 0.805 34 H 0.206 0.794 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.026 0.974 39 H 0.052 0.948 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.982 22.725 2.120 25.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.041 4.041 3 C -0.328 4.328 4 C 0.036 3.964 5 N -0.281 5.281 6 C 0.401 3.599 7 O -0.409 6.409 8 N -0.294 5.294 9 C 0.077 3.923 10 N -0.191 5.191 11 C -0.091 4.091 12 C -0.137 4.137 13 N -0.148 5.148 14 C -0.092 4.092 15 C -0.160 4.160 16 N -0.184 5.184 17 N -0.125 5.125 18 C 0.157 3.843 19 C -0.591 4.591 20 H 0.068 0.932 21 C -0.178 4.178 22 N -0.556 5.556 23 Si 0.794 3.206 24 H -0.200 1.200 25 H -0.195 1.195 26 H -0.195 1.195 27 H 0.111 0.889 28 H 0.086 0.914 29 H 0.119 0.881 30 H 0.182 0.818 31 H 0.262 0.738 32 H 0.277 0.723 33 H 0.211 0.789 34 H 0.223 0.777 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.044 0.956 39 H 0.070 0.930 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.596 21.726 2.175 24.270 hybrid contribution 0.139 -0.468 -0.691 0.846 sum 10.735 21.258 1.484 23.861 Atomic orbital electron populations 1.20499 0.85426 1.04346 1.04107 1.21714 0.96641 0.86384 0.99395 1.21388 0.90005 0.99867 1.21529 1.18851 0.87775 0.88907 1.00854 1.41241 1.07509 1.03176 1.76142 1.15807 0.85037 0.80422 0.78617 1.90971 1.24090 1.72992 1.52896 1.42325 1.09605 1.02505 1.74919 1.19136 0.91337 0.84489 0.97374 1.68409 1.23927 1.14553 1.12230 1.24208 1.02618 0.87682 0.94573 1.24166 0.87571 1.03595 0.98360 1.68331 1.26851 1.10693 1.08912 1.22137 0.96456 0.89670 1.00981 1.20829 0.89108 1.01203 1.04880 1.77166 1.00067 1.09459 1.31750 1.48787 1.01633 1.07509 1.54572 1.19249 0.94954 0.72356 0.97754 1.21441 1.47522 0.98364 0.91794 0.93244 1.25720 0.93961 0.95914 1.02186 1.70000 1.45091 1.07414 1.33068 0.85370 0.78275 0.78182 0.78752 1.19964 1.19543 1.19476 0.88872 0.91351 0.88083 0.81803 0.73768 0.72254 0.78856 0.77720 0.88376 0.88840 0.88968 0.95612 0.93010 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.91 9.89 71.24 0.70 -2.20 16 2 C 0.09 3.79 6.93 41.39 0.29 4.08 16 3 C -0.30 -12.34 9.52 22.11 0.21 -12.13 16 4 C 0.29 11.80 8.11 133.32 1.08 12.88 16 5 N -0.63 -18.66 5.45 -321.26 -1.75 -20.41 16 6 C 0.70 20.62 8.50 179.06 1.52 22.15 16 7 O -0.54 -20.08 11.74 -3.98 -0.05 -20.13 16 8 N -0.64 -12.87 5.30 -321.90 -1.71 -14.57 16 9 C 0.31 6.94 7.41 132.88 0.98 7.93 16 10 N -0.47 -12.47 8.05 -192.43 -1.55 -14.02 16 11 C 0.07 1.26 11.22 84.64 0.95 2.21 16 12 C 0.02 0.33 11.21 84.64 0.95 1.28 16 13 N -0.43 -7.68 10.42 -182.80 -1.90 -9.58 16 14 C 0.05 0.91 6.81 42.77 0.29 1.20 16 15 C -0.10 -0.89 9.75 71.24 0.69 -0.19 16 16 N -0.35 -16.45 12.59 -54.44 -0.69 -17.13 16 17 N -0.34 -16.59 3.59 -338.45 -1.22 -17.80 16 18 C 0.28 14.55 5.81 85.63 0.50 15.05 16 19 C -0.55 -30.97 9.39 25.60 0.24 -30.73 16 20 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 21 C 0.02 1.27 5.46 84.66 0.46 1.73 16 22 N -0.92 -51.69 13.29 21.45 0.28 -51.40 16 23 Si 0.97 43.00 29.54 68.60 2.03 45.03 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 27 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 28 H 0.07 2.52 7.71 -2.39 -0.02 2.50 16 29 H 0.10 2.88 8.14 -2.38 -0.02 2.86 16 30 H 0.16 6.74 5.91 -2.91 -0.02 6.72 16 31 H 0.42 9.28 8.84 -92.71 -0.82 8.46 16 32 H 0.44 4.72 6.71 -92.71 -0.62 4.10 16 33 H 0.19 2.34 8.06 -2.91 -0.02 2.31 16 34 H 0.21 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.09 0.42 6.56 -2.39 -0.02 0.40 16 38 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.05 2.71 7.65 -2.39 -0.02 2.69 16 40 H 0.27 14.37 8.31 -92.70 -0.77 13.60 16 Total: -1.00 -78.56 347.62 2.00 -76.57 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -0.33 Total: 20.20 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 8.87 Total: 23.26 kcal Atomic # 7 Polarization: -136.39 SS G_CDS: -8.53 Total: -144.92 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.05 Total: -20.13 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -78.56 2.00 -76.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467559307.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.670 kcal (2) G-P(sol) polarization free energy of solvation -78.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds