Wall clock time and date at job start Tue Mar 31 2020 11:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47287 * 2 1 4 4 C 1.50699 * 109.46908 * 240.00013 * 2 1 3 5 5 H 1.08007 * 119.99938 * 239.99828 * 4 2 1 6 6 C 1.37875 * 120.00146 * 59.99941 * 4 2 1 7 7 N 1.31519 * 119.99768 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46819 * 60.00364 * 8 6 4 10 10 H 1.48506 * 109.47291 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47448 * 300.00457 * 8 6 4 12 12 C 1.53001 * 109.47086 * 120.00452 * 2 1 3 13 13 N 1.46506 * 109.47077 * 299.99660 * 12 2 1 14 14 C 1.34769 * 120.00088 * 180.27688 * 13 12 2 15 15 O 1.21575 * 120.00065 * 359.72749 * 14 13 12 16 16 C 1.47631 * 120.00172 * 179.72378 * 14 13 12 17 17 C 1.39468 * 120.63473 * 6.02273 * 16 14 13 18 18 N 1.31648 * 120.67342 * 180.02562 * 17 16 14 19 19 C 1.32045 * 122.16621 * 0.02562 * 18 17 16 20 20 C 1.38017 * 121.20750 * 359.97438 * 19 18 17 21 21 C 1.39588 * 119.16789 * 359.76595 * 20 19 18 22 22 C 1.48261 * 120.97160 * 180.25462 * 21 20 19 23 23 N 1.34112 * 126.68619 * 55.70128 * 22 21 20 24 24 N 1.28987 * 107.25885 * 179.88975 * 23 22 21 25 25 N 1.28724 * 108.96361 * 0.37874 * 24 23 22 26 26 H 0.97001 * 125.32404 * 179.77888 * 25 24 23 27 27 N 1.28869 * 109.34087 * 359.75548 * 25 24 23 28 28 H 1.08999 * 109.47143 * 299.99702 * 1 2 3 29 29 H 1.09003 * 109.47242 * 59.99440 * 1 2 3 30 30 H 1.09000 * 109.47797 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46864 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47317 * 300.00026 * 3 2 1 33 33 H 1.09000 * 109.47274 * 60.00280 * 3 2 1 34 34 H 0.97001 * 120.00101 * 179.97438 * 7 6 4 35 35 H 1.09008 * 109.47077 * 179.97438 * 12 2 1 36 36 H 1.08995 * 109.47771 * 59.99653 * 12 2 1 37 37 H 0.96999 * 119.99347 * 0.02562 * 13 12 2 38 38 H 1.08000 * 119.66404 * 0.03218 * 17 16 14 39 39 H 1.08001 * 119.39548 * 180.02562 * 19 18 17 40 40 H 1.08001 * 120.41419 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6033 8 14 2.3223 -1.1195 -4.0080 9 1 1.8277 -2.5198 -4.0082 10 1 1.8266 -0.4199 -5.2205 11 1 3.8073 -1.1191 -4.0078 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4455 14 6 1.8818 -0.4880 3.6695 15 8 2.5808 -1.4765 3.7810 16 6 1.3948 0.2115 4.8749 17 6 0.4926 1.2695 4.7668 18 7 0.0582 1.8941 5.8412 19 6 0.4486 1.5566 7.0567 20 6 1.3392 0.5220 7.2602 21 6 1.8296 -0.1803 6.1581 22 6 2.7834 -1.3020 6.3310 23 7 2.6048 -2.3967 7.0850 24 7 3.6634 -3.1233 6.9615 25 7 4.4902 -2.5278 6.1749 26 1 5.3637 -2.8641 5.9207 27 7 3.9754 -1.4151 5.7778 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3635 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.7094 1.1619 -3.4843 35 1 3.1300 -0.7218 1.2490 36 1 1.6766 -1.7490 1.2492 37 1 0.9937 0.7577 2.3564 38 1 0.1467 1.5796 3.7918 39 1 0.0632 2.0994 7.9071 40 1 1.6495 0.2565 8.2600 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589267365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:02 Heat of formation + Delta-G solvation = 131.374519 kcal Electronic energy + Delta-G solvation = -26107.580483 eV Core-core repulsion = 22346.995565 eV Total energy + Delta-G solvation = -3760.584918 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.38004 -40.70873 -38.88625 -36.47570 -34.68597 -33.88787 -33.45255 -31.90041 -31.65313 -30.62858 -26.28131 -25.77640 -25.41915 -24.85255 -24.62475 -23.90242 -22.13586 -20.57969 -19.39320 -18.88443 -17.90781 -17.28971 -16.98969 -16.42131 -15.85696 -15.09280 -15.03883 -14.86356 -14.54480 -14.46268 -14.00429 -13.79867 -13.39581 -12.95649 -12.80955 -12.53865 -12.33176 -12.24354 -11.45060 -11.33472 -11.24968 -11.12628 -11.00235 -10.89281 -10.76329 -10.43950 -10.26627 -10.15521 -9.81507 -9.69070 -9.51002 -9.47757 -9.29723 -8.85218 -8.54545 -8.38353 -6.05936 -4.16358 0.33511 0.67998 1.20917 2.10028 2.27864 2.94955 3.27176 3.31948 3.33785 3.42228 3.53107 3.66315 4.07235 4.32825 4.36427 4.57189 4.67353 4.79949 5.01513 5.12283 5.20873 5.33857 5.51801 5.63122 5.76975 6.13894 6.20160 6.24352 6.40039 6.44390 6.67062 6.76644 6.85931 6.90290 6.96248 7.29533 7.50793 7.56407 7.64877 7.87492 7.96366 8.08746 8.17283 8.32627 8.49097 8.83523 9.49611 10.95448 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.017338 B = 0.003532 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.576875 B = 7924.934972 C = 9248.617561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.508 4.508 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.134 3.866 13 N -0.705 5.705 14 C 0.550 3.450 15 O -0.535 6.535 16 C -0.149 4.149 17 C 0.139 3.861 18 N -0.475 5.475 19 C 0.120 3.880 20 C -0.144 4.144 21 C 0.088 3.912 22 C 0.211 3.789 23 N -0.263 5.263 24 N -0.060 5.060 25 N -0.222 5.222 26 H 0.474 0.526 27 N -0.237 5.237 28 H 0.006 0.994 29 H 0.087 0.913 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.087 0.913 33 H 0.006 0.994 34 H 0.261 0.739 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.398 0.602 38 H 0.168 0.832 39 H 0.169 0.831 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.133 1.319 18.458 18.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.074 0.926 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.012 3.988 13 N -0.355 5.355 14 C 0.334 3.666 15 O -0.413 6.413 16 C -0.156 4.156 17 C -0.020 4.020 18 N -0.183 5.183 19 C -0.036 4.036 20 C -0.165 4.165 21 C 0.076 3.924 22 C -0.070 4.070 23 N -0.137 5.137 24 N -0.055 5.055 25 N -0.068 5.068 26 H 0.328 0.672 27 N -0.088 5.088 28 H 0.025 0.975 29 H 0.105 0.895 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.105 0.895 33 H 0.025 0.975 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.234 0.766 38 H 0.185 0.815 39 H 0.186 0.814 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.158 0.831 18.479 18.623 hybrid contribution 1.047 -0.674 -1.279 1.785 sum 3.205 0.157 17.199 17.496 Atomic orbital electron populations 1.21842 0.97646 0.99262 1.00156 1.18370 0.92877 0.92819 0.90438 1.21836 0.98648 0.98239 1.00156 1.20909 1.31699 1.12157 0.89850 0.92553 1.24866 0.94805 0.94900 0.98820 1.69786 1.36491 1.22616 1.23413 0.86634 0.79216 0.79799 0.82206 1.20300 1.21271 1.20300 1.21782 0.98276 0.95788 0.82985 1.46239 1.51901 1.31663 1.05723 1.17837 0.81116 0.84496 0.83113 1.90754 1.37950 1.26134 1.86460 1.21252 1.00916 0.99413 0.94010 1.23059 0.91099 0.89573 0.98249 1.67667 1.23725 1.28023 0.98873 1.22922 0.92308 0.93276 0.95089 1.22152 0.98673 0.96561 0.99123 1.17437 0.92014 0.90243 0.92679 1.22944 0.92067 0.95912 0.96070 1.76076 1.15307 1.02424 1.19878 1.78805 0.96417 1.20673 1.09622 1.47673 1.18101 1.11706 1.29367 0.67175 1.75117 1.10995 1.04558 1.18160 0.97533 0.89458 0.95381 0.95384 0.89477 0.97514 0.92880 0.92436 0.92537 0.76603 0.81478 0.81399 0.83437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 4 C -0.51 -13.00 8.01 -34.44 -0.28 -13.28 16 5 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.88 -23.10 9.35 55.43 0.52 -22.58 16 8 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 C 0.13 2.74 4.50 -4.04 -0.02 2.72 16 13 N -0.70 -12.10 4.91 -61.32 -0.30 -12.41 16 14 C 0.55 9.48 7.74 -12.43 -0.10 9.38 16 15 O -0.53 -10.67 13.17 5.30 0.07 -10.60 16 16 C -0.15 -2.11 5.91 -104.55 -0.62 -2.73 16 17 C 0.14 1.68 10.70 -17.17 -0.18 1.50 16 18 N -0.47 -5.39 10.33 -12.99 -0.13 -5.53 16 19 C 0.12 1.08 11.16 -17.54 -0.20 0.88 16 20 C -0.14 -1.41 9.87 -39.16 -0.39 -1.79 16 21 C 0.09 1.18 5.94 -104.21 -0.62 0.56 16 22 C 0.21 3.13 6.28 -156.27 -0.98 2.15 16 23 N -0.26 -3.91 12.54 32.13 0.40 -3.51 16 24 N -0.06 -0.80 13.47 60.35 0.81 0.01 16 25 N -0.22 -2.57 7.90 60.35 0.48 -2.10 16 26 H 0.47 3.25 8.96 -340.36 -3.05 0.20 16 27 N -0.24 -3.46 10.42 32.15 0.33 -3.13 16 28 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 29 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 33 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 34 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 35 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.40 6.07 4.27 -40.82 -0.17 5.89 16 38 H 0.17 1.77 6.47 -52.49 -0.34 1.43 16 39 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 335.16 15.07 5.05 5.05 Total: -1.00 -31.53 335.16 -7.72 -39.25 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.99 Total: 3.03 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -2.95 Total: -2.90 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 2.11 Total: -49.24 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.07 Total: -10.60 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.53 -7.72 -39.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589267365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.625 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds